Wall clock time and date at job start Sat Apr 11 2020 06:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39674 * 120.00664 * 36.82498 * 3 2 1 5 5 C 1.37727 * 119.99089 * 179.97438 * 4 3 2 6 6 C 1.39629 * 120.00870 * 359.97438 * 5 4 3 7 7 C 1.47912 * 119.99464 * 180.02562 * 6 5 4 8 8 O 1.21538 * 120.00230 * 326.29130 * 7 6 5 9 9 N 1.34777 * 119.99952 * 146.02207 * 7 6 5 10 10 C 1.46928 * 120.62773 * 354.09926 * 9 7 6 11 11 C 1.52765 * 109.00862 * 233.58654 * 10 9 7 12 12 C 1.53040 * 109.38167 * 305.59112 * 11 10 9 13 13 N 1.46901 * 109.44458 * 181.25672 * 12 11 10 14 14 C 1.46900 * 111.00462 * 84.93919 * 13 12 11 15 15 C 1.53001 * 109.47106 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.46906 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47136 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00052 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00311 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00005 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00374 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46778 * 60.00002 * 21 19 17 23 23 H 1.48501 * 109.47071 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47271 * 300.00248 * 21 19 17 25 25 C 1.53036 * 109.53796 * 61.24070 * 12 11 10 26 26 C 1.46924 * 120.63423 * 174.38645 * 9 7 6 27 27 C 1.39629 * 120.01010 * 0.29141 * 6 5 4 28 28 C 1.37732 * 120.00291 * 359.45023 * 27 6 5 29 29 H 1.07993 * 120.00815 * 359.95723 * 4 3 2 30 30 H 1.07997 * 119.99778 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.59025 * 353.42506 * 10 9 7 32 32 H 1.08995 * 109.58740 * 113.84823 * 10 9 7 33 33 H 1.09000 * 109.56246 * 185.55622 * 11 10 9 34 34 H 1.08998 * 109.38399 * 65.52083 * 11 10 9 35 35 H 1.09000 * 109.45873 * 301.21767 * 12 11 10 36 36 H 1.00902 * 110.99849 * 320.97927 * 13 12 11 37 37 H 1.09002 * 109.46965 * 299.99714 * 14 13 12 38 38 H 1.08993 * 109.46932 * 59.99473 * 14 13 12 39 39 H 1.09002 * 109.46888 * 299.99654 * 15 14 13 40 40 H 1.08993 * 109.47743 * 59.99863 * 15 14 13 41 41 H 1.09002 * 109.47033 * 299.99526 * 16 15 14 42 42 H 1.09004 * 109.47505 * 59.99479 * 16 15 14 43 43 H 0.96995 * 120.00281 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.49225 * 178.68146 * 25 12 11 45 45 H 1.08997 * 109.52481 * 58.59879 * 25 12 11 46 46 H 1.09008 * 109.58249 * 246.15560 * 26 9 7 47 47 H 1.08998 * 109.58312 * 6.43366 * 26 9 7 48 48 H 1.08002 * 119.99872 * 179.72452 * 27 6 5 49 49 H 1.07997 * 119.99995 * 180.29387 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2669 -0.9672 -0.7250 5 6 4.6442 -0.9660 -0.7252 6 6 5.3418 0.0030 -0.0012 7 6 6.8209 0.0044 -0.0021 8 8 7.4296 -1.0461 -0.0592 9 7 7.4937 1.1708 0.0550 10 6 6.7776 2.4520 -0.0116 11 6 7.3827 3.3029 -1.1267 12 6 8.8907 3.4361 -0.9026 13 7 9.4693 4.2790 -1.9574 14 6 9.3548 5.7031 -1.6156 15 6 9.9663 6.5472 -2.7356 16 6 9.8476 8.0304 -2.3792 17 6 10.4504 8.8618 -3.4821 18 1 10.8760 8.3805 -4.3502 19 6 10.4586 10.2370 -3.3829 20 7 9.9399 10.8232 -2.3261 21 14 11.2065 11.2676 -4.7497 22 1 10.4843 11.0038 -6.0202 23 1 11.0901 12.7072 -4.4043 24 1 12.6389 10.9110 -4.9113 25 6 9.5387 2.0503 -0.9443 26 6 8.9577 1.1853 0.1785 27 6 4.6433 0.9673 0.7281 28 6 3.2660 0.9697 0.7243 29 1 2.7275 -1.7166 -1.2850 30 1 5.1847 -1.7146 -1.2853 31 1 5.7237 2.2711 -0.2228 32 1 6.8771 2.9760 0.9390 33 1 6.9251 4.2922 -1.1201 34 1 7.1987 2.8233 -2.0881 35 1 9.0743 3.8938 0.0695 36 1 9.0409 4.0859 -2.8503 37 1 8.3034 5.9648 -1.4966 38 1 9.8852 5.8967 -0.6832 39 1 11.0177 6.2856 -2.8550 40 1 9.4356 6.3536 -3.6677 41 1 8.7963 8.2923 -2.2595 42 1 10.3786 8.2238 -1.4471 43 1 9.9460 11.7906 -2.2561 44 1 10.6157 2.1482 -0.8079 45 1 9.3349 1.5817 -1.9071 46 1 9.2386 1.6039 1.1450 47 1 9.3415 0.1686 0.0952 48 1 5.1830 1.7140 1.2916 49 1 2.7258 1.7185 1.2846 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173426099.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:29 Heat of formation + Delta-G solvation = 17.138939 kcal Electronic energy + Delta-G solvation = -28039.992376 eV Core-core repulsion = 24159.656326 eV Total energy + Delta-G solvation = -3880.336050 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.20385 -39.49721 -38.22793 -36.89768 -35.95022 -33.88189 -32.84865 -31.91958 -31.84746 -31.04605 -29.94692 -26.67298 -25.57704 -24.16161 -23.83071 -23.04313 -22.25219 -21.29533 -20.33754 -19.70593 -19.52579 -17.96724 -16.81275 -16.35106 -16.07218 -15.48811 -15.40264 -15.25730 -15.11276 -14.86674 -14.57780 -14.47295 -14.32528 -14.22890 -14.06703 -13.80751 -13.64153 -13.30037 -13.07700 -12.77761 -12.75125 -12.46283 -12.25155 -12.18099 -11.78417 -11.74126 -11.54076 -11.41402 -11.08360 -10.83609 -10.80856 -10.61047 -10.48736 -10.34260 -9.74670 -9.70572 -9.56090 -9.37262 -9.11907 -9.03597 -8.35897 -8.21096 -6.01300 -4.03437 -0.17924 0.62042 1.95669 2.10346 2.43229 2.67315 3.22445 3.25121 3.32556 3.36826 3.39529 3.87699 4.11061 4.17843 4.19791 4.38167 4.46196 4.53632 4.65076 4.66488 4.75417 4.88784 4.95776 4.98691 5.15309 5.25092 5.27082 5.34524 5.37790 5.42209 5.44615 5.54941 5.58504 5.62615 5.66910 5.78291 5.80255 5.91619 6.01125 6.05393 6.20164 6.27231 6.67959 6.72974 6.89982 6.92007 7.10250 7.28108 7.55391 7.65952 7.67074 7.80696 7.98787 8.42142 9.03523 9.60649 11.10045 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013836 B = 0.001796 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.243418 B =15585.667069 C =17074.342010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C 0.250 3.750 3 C -0.006 4.006 4 C -0.075 4.075 5 C -0.065 4.065 6 C -0.100 4.100 7 C 0.557 3.443 8 O -0.532 6.532 9 N -0.602 5.602 10 C 0.094 3.906 11 C -0.168 4.168 12 C 0.087 3.913 13 N -0.686 5.686 14 C 0.060 3.940 15 C -0.108 4.108 16 C 0.023 3.977 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.121 4.121 26 C 0.111 3.889 27 C -0.095 4.095 28 C -0.077 4.077 29 H 0.141 0.859 30 H 0.145 0.855 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.338 0.662 37 H 0.024 0.976 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.044 0.956 41 H 0.013 0.987 42 H 0.016 0.984 43 H 0.261 0.739 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.095 0.905 48 H 0.148 0.852 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.202 -24.418 8.071 28.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.082 5.082 2 C -0.066 4.066 3 C -0.010 4.010 4 C -0.096 4.096 5 C -0.083 4.083 6 C -0.104 4.104 7 C 0.345 3.655 8 O -0.409 6.409 9 N -0.335 5.335 10 C -0.029 4.029 11 C -0.207 4.207 12 C -0.024 4.024 13 N -0.315 5.315 14 C -0.069 4.069 15 C -0.146 4.146 16 C -0.015 4.015 17 C -0.558 4.558 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.160 4.160 26 C -0.011 4.011 27 C -0.113 4.113 28 C -0.097 4.097 29 H 0.159 0.841 30 H 0.162 0.838 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.156 0.844 37 H 0.043 0.957 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.031 0.969 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.104 0.896 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.114 0.886 48 H 0.165 0.835 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.992 -24.829 8.361 28.813 hybrid contribution -0.205 1.039 -0.880 1.376 sum -12.197 -23.790 7.481 27.762 Atomic orbital electron populations 1.81302 1.11998 1.07276 1.07602 1.25671 0.92616 0.94141 0.94147 1.16148 0.84470 0.98740 1.01634 1.21180 0.93892 0.97216 0.97295 1.21173 0.93253 0.96862 0.97056 1.20183 0.93470 0.96974 0.99727 1.18299 0.86874 0.83680 0.76599 1.90802 1.69420 1.30991 1.49688 1.48040 1.07908 1.05618 1.71888 1.22208 0.97374 0.83647 0.99687 1.22650 0.98373 1.00557 0.99155 1.21569 0.90467 0.93789 0.96579 1.60641 1.60599 1.05685 1.04555 1.22155 0.98531 0.85799 1.00370 1.21628 0.99918 0.97306 0.95731 1.19056 0.96956 0.88584 0.96905 1.21219 1.38380 0.91263 1.04966 0.92734 1.25028 0.95548 0.98132 0.95800 1.69949 1.45589 1.09770 1.28301 0.86656 0.79825 0.79129 0.82378 1.20278 1.21312 1.20208 1.21903 1.01129 0.94361 0.98618 1.21734 0.78085 1.02285 0.98992 1.21541 0.93860 0.97501 0.98415 1.21169 0.93887 0.97294 0.97356 0.84112 0.83751 0.88385 0.90584 0.90135 0.91175 0.90329 0.84378 0.95740 0.91509 0.92562 0.93699 0.96858 0.96605 0.92976 0.89643 0.91500 0.91013 0.88626 0.83473 0.84050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.05 18.54 41.84 0.78 -3.27 16 2 C 0.25 1.81 15.32 -22.47 -0.34 1.47 16 3 C -0.01 -0.03 5.73 -106.90 -0.61 -0.65 16 4 C -0.08 -0.34 9.73 -39.23 -0.38 -0.72 16 5 C -0.06 -0.37 9.59 -39.25 -0.38 -0.74 16 6 C -0.10 -0.65 5.33 -104.90 -0.56 -1.21 16 7 C 0.56 5.04 7.40 -12.30 -0.09 4.95 16 8 O -0.53 -6.61 16.20 5.33 0.09 -6.52 16 9 N -0.60 -4.66 2.98 -174.12 -0.52 -5.17 16 10 C 0.09 0.56 4.72 -3.93 -0.02 0.55 16 11 C -0.17 -1.33 5.31 -26.83 -0.14 -1.47 16 12 C 0.09 0.84 2.43 -67.67 -0.16 0.67 16 13 N -0.69 -8.67 6.25 -106.68 -0.67 -9.34 16 14 C 0.06 0.93 5.48 -3.82 -0.02 0.91 16 15 C -0.11 -2.13 5.41 -26.73 -0.14 -2.28 16 16 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 17 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 21 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C -0.12 -1.07 5.69 -26.62 -0.15 -1.22 16 26 C 0.11 0.89 6.44 -3.72 -0.02 0.87 16 27 C -0.09 -0.43 7.34 -39.25 -0.29 -0.72 16 28 C -0.08 -0.32 9.73 -39.23 -0.38 -0.70 16 29 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 30 H 0.14 0.78 7.97 -52.49 -0.42 0.36 16 31 H 0.10 0.46 4.40 -51.93 -0.23 0.24 16 32 H 0.08 0.37 8.04 -51.93 -0.42 -0.05 16 33 H 0.08 0.68 7.42 -51.93 -0.39 0.29 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.79 7.80 -51.93 -0.40 0.38 16 36 H 0.34 4.11 8.48 -39.29 -0.33 3.78 16 37 H 0.02 0.37 7.41 -51.93 -0.38 -0.01 16 38 H 0.07 1.08 8.05 -51.93 -0.42 0.66 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 47 H 0.10 0.86 7.00 -51.93 -0.36 0.50 16 48 H 0.15 0.45 5.91 -52.49 -0.31 0.14 16 49 H 0.14 0.34 8.06 -52.49 -0.42 -0.09 16 LS Contribution 403.10 15.07 6.07 6.07 Total: -1.00 -33.34 403.10 -10.22 -43.56 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -7.43 Total: -2.58 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -4.25 Total: -13.29 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.33 Total: -43.73 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: 0.09 Total: -6.52 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.34 -10.22 -43.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173426099.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.699 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds