Wall clock time and date at job start Sat Apr 11 2020 06:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86797 * 120.00151 * 2 1 4 4 H 1.48497 * 109.47272 * 240.00091 * 3 2 1 5 5 H 1.48507 * 109.47215 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47441 * 119.99900 * 3 2 1 7 7 C 1.38951 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99989 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99858 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00039 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99856 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00082 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47193 * 176.59932 * 12 10 9 14 14 C 1.46260 * 111.00197 * 64.47133 * 13 12 10 15 15 C 1.47545 * 114.37389 * 148.55508 * 14 13 12 16 16 C 1.54948 * 109.73449 * 62.21843 * 15 14 13 17 17 N 1.44677 * 109.52522 * 290.52607 * 16 15 14 18 18 C 1.34777 * 118.54447 * 269.04890 * 17 16 15 19 19 O 1.21278 * 119.99838 * 5.48095 * 18 17 16 20 20 C 1.50699 * 119.99718 * 185.47443 * 18 17 16 21 21 F 1.39901 * 110.01777 * 44.40660 * 20 18 17 22 22 C 1.54260 * 110.03625 * 282.96032 * 20 18 17 23 23 C 1.54894 * 104.19599 * 217.10786 * 22 20 18 24 24 C 1.54881 * 102.74836 * 37.94023 * 23 22 20 25 25 C 1.53875 * 110.02791 * 165.79214 * 20 18 17 26 26 C 1.47778 * 122.90755 * 89.07648 * 17 16 15 27 27 C 1.44772 * 110.99574 * 300.98231 * 13 12 10 28 28 H 0.97002 * 119.99928 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99773 * 359.97438 * 9 7 2 30 30 H 1.09006 * 109.47062 * 296.59580 * 12 10 9 31 31 H 1.09000 * 109.47491 * 56.59794 * 12 10 9 32 32 H 1.08998 * 108.50537 * 269.81823 * 14 13 12 33 33 H 1.09002 * 108.50172 * 27.45046 * 14 13 12 34 34 H 1.09000 * 109.42788 * 182.30213 * 15 14 13 35 35 H 1.09004 * 109.42638 * 302.19403 * 15 14 13 36 36 H 1.09003 * 109.46009 * 50.54259 * 16 15 14 37 37 H 1.08999 * 109.46066 * 170.50388 * 16 15 14 38 38 H 1.08998 * 110.49025 * 335.78229 * 22 20 18 39 39 H 1.09002 * 110.48393 * 98.42980 * 22 20 18 40 40 H 1.09004 * 110.75218 * 279.62720 * 23 22 20 41 41 H 1.09003 * 110.75544 * 156.26138 * 23 22 20 42 42 H 1.08997 * 110.48935 * 203.37859 * 24 23 22 43 43 H 1.09001 * 110.48871 * 80.73991 * 24 23 22 44 44 H 1.09005 * 110.03317 * 238.56865 * 25 20 18 45 45 H 1.08994 * 110.03654 * 0.02562 * 25 20 18 46 46 H 1.09001 * 109.06368 * 78.64026 * 26 17 16 47 47 H 1.09000 * 109.06547 * 197.64721 * 26 17 16 48 48 H 1.09000 * 109.43577 * 337.92119 * 27 13 12 49 49 H 1.09002 * 109.43292 * 97.79786 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0011 12 6 1.2437 -4.8629 -0.0034 13 7 2.1962 -5.9782 -0.0851 14 6 3.0450 -6.0310 1.1048 15 6 3.4739 -7.3900 1.4870 16 6 4.3308 -8.0066 0.3528 17 7 3.4908 -8.2824 -0.7924 18 6 2.9121 -9.4958 -0.8893 19 8 3.0188 -10.2927 0.0186 20 6 2.1324 -9.8621 -2.1259 21 9 2.8357 -9.4687 -3.2695 22 6 0.7469 -9.1844 -2.0971 23 6 -0.2047 -10.2392 -2.7144 24 6 0.3483 -11.5709 -2.1491 25 6 1.8790 -11.3795 -2.1589 26 6 3.2397 -7.2929 -1.8609 27 6 3.0029 -5.8846 -1.2836 28 1 -0.4850 0.8401 0.0004 29 1 0.3533 -2.3906 -0.0016 30 1 0.6625 -4.9481 0.9149 31 1 0.5731 -4.8941 -0.8621 32 1 3.9334 -5.4263 0.9232 33 1 2.4967 -5.5960 1.9404 34 1 4.0648 -7.3400 2.4016 35 1 2.5957 -8.0131 1.6565 36 1 5.1148 -7.3051 0.0676 37 1 4.7835 -8.9342 0.7030 38 1 0.4534 -8.9596 -1.0718 39 1 0.7536 -8.2769 -2.7008 40 1 -0.1422 -10.2259 -3.8026 41 1 -1.2302 -10.0751 -2.3833 42 1 0.0641 -12.4050 -2.7906 43 1 -0.0095 -11.7315 -1.1321 44 1 2.3032 -11.8092 -3.0664 45 1 2.3196 -11.8508 -1.2804 46 1 4.1007 -7.2637 -2.5286 47 1 2.3598 -7.5967 -2.4279 48 1 2.4856 -5.2722 -2.0221 49 1 3.9616 -5.4263 -1.0406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196375980.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:38 Heat of formation + Delta-G solvation = -126.492633 kcal Electronic energy + Delta-G solvation = -31926.369700 eV Core-core repulsion = 27609.036093 eV Total energy + Delta-G solvation = -4317.333607 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.01594 -41.56871 -40.61015 -38.80893 -37.74476 -36.29701 -35.56048 -34.09652 -33.30790 -30.61879 -30.00670 -29.82057 -27.85811 -26.98898 -25.72258 -23.97588 -22.20560 -21.97851 -21.63719 -20.91239 -20.07712 -19.81402 -18.79908 -18.03403 -17.59456 -17.00718 -16.85766 -16.62081 -16.45663 -16.22481 -15.91812 -15.83680 -15.52359 -15.29824 -15.12783 -14.80096 -14.58666 -14.35048 -14.23184 -13.90432 -13.74718 -13.49795 -13.32231 -13.04747 -12.95497 -12.78035 -12.48202 -12.45732 -12.35383 -12.26228 -12.14974 -12.10088 -12.00731 -11.83179 -11.77006 -11.66523 -11.46994 -11.41193 -10.87593 -10.70205 -10.01904 -9.67939 -9.16996 -8.47395 -5.96770 1.35827 1.36577 1.39823 1.49808 1.86773 2.02089 2.27514 2.86536 3.08458 3.19437 3.24104 3.29929 3.41004 3.59925 3.84169 3.95951 4.01733 4.09687 4.21542 4.27702 4.31767 4.39493 4.41892 4.45169 4.46443 4.59999 4.64084 4.66666 4.72274 4.72546 4.78935 4.84901 4.89975 5.00103 5.02214 5.08113 5.13862 5.19621 5.23125 5.32709 5.39330 5.41983 5.57660 5.88599 6.02305 6.11824 6.24545 6.57573 6.96483 7.10653 7.54714 8.08661 8.68126 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.019767 B = 0.002725 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.137676 B =10271.225575 C =10886.036273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.989 3.011 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.332 4.332 8 H 0.078 0.922 9 N -0.570 5.570 10 C 0.409 3.591 11 O -0.624 6.624 12 C 0.053 3.947 13 N -0.496 5.496 14 C 0.061 3.939 15 C -0.116 4.116 16 C 0.117 3.883 17 N -0.579 5.579 18 C 0.498 3.502 19 O -0.560 6.560 20 C 0.100 3.900 21 F -0.197 7.197 22 C -0.136 4.136 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.140 4.140 26 C 0.115 3.885 27 C 0.051 3.949 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.035 0.965 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.101 0.899 48 H 0.074 0.926 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.992 -20.185 -5.386 20.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.211 4.211 3 Si 0.813 3.187 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.462 4.462 8 H 0.096 0.904 9 N -0.206 5.206 10 C 0.195 3.805 11 O -0.511 6.511 12 C -0.078 4.078 13 N -0.218 5.218 14 C -0.067 4.067 15 C -0.155 4.155 16 C -0.006 4.006 17 N -0.309 5.309 18 C 0.285 3.715 19 O -0.439 6.439 20 C 0.079 3.921 21 F -0.178 7.178 22 C -0.174 4.174 23 C -0.156 4.156 24 C -0.155 4.155 25 C -0.178 4.178 26 C -0.008 4.008 27 C -0.078 4.078 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.109 0.891 45 H 0.101 0.899 46 H 0.096 0.904 47 H 0.119 0.881 48 H 0.092 0.908 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.490 -20.826 -4.957 21.413 hybrid contribution 0.646 2.188 0.237 2.293 sum 0.156 -18.638 -4.720 19.227 Atomic orbital electron populations 1.69659 1.06775 1.29347 1.50126 1.25991 0.96472 1.02328 0.96321 0.85052 0.77821 0.77013 0.78856 1.19728 1.19587 1.19915 1.19589 0.92600 0.84156 1.49850 0.90417 1.42083 1.09375 1.04940 1.64245 1.22059 0.88820 0.87051 0.82529 1.90485 1.15470 1.87877 1.57317 1.22310 0.95123 0.84972 1.05433 1.61465 1.18437 1.39275 1.02595 1.20929 0.96502 0.96967 0.92294 1.21248 1.00276 0.95571 0.98429 1.21503 0.92503 1.00971 0.85659 1.47635 1.46986 1.12807 1.23484 1.21135 0.79337 0.81923 0.89146 1.90648 1.60835 1.51044 1.41378 1.21905 0.92322 0.98503 0.79412 1.92879 1.80794 1.92301 1.51798 1.23012 0.90897 0.99851 1.03620 1.22554 0.99141 0.92871 1.01001 1.22348 0.92290 0.98737 1.02122 1.22737 0.99655 0.90832 1.04589 1.22481 1.02873 0.87284 0.88115 1.22262 0.97492 0.95324 0.92742 0.91297 0.77025 0.87687 0.86770 0.94625 0.93168 0.89085 0.92061 0.90382 0.90076 0.89967 0.88648 0.89909 0.89222 0.89005 0.91292 0.89071 0.89941 0.90448 0.88085 0.90758 0.94057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.42 13.05 21.66 0.28 -48.14 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 3 Si 0.99 42.04 29.55 68.60 2.03 44.06 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.33 -18.17 9.68 84.04 0.81 -17.36 16 8 H 0.08 4.54 7.16 -2.91 -0.02 4.52 16 9 N -0.57 -27.73 5.29 -306.99 -1.62 -29.36 16 10 C 0.41 17.81 7.08 87.65 0.62 18.43 16 11 O -0.62 -31.02 12.12 -3.09 -0.04 -31.06 16 12 C 0.05 1.68 5.49 85.55 0.47 2.15 16 13 N -0.50 -14.74 4.37 -916.51 -4.01 -18.75 16 14 C 0.06 1.90 4.02 84.72 0.34 2.24 16 15 C -0.12 -3.05 6.02 29.56 0.18 -2.87 16 16 C 0.12 2.98 5.40 87.39 0.47 3.45 16 17 N -0.58 -14.82 2.53 -817.15 -2.07 -16.90 16 18 C 0.50 13.18 6.54 87.66 0.57 13.75 16 19 O -0.56 -17.60 14.78 -3.02 -0.04 -17.65 16 20 C 0.10 2.11 1.08 -10.82 -0.01 2.10 16 21 F -0.20 -4.33 14.58 44.97 0.66 -3.68 16 22 C -0.14 -2.39 5.35 31.67 0.17 -2.22 16 23 C -0.12 -1.54 6.91 31.88 0.22 -1.32 16 24 C -0.12 -1.62 6.83 31.67 0.22 -1.40 16 25 C -0.14 -2.57 6.22 31.32 0.19 -2.38 16 26 C 0.11 2.75 5.32 86.48 0.46 3.21 16 27 C 0.05 1.51 4.24 87.05 0.37 1.88 16 28 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 29 H 0.40 18.45 7.90 -92.70 -0.73 17.72 16 30 H 0.11 3.05 7.91 -2.38 -0.02 3.03 16 31 H 0.11 3.10 8.08 -2.39 -0.02 3.08 16 32 H 0.04 1.31 5.87 -2.39 -0.01 1.30 16 33 H 0.05 1.63 7.54 -2.39 -0.02 1.61 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.08 1.94 8.10 -2.39 -0.02 1.92 16 37 H 0.08 2.07 7.33 -2.39 -0.02 2.05 16 38 H 0.08 1.64 7.85 -2.39 -0.02 1.62 16 39 H 0.10 1.58 6.66 -2.39 -0.02 1.56 16 40 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.09 1.47 8.02 -2.38 -0.02 1.45 16 45 H 0.08 1.82 6.50 -2.39 -0.02 1.80 16 46 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.10 2.17 3.63 -2.39 -0.01 2.16 16 48 H 0.07 2.23 7.46 -2.39 -0.02 2.21 16 49 H 0.04 1.45 6.17 -2.39 -0.01 1.44 16 Total: -1.00 -64.95 374.76 0.98 -63.97 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: 0.24 Total: 37.94 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 5.55 Total: 19.55 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -7.42 Total: -113.14 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -0.08 Total: -48.71 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.66 Total: -3.68 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -64.95 0.98 -63.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196375980.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.519 kcal (2) G-P(sol) polarization free energy of solvation -64.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds