Wall clock time and date at job start Sat Apr 11 2020 06:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 119.99842 * 2 1 4 4 H 1.48501 * 109.47674 * 269.99946 * 3 2 1 5 5 H 1.48505 * 109.47463 * 30.00151 * 3 2 1 6 6 H 1.48505 * 109.47027 * 150.00040 * 3 2 1 7 7 C 1.37877 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99210 * 174.82520 * 7 2 1 9 9 C 1.50694 * 120.00486 * 354.82147 * 7 2 1 10 10 N 1.46497 * 110.01450 * 64.54869 * 9 7 2 11 11 C 1.34776 * 119.99981 * 63.32910 * 10 9 7 12 12 S 1.71195 * 119.99967 * 354.65034 * 11 10 9 13 13 N 1.34776 * 120.00108 * 174.65734 * 11 10 9 14 14 C 1.46502 * 120.00047 * 179.72395 * 13 11 10 15 15 C 1.53001 * 109.46784 * 180.27284 * 14 13 11 16 16 C 1.53001 * 109.46654 * 179.97438 * 15 14 13 17 17 N 1.46900 * 109.47046 * 179.97438 * 16 15 14 18 18 C 1.47012 * 110.99909 * 293.63286 * 17 16 15 19 19 C 1.53102 * 109.25773 * 177.60776 * 18 17 16 20 20 O 1.43016 * 109.26031 * 56.85026 * 19 18 17 21 21 C 1.43019 * 113.73703 * 301.33130 * 20 19 18 22 22 C 1.47011 * 111.00172 * 169.99987 * 17 16 15 23 23 C 1.54259 * 110.07497 * 185.97189 * 9 7 2 24 24 C 1.54884 * 104.20025 * 95.69526 * 23 9 7 25 25 C 1.54887 * 102.75009 * 37.94126 * 24 23 9 26 26 C 1.53879 * 110.03219 * 303.16257 * 9 7 2 27 27 H 0.97005 * 120.00356 * 5.00066 * 1 2 3 28 28 H 0.97005 * 120.00149 * 243.32139 * 10 9 7 29 29 H 0.97003 * 119.99825 * 359.97438 * 13 11 10 30 30 H 1.08996 * 109.46509 * 300.26726 * 14 13 11 31 31 H 1.08996 * 109.47226 * 60.27212 * 14 13 11 32 32 H 1.08996 * 109.47142 * 299.99054 * 15 14 13 33 33 H 1.08996 * 109.47298 * 59.99972 * 15 14 13 34 34 H 1.09002 * 109.47308 * 299.99633 * 16 15 14 35 35 H 1.09001 * 109.47379 * 59.99604 * 16 15 14 36 36 H 1.08998 * 109.50840 * 297.53823 * 18 17 16 37 37 H 1.08997 * 109.50793 * 57.67549 * 18 17 16 38 38 H 1.09002 * 109.50436 * 296.91248 * 19 18 17 39 39 H 1.09002 * 109.54368 * 176.80573 * 19 18 17 40 40 H 1.08998 * 109.50610 * 298.73868 * 21 20 19 41 41 H 1.08994 * 109.54395 * 178.62419 * 21 20 19 42 42 H 1.09006 * 109.50392 * 302.32447 * 22 17 16 43 43 H 1.09000 * 109.50904 * 62.41035 * 22 17 16 44 44 H 1.09002 * 110.48618 * 214.37774 * 23 9 7 45 45 H 1.09005 * 110.48885 * 337.01282 * 23 9 7 46 46 H 1.09001 * 110.75541 * 279.62638 * 24 23 9 47 47 H 1.09000 * 110.91668 * 156.33073 * 24 23 9 48 48 H 1.08998 * 110.49128 * 203.38021 * 25 24 23 49 49 H 1.09004 * 110.48690 * 80.73189 * 25 24 23 50 50 H 1.09005 * 110.03216 * 359.94624 * 26 9 7 51 51 H 1.08998 * 110.03627 * 121.37967 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0812 -1.1959 -0.0849 9 6 1.2557 -2.4966 0.1167 10 7 0.3981 -2.6891 -1.0554 11 6 0.9479 -2.8127 -2.2797 12 16 2.6352 -2.6083 -2.4848 13 7 0.1694 -3.0970 -3.3424 14 6 0.7662 -3.2253 -4.6742 15 6 -0.3285 -3.5417 -5.6952 16 6 0.2947 -3.6751 -7.0862 17 7 -0.7562 -3.9795 -8.0664 18 6 -1.3363 -5.3080 -7.8215 19 6 -2.4645 -5.5592 -8.8255 20 8 -1.9515 -5.4290 -10.1541 21 6 -1.3794 -4.1470 -10.4273 22 6 -0.2402 -3.8816 -9.4396 23 6 2.2498 -3.6694 0.2426 24 6 2.3625 -3.9097 1.7685 25 6 0.9118 -3.6778 2.2592 26 6 0.4049 -2.5019 1.3988 27 1 -0.4851 0.8369 -0.0732 28 1 -0.5655 -2.7278 -0.9503 29 1 -0.7866 -3.2131 -3.2261 30 1 1.2557 -2.2898 -4.9446 31 1 1.5004 -4.0309 -4.6673 32 1 -0.8180 -4.4773 -5.4249 33 1 -1.0627 -2.7362 -5.7022 34 1 0.7840 -2.7393 -7.3564 35 1 1.0292 -4.4805 -7.0796 36 1 -0.5657 -6.0695 -7.9420 37 1 -1.7350 -5.3498 -6.8080 38 1 -3.2597 -4.8301 -8.6693 39 1 -2.8603 -6.5651 -8.6851 40 1 -2.1430 -3.3769 -10.3177 41 1 -0.9898 -4.1311 -11.4451 42 1 0.1612 -2.8820 -9.6071 43 1 0.5484 -4.6197 -9.5856 44 1 1.8583 -4.5564 -0.2554 45 1 3.2192 -3.3941 -0.1729 46 1 3.0438 -3.1907 2.2235 47 1 2.6831 -4.9300 1.9792 48 1 0.9047 -3.4086 3.3154 49 1 0.3042 -4.5662 2.0868 50 1 0.5343 -1.5627 1.9368 51 1 -0.6460 -2.6478 1.1491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199959255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:46 Heat of formation + Delta-G solvation = -28.491701 kcal Electronic energy + Delta-G solvation = -28099.003667 eV Core-core repulsion = 24352.132875 eV Total energy + Delta-G solvation = -3746.870791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.90672 -38.65817 -37.29966 -36.19907 -33.80821 -32.37638 -31.60589 -31.15392 -28.01256 -27.77267 -26.95489 -24.53042 -24.35962 -23.78539 -22.55315 -21.45828 -20.66043 -19.80363 -19.17961 -17.37400 -17.00156 -16.70907 -16.49280 -15.86401 -15.62851 -15.39983 -15.11069 -14.73099 -14.69374 -14.48946 -14.14118 -14.01542 -13.72963 -13.39010 -12.94012 -12.62788 -12.41214 -12.28293 -12.01694 -11.77469 -11.61173 -11.49912 -11.35607 -11.01177 -10.92107 -10.81960 -10.69311 -10.50823 -10.37461 -10.19849 -10.08271 -10.01590 -9.94677 -9.71394 -9.34350 -9.21019 -8.73104 -8.46613 -7.95488 -6.53013 -6.10401 -6.02334 -3.93804 2.63384 3.09039 3.36653 3.38050 3.43332 3.49707 3.53992 3.76328 4.49500 4.50254 4.59156 4.62392 4.66372 4.80350 4.85526 4.95582 5.03931 5.11972 5.17841 5.27898 5.37736 5.38797 5.44756 5.51467 5.55658 5.64322 5.65715 5.72275 5.75626 5.76903 6.12202 6.18317 6.37780 6.43463 6.59681 6.60715 6.62859 6.65157 6.69053 6.78142 6.78563 6.84378 7.09467 7.12962 7.31819 7.39964 7.68657 7.97234 8.11377 8.32031 8.59992 9.05389 9.60555 11.01578 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.015991 B = 0.002411 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.553857 B =11612.105394 C =12388.748620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.062 3.938 3 Si 0.895 3.105 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.455 4.455 8 H 0.075 0.925 9 C 0.289 3.711 10 N -0.630 5.630 11 C 0.569 3.431 12 S -0.670 6.670 13 N -0.712 5.712 14 C 0.138 3.862 15 C -0.128 4.128 16 C 0.061 3.939 17 N -0.538 5.538 18 C 0.013 3.987 19 C 0.063 3.937 20 O -0.388 6.388 21 C 0.064 3.936 22 C 0.017 3.983 23 C -0.111 4.111 24 C -0.121 4.121 25 C -0.128 4.128 26 C -0.093 4.093 27 H 0.257 0.743 28 H 0.375 0.625 29 H 0.385 0.615 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.044 0.956 44 H 0.036 0.964 45 H 0.092 0.908 46 H 0.066 0.934 47 H 0.047 0.953 48 H 0.051 0.949 49 H 0.046 0.954 50 H 0.080 0.920 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.011 -10.199 -13.084 18.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.208 1.208 5 H -0.219 1.219 6 H -0.197 1.197 7 C -0.495 4.495 8 H 0.093 0.907 9 C 0.208 3.792 10 N -0.252 5.252 11 C 0.207 3.793 12 S -0.544 6.544 13 N -0.346 5.346 14 C 0.012 3.988 15 C -0.167 4.167 16 C -0.067 4.067 17 N -0.263 5.263 18 C -0.115 4.115 19 C -0.014 4.014 20 O -0.306 6.306 21 C -0.013 4.013 22 C -0.111 4.111 23 C -0.150 4.150 24 C -0.159 4.159 25 C -0.165 4.165 26 C -0.132 4.132 27 H 0.067 0.933 28 H 0.210 0.790 29 H 0.220 0.780 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.110 0.890 46 H 0.085 0.915 47 H 0.065 0.935 48 H 0.070 0.930 49 H 0.065 0.935 50 H 0.099 0.901 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.274 -9.726 -13.164 17.529 hybrid contribution -0.925 0.624 0.178 1.130 sum -7.199 -9.103 -12.986 17.416 Atomic orbital electron populations 1.69903 1.05893 1.26785 1.51204 1.24935 0.94822 0.99204 0.94974 0.86508 0.79931 0.83093 0.78137 1.20804 1.21852 1.19694 1.21302 0.94244 0.88090 1.45816 0.90727 1.19133 0.86171 0.94357 0.79558 1.46584 1.09570 1.63528 1.05526 1.21762 0.95113 0.80858 0.81612 1.92682 0.94503 1.74907 1.92310 1.44820 1.09410 1.73415 1.06999 1.21275 0.94860 1.03434 0.79201 1.21796 0.98760 1.02553 0.93551 1.21992 0.92150 1.01522 0.91054 1.62190 1.33346 1.28184 1.02561 1.22857 0.97950 0.89865 1.00802 1.22677 0.94982 1.02183 0.81527 1.87981 1.78291 1.33778 1.30575 1.22669 0.94776 0.85563 0.98337 1.22790 0.97117 1.02375 0.88856 1.22759 1.02460 0.96320 0.93476 1.22445 0.96398 0.99394 0.97641 1.22423 0.96849 0.98362 0.98907 1.22175 0.97135 0.97699 0.96150 0.93323 0.78994 0.77978 0.90396 0.90635 0.91664 0.90585 0.89901 0.94040 0.93822 0.89246 0.92224 0.88482 0.92208 0.88451 0.89386 0.93813 0.94542 0.88963 0.91519 0.93453 0.92975 0.93473 0.90133 0.94082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.45 11.80 55.43 0.65 -22.80 16 2 C 0.06 1.64 4.89 -17.82 -0.09 1.55 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.45 -11.80 5.85 -34.44 -0.20 -12.00 16 8 H 0.07 2.10 7.33 -52.49 -0.38 1.72 16 9 C 0.29 6.44 0.50 -131.86 -0.07 6.37 16 10 N -0.63 -13.09 4.56 -49.34 -0.23 -13.31 16 11 C 0.57 11.75 7.49 -86.92 -0.65 11.10 16 12 S -0.67 -16.27 23.91 -107.50 -2.57 -18.84 16 13 N -0.71 -11.27 5.56 -62.03 -0.34 -11.62 16 14 C 0.14 1.90 5.13 -4.04 -0.02 1.88 16 15 C -0.13 -1.30 5.26 -26.73 -0.14 -1.44 16 16 C 0.06 0.58 4.96 -3.82 -0.02 0.56 16 17 N -0.54 -4.95 4.73 -234.30 -1.11 -6.06 16 18 C 0.01 0.11 5.44 -3.71 -0.02 0.09 16 19 C 0.06 0.50 7.01 37.21 0.26 0.77 16 20 O -0.39 -3.77 10.83 -35.23 -0.38 -4.15 16 21 C 0.06 0.49 7.01 37.21 0.26 0.75 16 22 C 0.02 0.14 5.64 -3.71 -0.02 0.12 16 23 C -0.11 -2.33 4.51 -25.08 -0.11 -2.44 16 24 C -0.12 -2.20 6.91 -24.74 -0.17 -2.37 16 25 C -0.13 -2.24 6.83 -25.07 -0.17 -2.41 16 26 C -0.09 -1.93 5.28 -25.61 -0.14 -2.07 16 27 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 28 H 0.38 7.19 8.10 -40.82 -0.33 6.85 16 29 H 0.39 5.08 8.49 -40.82 -0.35 4.74 16 30 H 0.08 1.24 7.99 -51.93 -0.41 0.83 16 31 H 0.08 1.12 8.00 -51.93 -0.42 0.70 16 32 H 0.06 0.61 6.52 -51.93 -0.34 0.27 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 35 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 36 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.69 6.38 -51.93 -0.33 0.36 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.64 8.09 -51.93 -0.42 0.22 16 43 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.04 0.75 8.00 -51.93 -0.42 0.33 16 45 H 0.09 2.17 6.28 -51.93 -0.33 1.85 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.08 1.89 6.97 -51.93 -0.36 1.53 16 51 H 0.04 0.83 7.45 -51.93 -0.39 0.44 16 LS Contribution 398.58 15.07 6.01 6.01 Total: -1.00 -30.56 398.58 -13.38 -43.95 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -9.10 Total: 9.56 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -1.30 Total: 0.46 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -1.02 Total: -53.78 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -0.38 Total: -4.15 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: -16.27 SS G_CDS: -2.57 Total: -18.84 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.56 -13.38 -43.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199959255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.454 kcal (2) G-P(sol) polarization free energy of solvation -30.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds