Wall clock time and date at job start Sat Apr 11 2020 06:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 119.99842 * 2 1 4 4 H 1.48501 * 109.47674 * 269.99946 * 3 2 1 5 5 H 1.48505 * 109.47463 * 30.00151 * 3 2 1 6 6 H 1.48505 * 109.47027 * 150.00040 * 3 2 1 7 7 C 1.37877 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99210 * 174.82520 * 7 2 1 9 9 C 1.50694 * 120.00486 * 354.82147 * 7 2 1 10 10 N 1.46497 * 110.01450 * 64.54869 * 9 7 2 11 11 C 1.34776 * 119.99981 * 63.32910 * 10 9 7 12 12 S 1.71195 * 119.99967 * 354.65034 * 11 10 9 13 13 N 1.34776 * 120.00108 * 174.65734 * 11 10 9 14 14 C 1.46502 * 120.00047 * 179.72395 * 13 11 10 15 15 C 1.53001 * 109.46784 * 180.27284 * 14 13 11 16 16 C 1.53001 * 109.46654 * 179.97438 * 15 14 13 17 17 N 1.46900 * 109.47046 * 179.97438 * 16 15 14 18 18 C 1.47012 * 110.99909 * 293.63286 * 17 16 15 19 19 C 1.53102 * 109.25773 * 177.60776 * 18 17 16 20 20 O 1.43016 * 109.26031 * 56.85026 * 19 18 17 21 21 C 1.43019 * 113.73703 * 301.33130 * 20 19 18 22 22 C 1.47011 * 111.00172 * 169.99987 * 17 16 15 23 23 C 1.54259 * 110.07497 * 185.97189 * 9 7 2 24 24 C 1.54884 * 104.20025 * 95.69526 * 23 9 7 25 25 C 1.54887 * 102.75009 * 37.94126 * 24 23 9 26 26 C 1.53879 * 110.03219 * 303.16257 * 9 7 2 27 27 H 0.97005 * 120.00356 * 5.00066 * 1 2 3 28 28 H 0.97005 * 120.00149 * 243.32139 * 10 9 7 29 29 H 0.97003 * 119.99825 * 359.97438 * 13 11 10 30 30 H 1.08996 * 109.46509 * 300.26726 * 14 13 11 31 31 H 1.08996 * 109.47226 * 60.27212 * 14 13 11 32 32 H 1.08996 * 109.47142 * 299.99054 * 15 14 13 33 33 H 1.08996 * 109.47298 * 59.99972 * 15 14 13 34 34 H 1.09002 * 109.47308 * 299.99633 * 16 15 14 35 35 H 1.09001 * 109.47379 * 59.99604 * 16 15 14 36 36 H 1.08998 * 109.50840 * 297.53823 * 18 17 16 37 37 H 1.08997 * 109.50793 * 57.67549 * 18 17 16 38 38 H 1.09002 * 109.50436 * 296.91248 * 19 18 17 39 39 H 1.09002 * 109.54368 * 176.80573 * 19 18 17 40 40 H 1.08998 * 109.50610 * 298.73868 * 21 20 19 41 41 H 1.08994 * 109.54395 * 178.62419 * 21 20 19 42 42 H 1.09006 * 109.50392 * 302.32447 * 22 17 16 43 43 H 1.09000 * 109.50904 * 62.41035 * 22 17 16 44 44 H 1.09002 * 110.48618 * 214.37774 * 23 9 7 45 45 H 1.09005 * 110.48885 * 337.01282 * 23 9 7 46 46 H 1.09001 * 110.75541 * 279.62638 * 24 23 9 47 47 H 1.09000 * 110.91668 * 156.33073 * 24 23 9 48 48 H 1.08998 * 110.49128 * 203.38021 * 25 24 23 49 49 H 1.09004 * 110.48690 * 80.73189 * 25 24 23 50 50 H 1.09005 * 110.03216 * 359.94624 * 26 9 7 51 51 H 1.08998 * 110.03627 * 121.37967 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0812 -1.1959 -0.0849 9 6 1.2557 -2.4966 0.1167 10 7 0.3981 -2.6891 -1.0554 11 6 0.9479 -2.8127 -2.2797 12 16 2.6352 -2.6083 -2.4848 13 7 0.1694 -3.0970 -3.3424 14 6 0.7662 -3.2253 -4.6742 15 6 -0.3285 -3.5417 -5.6952 16 6 0.2947 -3.6751 -7.0862 17 7 -0.7562 -3.9795 -8.0664 18 6 -1.3363 -5.3080 -7.8215 19 6 -2.4645 -5.5592 -8.8255 20 8 -1.9515 -5.4290 -10.1541 21 6 -1.3794 -4.1470 -10.4273 22 6 -0.2402 -3.8816 -9.4396 23 6 2.2498 -3.6694 0.2426 24 6 2.3625 -3.9097 1.7685 25 6 0.9118 -3.6778 2.2592 26 6 0.4049 -2.5019 1.3988 27 1 -0.4851 0.8369 -0.0732 28 1 -0.5655 -2.7278 -0.9503 29 1 -0.7866 -3.2131 -3.2261 30 1 1.2557 -2.2898 -4.9446 31 1 1.5004 -4.0309 -4.6673 32 1 -0.8180 -4.4773 -5.4249 33 1 -1.0627 -2.7362 -5.7022 34 1 0.7840 -2.7393 -7.3564 35 1 1.0292 -4.4805 -7.0796 36 1 -0.5657 -6.0695 -7.9420 37 1 -1.7350 -5.3498 -6.8080 38 1 -3.2597 -4.8301 -8.6693 39 1 -2.8603 -6.5651 -8.6851 40 1 -2.1430 -3.3769 -10.3177 41 1 -0.9898 -4.1311 -11.4451 42 1 0.1612 -2.8820 -9.6071 43 1 0.5484 -4.6197 -9.5856 44 1 1.8583 -4.5564 -0.2554 45 1 3.2192 -3.3941 -0.1729 46 1 3.0438 -3.1907 2.2235 47 1 2.6831 -4.9300 1.9792 48 1 0.9047 -3.4086 3.3154 49 1 0.3042 -4.5662 2.0868 50 1 0.5343 -1.5627 1.9368 51 1 -0.6460 -2.6478 1.1491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199959255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:45 Heat of formation + Delta-G solvation = -48.276135 kcal Electronic energy + Delta-G solvation = -28099.861584 eV Core-core repulsion = 24352.132875 eV Total energy + Delta-G solvation = -3747.728709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.60226 -40.28618 -38.61705 -37.14376 -35.18753 -34.22875 -32.53565 -32.05094 -29.44438 -29.27382 -28.21156 -26.09124 -25.14327 -24.94813 -24.13479 -22.39873 -21.39579 -21.25237 -20.91066 -19.00378 -18.53090 -17.74055 -17.18881 -17.14980 -16.72927 -16.57071 -16.03986 -15.98114 -15.90077 -15.76406 -15.59174 -15.48835 -14.83061 -14.72017 -14.30112 -14.04356 -13.43598 -13.39180 -13.16302 -12.96899 -12.87595 -12.70024 -12.56494 -12.43375 -12.33407 -12.19765 -12.15202 -11.81973 -11.75907 -11.69443 -11.63891 -11.43908 -11.24422 -11.14047 -11.00878 -10.67857 -10.45035 -9.56506 -9.43920 -8.42985 -8.06191 -7.99133 -5.96431 0.92410 1.36957 1.41859 1.49205 1.50951 2.05655 2.49420 2.70854 2.95236 3.04243 3.43176 3.82490 3.91561 3.95884 4.03927 4.08173 4.11708 4.19221 4.20052 4.29446 4.30188 4.38807 4.50886 4.56965 4.65622 4.73948 4.78079 4.81402 4.81981 4.89612 4.96424 5.00385 5.01683 5.05265 5.08737 5.12643 5.17564 5.27774 5.31909 5.52492 5.58231 5.71796 5.78686 5.89042 5.91464 5.92939 6.08520 6.17141 6.41813 6.52948 6.94199 6.98789 7.57554 8.97214 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.015991 B = 0.002411 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.553857 B =11612.105394 C =12388.748620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.032 3.968 3 Si 0.928 3.072 4 H -0.297 1.297 5 H -0.283 1.283 6 H -0.276 1.276 7 C -0.458 4.458 8 H 0.042 0.958 9 C 0.285 3.715 10 N -0.627 5.627 11 C 0.582 3.418 12 S -0.746 6.746 13 N -0.688 5.688 14 C 0.142 3.858 15 C -0.110 4.110 16 C 0.064 3.936 17 N -0.544 5.544 18 C 0.013 3.987 19 C 0.062 3.938 20 O -0.407 6.407 21 C 0.063 3.937 22 C 0.016 3.984 23 C -0.103 4.103 24 C -0.116 4.116 25 C -0.116 4.116 26 C -0.087 4.087 27 H 0.255 0.745 28 H 0.388 0.612 29 H 0.405 0.595 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.039 0.961 36 H 0.037 0.963 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.112 0.888 40 H 0.061 0.939 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.038 0.962 44 H 0.039 0.961 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.075 0.925 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.050 0.950 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.062 -11.622 -13.117 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.168 4.168 3 Si 0.757 3.243 4 H -0.225 1.225 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.498 4.498 8 H 0.060 0.940 9 C 0.203 3.797 10 N -0.250 5.250 11 C 0.216 3.784 12 S -0.621 6.621 13 N -0.322 5.322 14 C 0.017 3.983 15 C -0.148 4.148 16 C -0.064 4.064 17 N -0.269 5.269 18 C -0.115 4.115 19 C -0.015 4.015 20 O -0.326 6.326 21 C -0.014 4.014 22 C -0.112 4.112 23 C -0.143 4.143 24 C -0.154 4.154 25 C -0.154 4.154 26 C -0.126 4.126 27 H 0.064 0.936 28 H 0.224 0.776 29 H 0.243 0.757 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.117 0.883 38 H 0.080 0.920 39 H 0.130 0.870 40 H 0.079 0.921 41 H 0.132 0.868 42 H 0.114 0.886 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.094 0.906 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.069 0.931 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.371 -11.157 -13.219 19.217 hybrid contribution -0.296 1.031 0.096 1.077 sum -8.667 -10.126 -13.123 18.705 Atomic orbital electron populations 1.69914 1.05756 1.26669 1.52061 1.25247 0.95496 1.00439 0.95583 0.86008 0.79354 0.81896 0.77023 1.22459 1.20867 1.20126 1.21257 0.92967 0.90081 1.45543 0.94008 1.19099 0.86814 0.93236 0.80521 1.46216 1.10009 1.63506 1.05236 1.21405 0.93967 0.80456 0.82606 1.92884 0.98316 1.77990 1.92898 1.44763 1.10083 1.70859 1.06499 1.21328 0.96062 1.02091 0.78822 1.21627 0.97238 1.03339 0.92591 1.21909 0.92253 1.01401 0.90849 1.62203 1.33075 1.28751 1.02863 1.22903 0.97901 0.89204 1.01485 1.22792 0.94737 1.03216 0.80760 1.87957 1.78506 1.34703 1.31454 1.22782 0.94580 0.84978 0.99074 1.22839 0.97210 1.02700 0.88461 1.22581 1.00362 0.95728 0.95591 1.22420 0.97027 1.00805 0.95160 1.22368 0.96117 0.97763 0.99162 1.22027 0.97279 0.97871 0.95408 0.93581 0.77559 0.75675 0.92518 0.91387 0.89986 0.90363 0.90176 0.94267 0.94495 0.88341 0.92036 0.86955 0.92057 0.86844 0.88580 0.94370 0.94192 0.92196 0.92578 0.90630 0.91220 0.91052 0.93094 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.84 11.80 21.45 0.25 -46.59 16 2 C 0.03 1.71 4.89 84.65 0.41 2.12 16 3 Si 0.93 45.39 29.54 68.60 2.03 47.42 16 4 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 5 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 6 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 7 C -0.46 -24.25 5.85 25.60 0.15 -24.10 16 8 H 0.04 2.46 7.33 -2.91 -0.02 2.44 16 9 C 0.29 12.61 0.50 3.58 0.00 12.61 16 10 N -0.63 -25.38 4.56 -310.01 -1.41 -26.79 16 11 C 0.58 23.70 7.49 179.05 1.34 25.04 16 12 S -0.75 -37.18 23.91 -56.49 -1.35 -38.53 16 13 N -0.69 -20.71 5.56 -350.18 -1.95 -22.66 16 14 C 0.14 3.79 5.13 86.38 0.44 4.23 16 15 C -0.11 -1.99 5.26 30.60 0.16 -1.83 16 16 C 0.06 1.13 4.96 86.30 0.43 1.56 16 17 N -0.54 -9.09 4.73 -895.21 -4.23 -13.32 16 18 C 0.01 0.19 5.44 86.32 0.47 0.66 16 19 C 0.06 0.87 7.01 72.02 0.50 1.37 16 20 O -0.41 -7.31 10.83 -148.98 -1.61 -8.92 16 21 C 0.06 0.88 7.01 72.02 0.50 1.38 16 22 C 0.02 0.24 5.64 86.32 0.49 0.73 16 23 C -0.10 -4.30 4.51 31.66 0.14 -4.16 16 24 C -0.12 -4.01 6.91 31.88 0.22 -3.79 16 25 C -0.12 -3.74 6.83 31.67 0.22 -3.52 16 26 C -0.09 -3.48 5.28 31.32 0.17 -3.32 16 27 H 0.26 13.10 8.32 -92.70 -0.77 12.33 16 28 H 0.39 14.03 8.10 -92.70 -0.75 13.28 16 29 H 0.41 9.53 8.49 -92.71 -0.79 8.74 16 30 H 0.06 1.81 7.99 -2.39 -0.02 1.79 16 31 H 0.07 1.98 8.00 -2.39 -0.02 1.96 16 32 H 0.08 1.26 6.52 -2.39 -0.02 1.25 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.46 8.04 -2.39 -0.02 1.45 16 35 H 0.04 0.72 8.12 -2.39 -0.02 0.70 16 36 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.10 1.26 6.38 -2.39 -0.02 1.24 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.10 1.26 8.09 -2.38 -0.02 1.24 16 43 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.04 1.60 8.00 -2.39 -0.02 1.58 16 45 H 0.06 2.89 6.28 -2.38 -0.01 2.88 16 46 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 50 H 0.05 2.34 6.97 -2.38 -0.02 2.33 16 51 H 0.05 1.82 7.45 -2.39 -0.02 1.80 16 Total: -1.00 -67.35 398.58 -3.25 -70.60 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: -0.62 Total: 29.79 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 5.65 Total: 9.00 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -7.34 Total: -109.36 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -1.61 Total: -8.92 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 16 Polarization: -37.18 SS G_CDS: -1.35 Total: -38.53 kcal Total: -67.35 -3.25 -70.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199959255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.320 kcal (2) G-P(sol) polarization free energy of solvation -67.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds