Wall clock time and date at job start Sat Apr 11 2020 06:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39674 * 120.00664 * 36.82498 * 3 2 1 5 5 C 1.37727 * 119.99089 * 179.97438 * 4 3 2 6 6 C 1.39629 * 120.00870 * 359.97438 * 5 4 3 7 7 C 1.47912 * 119.99464 * 180.02562 * 6 5 4 8 8 O 1.21538 * 120.00230 * 326.29130 * 7 6 5 9 9 N 1.34777 * 119.99952 * 146.02207 * 7 6 5 10 10 C 1.46928 * 120.62773 * 354.09926 * 9 7 6 11 11 C 1.52765 * 109.00862 * 233.58654 * 10 9 7 12 12 C 1.53040 * 109.38167 * 305.59112 * 11 10 9 13 13 N 1.46901 * 109.44458 * 181.25672 * 12 11 10 14 14 C 1.46900 * 111.00462 * 84.93919 * 13 12 11 15 15 C 1.53001 * 109.47106 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.46906 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47136 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00052 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00311 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00005 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00374 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46778 * 60.00002 * 21 19 17 23 23 H 1.48501 * 109.47071 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47271 * 300.00248 * 21 19 17 25 25 C 1.53036 * 109.53796 * 61.24070 * 12 11 10 26 26 C 1.46924 * 120.63423 * 174.38645 * 9 7 6 27 27 C 1.39629 * 120.01010 * 0.29141 * 6 5 4 28 28 C 1.37732 * 120.00291 * 359.45023 * 27 6 5 29 29 H 1.07993 * 120.00815 * 359.95723 * 4 3 2 30 30 H 1.07997 * 119.99778 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.59025 * 353.42506 * 10 9 7 32 32 H 1.08995 * 109.58740 * 113.84823 * 10 9 7 33 33 H 1.09000 * 109.56246 * 185.55622 * 11 10 9 34 34 H 1.08998 * 109.38399 * 65.52083 * 11 10 9 35 35 H 1.09000 * 109.45873 * 301.21767 * 12 11 10 36 36 H 1.00902 * 110.99849 * 320.97927 * 13 12 11 37 37 H 1.09002 * 109.46965 * 299.99714 * 14 13 12 38 38 H 1.08993 * 109.46932 * 59.99473 * 14 13 12 39 39 H 1.09002 * 109.46888 * 299.99654 * 15 14 13 40 40 H 1.08993 * 109.47743 * 59.99863 * 15 14 13 41 41 H 1.09002 * 109.47033 * 299.99526 * 16 15 14 42 42 H 1.09004 * 109.47505 * 59.99479 * 16 15 14 43 43 H 0.96995 * 120.00281 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.49225 * 178.68146 * 25 12 11 45 45 H 1.08997 * 109.52481 * 58.59879 * 25 12 11 46 46 H 1.09008 * 109.58249 * 246.15560 * 26 9 7 47 47 H 1.08998 * 109.58312 * 6.43366 * 26 9 7 48 48 H 1.08002 * 119.99872 * 179.72452 * 27 6 5 49 49 H 1.07997 * 119.99995 * 180.29387 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2669 -0.9672 -0.7250 5 6 4.6442 -0.9660 -0.7252 6 6 5.3418 0.0030 -0.0012 7 6 6.8209 0.0044 -0.0021 8 8 7.4296 -1.0461 -0.0592 9 7 7.4937 1.1708 0.0550 10 6 6.7776 2.4520 -0.0116 11 6 7.3827 3.3029 -1.1267 12 6 8.8907 3.4361 -0.9026 13 7 9.4693 4.2790 -1.9574 14 6 9.3548 5.7031 -1.6156 15 6 9.9663 6.5472 -2.7356 16 6 9.8476 8.0304 -2.3792 17 6 10.4504 8.8618 -3.4821 18 1 10.8760 8.3805 -4.3502 19 6 10.4586 10.2370 -3.3829 20 7 9.9399 10.8232 -2.3261 21 14 11.2065 11.2676 -4.7497 22 1 10.4843 11.0038 -6.0202 23 1 11.0901 12.7072 -4.4043 24 1 12.6389 10.9110 -4.9113 25 6 9.5387 2.0503 -0.9443 26 6 8.9577 1.1853 0.1785 27 6 4.6433 0.9673 0.7281 28 6 3.2660 0.9697 0.7243 29 1 2.7275 -1.7166 -1.2850 30 1 5.1847 -1.7146 -1.2853 31 1 5.7237 2.2711 -0.2228 32 1 6.8771 2.9760 0.9390 33 1 6.9251 4.2922 -1.1201 34 1 7.1987 2.8233 -2.0881 35 1 9.0743 3.8938 0.0695 36 1 9.0409 4.0859 -2.8503 37 1 8.3034 5.9648 -1.4966 38 1 9.8852 5.8967 -0.6832 39 1 11.0177 6.2856 -2.8550 40 1 9.4356 6.3536 -3.6677 41 1 8.7963 8.2923 -2.2595 42 1 10.3786 8.2238 -1.4471 43 1 9.9460 11.7906 -2.2561 44 1 10.6157 2.1482 -0.8079 45 1 9.3349 1.5817 -1.9071 46 1 9.2386 1.6039 1.1450 47 1 9.3415 0.1686 0.0952 48 1 5.1830 1.7140 1.2916 49 1 2.7258 1.7185 1.2846 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173426099.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:28 Heat of formation + Delta-G solvation = -2.513921 kcal Electronic energy + Delta-G solvation = -28040.844588 eV Core-core repulsion = 24159.656326 eV Total energy + Delta-G solvation = -3881.188262 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.78303 -40.03266 -39.02969 -37.51821 -37.05756 -35.49391 -33.91732 -33.04752 -32.27143 -31.61846 -31.20663 -28.09057 -26.50243 -24.96595 -24.60244 -23.64173 -23.49243 -22.19971 -21.68252 -20.40383 -20.06456 -18.57270 -18.43156 -17.42964 -16.75562 -16.57651 -16.33558 -16.05337 -15.97201 -15.67739 -15.53849 -15.41591 -15.13611 -14.90467 -14.68288 -14.54899 -14.39811 -14.29286 -13.93769 -13.77999 -13.63130 -13.54283 -13.27795 -13.15107 -12.99951 -12.74575 -12.65778 -12.45282 -12.24226 -12.20143 -12.08324 -11.84405 -11.61817 -11.47048 -11.32216 -11.04397 -10.97678 -10.52743 -10.11477 -10.01652 -9.72427 -9.21531 -8.18499 -6.28947 -0.63623 0.27220 1.39133 1.41290 1.43842 1.51781 1.54618 1.83769 2.09273 2.42254 2.72657 2.80050 3.14596 3.21960 3.35549 3.72834 3.81651 3.84693 3.98569 4.05367 4.16658 4.19946 4.32264 4.33876 4.37306 4.44057 4.50678 4.60297 4.63267 4.72377 4.76972 4.83202 4.92123 4.94473 4.96259 5.01937 5.08847 5.16054 5.17715 5.19668 5.25873 5.28932 5.32771 5.52856 5.55311 5.64637 5.79459 5.89062 6.15848 6.29957 6.31256 6.36436 6.54173 6.88073 7.02078 7.40065 8.92877 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013836 B = 0.001796 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.243418 B =15585.667069 C =17074.342010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.277 3.723 3 C -0.012 4.012 4 C -0.066 4.066 5 C -0.072 4.072 6 C -0.110 4.110 7 C 0.555 3.445 8 O -0.574 6.574 9 N -0.599 5.599 10 C 0.094 3.906 11 C -0.162 4.162 12 C 0.087 3.913 13 N -0.690 5.690 14 C 0.076 3.924 15 C -0.095 4.095 16 C 0.026 3.974 17 C -0.544 4.544 18 H 0.057 0.943 19 C 0.000 4.000 20 N -0.932 5.932 21 Si 0.962 3.038 22 H -0.267 1.267 23 H -0.283 1.283 24 H -0.268 1.268 25 C -0.112 4.112 26 C 0.114 3.886 27 C -0.089 4.089 28 C -0.065 4.065 29 H 0.157 0.843 30 H 0.142 0.858 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.342 0.658 37 H 0.029 0.971 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.048 0.952 41 H -0.007 1.007 42 H -0.008 1.008 43 H 0.263 0.737 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.167 0.833 49 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.628 -24.427 8.043 28.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.038 4.038 3 C -0.016 4.016 4 C -0.087 4.087 5 C -0.091 4.091 6 C -0.114 4.114 7 C 0.344 3.656 8 O -0.455 6.455 9 N -0.330 5.330 10 C -0.028 4.028 11 C -0.202 4.202 12 C -0.023 4.023 13 N -0.320 5.320 14 C -0.053 4.053 15 C -0.133 4.133 16 C -0.012 4.012 17 C -0.582 4.582 18 H 0.076 0.924 19 C -0.198 4.198 20 N -0.572 5.572 21 Si 0.787 3.213 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.193 1.193 25 C -0.151 4.151 26 C -0.009 4.009 27 C -0.107 4.107 28 C -0.086 4.086 29 H 0.175 0.825 30 H 0.160 0.840 31 H 0.134 0.866 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.160 0.840 37 H 0.048 0.952 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.012 0.988 42 H 0.010 0.990 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.075 0.925 46 H 0.106 0.894 47 H 0.101 0.899 48 H 0.184 0.816 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.424 -24.838 8.330 28.994 hybrid contribution -0.033 1.025 -0.858 1.337 sum -12.457 -23.813 7.472 27.894 Atomic orbital electron populations 1.81332 1.13512 1.09057 1.09478 1.25866 0.92726 0.92601 0.92599 1.16224 0.83341 0.99567 1.02466 1.21291 0.93386 0.97204 0.96794 1.21202 0.93663 0.96879 0.97363 1.20130 0.92070 0.98224 1.01007 1.18686 0.87870 0.83276 0.75733 1.90779 1.70457 1.32456 1.51801 1.48110 1.07815 1.06047 1.71061 1.22379 0.97903 0.82505 0.99965 1.22561 0.96902 1.00928 0.99781 1.21624 0.91761 0.93378 0.95557 1.60540 1.61619 1.04139 1.05659 1.21813 0.98217 0.87039 0.98236 1.21386 0.99954 0.94485 0.97429 1.18965 0.94956 0.92041 0.95244 1.21690 1.38591 0.92178 1.05769 0.92437 1.25956 0.95936 0.99573 0.98352 1.70075 1.46699 1.10187 1.30257 0.85542 0.79205 0.77253 0.79300 1.19226 1.20816 1.19319 1.21789 1.00901 0.93892 0.98515 1.21678 0.78451 1.01425 0.99312 1.21678 0.93959 0.97202 0.97886 1.21393 0.93695 0.97015 0.96461 0.82500 0.84039 0.86619 0.88483 0.90143 0.91630 0.90171 0.83952 0.95246 0.92022 0.93285 0.93323 0.98847 0.98990 0.92793 0.90063 0.92468 0.89437 0.89878 0.81596 0.81860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.80 18.54 19.00 0.35 -8.44 16 2 C 0.28 3.60 15.32 88.33 1.35 4.96 16 3 C -0.01 -0.10 5.73 -21.34 -0.12 -0.22 16 4 C -0.07 -0.48 9.73 22.50 0.22 -0.26 16 5 C -0.07 -0.73 9.59 22.48 0.22 -0.52 16 6 C -0.11 -1.26 5.33 -20.04 -0.11 -1.36 16 7 C 0.55 9.46 7.40 86.81 0.64 10.10 16 8 O -0.57 -14.35 16.20 -3.84 -0.06 -14.41 16 9 N -0.60 -8.24 2.98 -823.08 -2.45 -10.70 16 10 C 0.09 0.87 4.72 86.22 0.41 1.28 16 11 C -0.16 -2.22 5.31 30.53 0.16 -2.06 16 12 C 0.09 1.54 2.43 44.94 0.11 1.65 16 13 N -0.69 -16.62 6.25 -491.44 -3.07 -19.69 16 14 C 0.08 2.31 5.48 86.30 0.47 2.78 16 15 C -0.09 -3.73 5.41 30.59 0.17 -3.56 16 16 C 0.03 1.32 4.97 29.85 0.15 1.46 16 17 C -0.54 -30.78 9.11 25.60 0.23 -30.54 16 18 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 19 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 20 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 21 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 C -0.11 -1.87 5.69 30.67 0.17 -1.69 16 26 C 0.11 1.69 6.44 86.36 0.56 2.25 16 27 C -0.09 -0.54 7.34 22.49 0.17 -0.38 16 28 C -0.07 -0.34 9.73 22.50 0.22 -0.12 16 29 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 30 H 0.14 1.49 7.97 -2.91 -0.02 1.47 16 31 H 0.12 0.70 4.40 -2.39 -0.01 0.69 16 32 H 0.10 0.57 8.04 -2.39 -0.02 0.55 16 33 H 0.08 1.16 7.42 -2.39 -0.02 1.14 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.44 7.80 -2.39 -0.02 1.42 16 36 H 0.34 7.88 8.48 -89.69 -0.76 7.12 16 37 H 0.03 0.87 7.41 -2.39 -0.02 0.85 16 38 H 0.06 1.95 8.05 -2.39 -0.02 1.93 16 39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 41 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 42 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 43 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 44 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 47 H 0.08 1.49 7.00 -2.39 -0.02 1.47 16 48 H 0.17 0.38 5.91 -2.91 -0.02 0.36 16 49 H 0.16 0.16 8.06 -2.91 -0.02 0.14 16 Total: -1.00 -73.29 403.10 2.76 -70.53 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 0.20 Total: 8.35 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 5.48 Total: -15.80 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -4.88 Total: -94.57 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.06 Total: -14.41 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -73.29 2.76 -70.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173426099.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.017 kcal (2) G-P(sol) polarization free energy of solvation -73.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds