Wall clock time and date at job start Sat Apr 11 2020 06:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86797 * 120.00151 * 2 1 4 4 H 1.48497 * 109.47272 * 240.00091 * 3 2 1 5 5 H 1.48507 * 109.47215 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47441 * 119.99900 * 3 2 1 7 7 C 1.38951 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99989 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99858 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00039 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99856 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00082 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47193 * 176.59932 * 12 10 9 14 14 C 1.46260 * 111.00197 * 64.47133 * 13 12 10 15 15 C 1.47545 * 114.37389 * 148.55508 * 14 13 12 16 16 C 1.54948 * 109.73449 * 62.21843 * 15 14 13 17 17 N 1.44677 * 109.52522 * 290.52607 * 16 15 14 18 18 C 1.34777 * 118.54447 * 269.04890 * 17 16 15 19 19 O 1.21278 * 119.99838 * 5.48095 * 18 17 16 20 20 C 1.50699 * 119.99718 * 185.47443 * 18 17 16 21 21 F 1.39901 * 110.01777 * 44.40660 * 20 18 17 22 22 C 1.54260 * 110.03625 * 282.96032 * 20 18 17 23 23 C 1.54894 * 104.19599 * 217.10786 * 22 20 18 24 24 C 1.54881 * 102.74836 * 37.94023 * 23 22 20 25 25 C 1.53875 * 110.02791 * 165.79214 * 20 18 17 26 26 C 1.47778 * 122.90755 * 89.07648 * 17 16 15 27 27 C 1.44772 * 110.99574 * 300.98231 * 13 12 10 28 28 H 0.97002 * 119.99928 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99773 * 359.97438 * 9 7 2 30 30 H 1.09006 * 109.47062 * 296.59580 * 12 10 9 31 31 H 1.09000 * 109.47491 * 56.59794 * 12 10 9 32 32 H 1.08998 * 108.50537 * 269.81823 * 14 13 12 33 33 H 1.09002 * 108.50172 * 27.45046 * 14 13 12 34 34 H 1.09000 * 109.42788 * 182.30213 * 15 14 13 35 35 H 1.09004 * 109.42638 * 302.19403 * 15 14 13 36 36 H 1.09003 * 109.46009 * 50.54259 * 16 15 14 37 37 H 1.08999 * 109.46066 * 170.50388 * 16 15 14 38 38 H 1.08998 * 110.49025 * 335.78229 * 22 20 18 39 39 H 1.09002 * 110.48393 * 98.42980 * 22 20 18 40 40 H 1.09004 * 110.75218 * 279.62720 * 23 22 20 41 41 H 1.09003 * 110.75544 * 156.26138 * 23 22 20 42 42 H 1.08997 * 110.48935 * 203.37859 * 24 23 22 43 43 H 1.09001 * 110.48871 * 80.73991 * 24 23 22 44 44 H 1.09005 * 110.03317 * 238.56865 * 25 20 18 45 45 H 1.08994 * 110.03654 * 0.02562 * 25 20 18 46 46 H 1.09001 * 109.06368 * 78.64026 * 26 17 16 47 47 H 1.09000 * 109.06547 * 197.64721 * 26 17 16 48 48 H 1.09000 * 109.43577 * 337.92119 * 27 13 12 49 49 H 1.09002 * 109.43292 * 97.79786 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0011 12 6 1.2437 -4.8629 -0.0034 13 7 2.1962 -5.9782 -0.0851 14 6 3.0450 -6.0310 1.1048 15 6 3.4739 -7.3900 1.4870 16 6 4.3308 -8.0066 0.3528 17 7 3.4908 -8.2824 -0.7924 18 6 2.9121 -9.4958 -0.8893 19 8 3.0188 -10.2927 0.0186 20 6 2.1324 -9.8621 -2.1259 21 9 2.8357 -9.4687 -3.2695 22 6 0.7469 -9.1844 -2.0971 23 6 -0.2047 -10.2392 -2.7144 24 6 0.3483 -11.5709 -2.1491 25 6 1.8790 -11.3795 -2.1589 26 6 3.2397 -7.2929 -1.8609 27 6 3.0029 -5.8846 -1.2836 28 1 -0.4850 0.8401 0.0004 29 1 0.3533 -2.3906 -0.0016 30 1 0.6625 -4.9481 0.9149 31 1 0.5731 -4.8941 -0.8621 32 1 3.9334 -5.4263 0.9232 33 1 2.4967 -5.5960 1.9404 34 1 4.0648 -7.3400 2.4016 35 1 2.5957 -8.0131 1.6565 36 1 5.1148 -7.3051 0.0676 37 1 4.7835 -8.9342 0.7030 38 1 0.4534 -8.9596 -1.0718 39 1 0.7536 -8.2769 -2.7008 40 1 -0.1422 -10.2259 -3.8026 41 1 -1.2302 -10.0751 -2.3833 42 1 0.0641 -12.4050 -2.7906 43 1 -0.0095 -11.7315 -1.1321 44 1 2.3032 -11.8092 -3.0664 45 1 2.3196 -11.8508 -1.2804 46 1 4.1007 -7.2637 -2.5286 47 1 2.3598 -7.5967 -2.4279 48 1 2.4856 -5.2722 -2.0221 49 1 3.9616 -5.4263 -1.0406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196375980.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:39 Heat of formation + Delta-G solvation = -107.267315 kcal Electronic energy + Delta-G solvation = -31925.536027 eV Core-core repulsion = 27609.036093 eV Total energy + Delta-G solvation = -4316.499934 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.09798 -40.40356 -39.15207 -37.52938 -36.76354 -34.88916 -33.82409 -32.92137 -31.37563 -29.40465 -29.16255 -28.94025 -26.48491 -25.64854 -24.10599 -22.91647 -21.27289 -20.95396 -20.56008 -19.27258 -19.02082 -17.99210 -17.72393 -16.84749 -16.12465 -15.88619 -15.79068 -15.36798 -15.22641 -14.90548 -14.62683 -14.47151 -14.27432 -13.96413 -13.82599 -13.65635 -13.39608 -13.28982 -13.12418 -12.80225 -12.36010 -12.09022 -12.00759 -11.74816 -11.67885 -11.62196 -11.40884 -11.33197 -11.19411 -11.04016 -10.97833 -10.91441 -10.81024 -10.64099 -10.51095 -10.35851 -10.30501 -9.68301 -9.56239 -9.17519 -8.57433 -8.06884 -7.65240 -6.50868 -3.92456 2.41672 2.90029 3.12263 3.19617 3.23433 3.77577 3.94528 4.08584 4.10180 4.15113 4.30205 4.40227 4.87995 4.91177 5.00226 5.03511 5.06537 5.14914 5.17646 5.18459 5.20978 5.30778 5.34934 5.42603 5.57969 5.63248 5.63918 5.73243 5.80842 5.82272 5.84907 5.86436 5.94470 5.97661 6.02108 6.04288 6.08177 6.14754 6.28740 6.37801 6.56127 6.67958 7.22480 7.35765 7.43680 7.45511 7.94707 8.03542 8.49429 9.07167 9.43217 9.93148 10.65684 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.019767 B = 0.002725 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.137676 B =10271.225575 C =10886.036273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.303 4.303 8 H 0.102 0.898 9 N -0.556 5.556 10 C 0.405 3.595 11 O -0.597 6.597 12 C 0.044 3.956 13 N -0.507 5.507 14 C 0.053 3.947 15 C -0.127 4.127 16 C 0.117 3.883 17 N -0.577 5.577 18 C 0.503 3.497 19 O -0.534 6.534 20 C 0.101 3.899 21 F -0.194 7.194 22 C -0.137 4.137 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.140 4.140 26 C 0.106 3.894 27 C 0.046 3.954 28 H 0.273 0.727 29 H 0.393 0.607 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.067 0.933 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.015 -19.306 -4.496 19.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.177 4.177 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.433 4.433 8 H 0.119 0.881 9 N -0.191 5.191 10 C 0.190 3.810 11 O -0.484 6.484 12 C -0.087 4.087 13 N -0.229 5.229 14 C -0.074 4.074 15 C -0.166 4.166 16 C -0.006 4.006 17 N -0.307 5.307 18 C 0.288 3.712 19 O -0.411 6.411 20 C 0.080 3.920 21 F -0.175 7.175 22 C -0.175 4.175 23 C -0.162 4.162 24 C -0.159 4.159 25 C -0.178 4.178 26 C -0.016 4.016 27 C -0.083 4.083 28 H 0.083 0.917 29 H 0.226 0.774 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.117 0.883 46 H 0.085 0.915 47 H 0.105 0.895 48 H 0.095 0.905 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.494 -19.932 -4.058 20.347 hybrid contribution 0.272 1.984 -0.059 2.004 sum 0.766 -17.948 -4.117 18.430 Atomic orbital electron populations 1.69600 1.05963 1.28452 1.49866 1.25284 0.95622 0.99819 0.97024 0.85927 0.78820 0.80452 0.79092 1.19871 1.20874 1.19889 1.19651 0.93315 0.82380 1.47957 0.88055 1.42011 1.09288 1.04893 1.62941 1.21032 0.88897 0.85977 0.85111 1.90486 1.13800 1.87156 1.56922 1.22226 0.95135 0.87985 1.03403 1.61308 1.18533 1.40587 1.02496 1.20980 0.97799 0.96129 0.92539 1.21345 1.00329 0.97321 0.97559 1.21503 0.92459 1.00905 0.85693 1.47536 1.47146 1.12625 1.23398 1.20671 0.79645 0.82295 0.88578 1.90663 1.59896 1.50377 1.40188 1.21799 0.92171 0.97339 0.80715 1.92886 1.80584 1.92186 1.51830 1.23005 0.91465 0.99069 1.03924 1.22542 0.99059 0.94006 1.00553 1.22338 0.93926 0.97819 1.01777 1.22721 0.98124 0.92032 1.04929 1.22532 1.01738 0.88978 0.88397 1.22327 0.99050 0.93915 0.93053 0.91671 0.77386 0.89392 0.89365 0.91967 0.92345 0.90694 0.91323 0.90686 0.90220 0.88941 0.89113 0.90894 0.90518 0.90954 0.90907 0.90048 0.88253 0.91474 0.89479 0.90497 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.79 13.05 55.50 0.72 -23.06 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 8 H 0.10 2.86 7.16 -52.49 -0.38 2.49 16 9 N -0.56 -13.39 5.29 -10.97 -0.06 -13.45 16 10 C 0.40 8.78 7.08 -10.99 -0.08 8.70 16 11 O -0.60 -14.53 12.12 5.54 0.07 -14.46 16 12 C 0.04 0.73 5.49 -4.98 -0.03 0.70 16 13 N -0.51 -7.75 4.37 -241.04 -1.05 -8.81 16 14 C 0.05 0.83 4.02 -6.80 -0.03 0.81 16 15 C -0.13 -1.69 6.02 -28.33 -0.17 -1.86 16 16 C 0.12 1.53 5.40 -3.99 -0.02 1.50 16 17 N -0.58 -7.63 2.53 -172.21 -0.44 -8.07 16 18 C 0.50 6.88 6.54 -10.99 -0.07 6.81 16 19 O -0.53 -8.50 14.78 5.56 0.08 -8.42 16 20 C 0.10 1.15 1.08 -90.66 -0.10 1.05 16 21 F -0.19 -2.32 14.58 2.25 0.03 -2.29 16 22 C -0.14 -1.35 5.35 -25.07 -0.13 -1.48 16 23 C -0.12 -0.99 6.91 -24.74 -0.17 -1.16 16 24 C -0.12 -0.98 6.83 -25.08 -0.17 -1.15 16 25 C -0.14 -1.40 6.22 -25.61 -0.16 -1.56 16 26 C 0.11 1.34 5.32 -2.80 -0.01 1.32 16 27 C 0.05 0.69 4.24 -4.43 -0.02 0.67 16 28 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.39 9.12 7.90 -40.82 -0.32 8.80 16 30 H 0.09 1.36 7.91 -51.93 -0.41 0.95 16 31 H 0.09 1.30 8.08 -51.93 -0.42 0.88 16 32 H 0.06 1.12 5.87 -51.93 -0.30 0.82 16 33 H 0.06 0.96 7.54 -51.93 -0.39 0.56 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 37 H 0.08 1.03 7.33 -51.93 -0.38 0.65 16 38 H 0.09 1.00 7.85 -51.93 -0.41 0.60 16 39 H 0.09 0.87 6.66 -51.93 -0.35 0.52 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.73 8.02 -51.93 -0.42 0.32 16 45 H 0.10 1.13 6.50 -51.93 -0.34 0.79 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.09 1.02 3.63 -51.93 -0.19 0.83 16 48 H 0.08 1.19 7.46 -51.93 -0.39 0.80 16 49 H 0.07 1.18 6.17 -51.93 -0.32 0.86 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -29.99 374.76 -8.95 -38.94 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -7.52 Total: 11.84 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -1.40 Total: 6.61 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.82 Total: -53.39 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: 0.15 Total: -22.88 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.03 Total: -2.29 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.99 -8.95 -38.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196375980.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.330 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds