Wall clock time and date at job start Sat Apr 11 2020 06:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 119.99941 * 2 1 4 4 H 1.48506 * 109.47048 * 240.00001 * 3 2 1 5 5 H 1.48503 * 109.47310 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47310 * 120.00103 * 3 2 1 7 7 C 1.38954 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99685 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00379 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00169 * 180.02562 * 9 7 2 11 11 O 1.21286 * 119.99929 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99913 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47084 * 179.97438 * 12 10 9 14 14 C 1.46892 * 111.00108 * 179.97438 * 13 12 10 15 15 C 1.53045 * 109.46192 * 155.00003 * 14 13 12 16 16 C 1.53191 * 109.31363 * 181.37053 * 15 14 13 17 17 N 1.46918 * 108.77663 * 305.36674 * 16 15 14 18 18 C 1.34773 * 120.63045 * 233.58574 * 17 16 15 19 19 O 1.21285 * 120.00335 * 185.20186 * 18 17 16 20 20 C 1.50704 * 120.00059 * 5.19583 * 18 17 16 21 21 H 1.09000 * 110.01245 * 34.72807 * 20 18 17 22 22 C 1.53873 * 110.03160 * 156.11337 * 20 18 17 23 23 C 1.54264 * 106.59604 * 119.33474 * 22 20 18 24 24 C 1.54890 * 104.19861 * 23.61257 * 23 22 20 25 25 H 1.08992 * 110.75832 * 203.55895 * 24 23 22 26 26 F 1.39898 * 110.75717 * 80.36947 * 24 23 22 27 27 C 1.54261 * 110.03137 * 273.33177 * 20 18 17 28 28 C 1.46929 * 118.73957 * 53.85861 * 17 16 15 29 29 C 1.53045 * 109.45146 * 275.06160 * 14 13 12 30 30 H 0.97005 * 120.00043 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99458 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.46737 * 59.99922 * 12 10 9 33 33 H 1.08996 * 109.46881 * 299.99276 * 12 10 9 34 34 H 1.00905 * 111.00011 * 303.95650 * 13 12 10 35 35 H 1.08996 * 109.46011 * 35.02572 * 14 13 12 36 36 H 1.09000 * 109.49621 * 61.41834 * 15 14 13 37 37 H 1.09003 * 109.49358 * 301.32794 * 15 14 13 38 38 H 1.08998 * 109.58637 * 185.57770 * 16 15 14 39 39 H 1.09004 * 109.58127 * 65.15452 * 16 15 14 40 40 H 1.09001 * 110.03228 * 238.61735 * 22 20 18 41 41 H 1.09006 * 110.03280 * 0.05227 * 22 20 18 42 42 H 1.09003 * 110.48369 * 142.29105 * 23 22 20 43 43 H 1.08994 * 110.48837 * 264.92985 * 23 22 20 44 44 H 1.08997 * 110.49117 * 335.73341 * 27 20 18 45 45 H 1.09000 * 110.48358 * 98.37958 * 27 20 18 46 46 H 1.09001 * 109.58562 * 65.93207 * 28 17 16 47 47 H 1.09004 * 109.58707 * 186.35144 * 28 17 16 48 48 H 1.09005 * 109.49320 * 298.57709 * 29 14 13 49 49 H 1.09000 * 109.49679 * 58.63559 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9972 -3.5579 0.0026 11 8 3.2101 -3.5578 0.0022 12 6 1.2436 -4.8630 0.0032 13 7 2.1982 -5.9796 0.0037 14 6 1.4980 -7.2708 0.0049 15 6 2.4043 -8.3430 -0.6044 16 6 1.6583 -9.6807 -0.6329 17 7 1.1876 -9.9886 0.7243 18 6 1.4875 -11.1678 1.3041 19 8 1.0158 -11.4493 2.3854 20 6 2.4091 -12.1365 0.6088 21 1 3.1763 -11.5920 0.0584 22 6 3.0641 -13.0729 1.6392 23 6 2.6349 -14.5071 1.2667 24 6 2.2870 -14.4203 -0.2401 25 1 1.5995 -15.2168 -0.5243 26 9 3.4472 -14.4674 -1.0204 27 6 1.6039 -13.0334 -0.3540 28 6 0.3786 -8.9892 1.4353 29 6 1.1436 -7.6571 1.4428 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3906 0.0024 32 1 0.6174 -4.9212 -0.8870 33 1 0.6168 -4.9201 0.8930 34 1 2.8332 -5.9129 -0.7777 35 1 0.5849 -7.1893 -0.5847 36 1 3.3067 -8.4424 -0.0011 37 1 2.6753 -8.0557 -1.6204 38 1 2.3316 -10.4673 -0.9735 39 1 0.8055 -9.6091 -1.3080 40 1 4.1492 -12.9829 1.5888 41 1 2.7148 -12.8273 2.6421 42 1 3.4562 -15.2053 1.4290 43 1 1.7598 -14.8054 1.8438 44 1 0.5624 -13.0936 -0.0383 45 1 1.6730 -12.6561 -1.3743 46 1 -0.5764 -8.8625 0.9255 47 1 0.2072 -9.3196 2.4598 48 1 2.0578 -7.7629 2.0269 49 1 0.5177 -6.8815 1.8841 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202192655.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:03 Heat of formation + Delta-G solvation = -131.284186 kcal Electronic energy + Delta-G solvation = -29733.191872 eV Core-core repulsion = 25415.650488 eV Total energy + Delta-G solvation = -4317.541384 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.00576 -40.78210 -38.71911 -37.91434 -36.81907 -35.15888 -33.87838 -31.72956 -31.42523 -31.07631 -29.42036 -28.97895 -26.88367 -24.78702 -23.94709 -23.18701 -21.96025 -21.29803 -20.30025 -19.33906 -18.95161 -18.06310 -17.86984 -16.85806 -16.39150 -16.10206 -15.93762 -15.61129 -15.33209 -15.14530 -14.87314 -14.65065 -14.48037 -14.21891 -13.91765 -13.81061 -13.65339 -13.46129 -13.13745 -12.99707 -12.66080 -12.35708 -12.21889 -12.03790 -11.85045 -11.71877 -11.62464 -11.46197 -11.39363 -11.32132 -11.28025 -11.05411 -10.93033 -10.79230 -10.64579 -10.45236 -10.22540 -9.93379 -9.51385 -8.94246 -8.47307 -8.10584 -7.97527 -6.42952 -3.83864 2.30144 2.67329 3.19245 3.25020 3.29418 3.73398 3.87507 3.89057 4.00842 4.08450 4.24398 4.26763 4.39548 4.53669 4.70483 4.74621 4.81741 4.87707 4.89648 4.94305 5.04001 5.05766 5.10415 5.12057 5.22856 5.24218 5.28244 5.37312 5.43140 5.50324 5.55563 5.63461 5.69355 5.73805 5.80401 5.82551 5.85768 5.94957 5.97309 6.19310 6.28943 6.31208 7.10388 7.20225 7.53790 7.62948 7.88680 8.04758 8.59810 9.16473 9.52787 10.04254 10.74656 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.033008 B = 0.001722 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.071479 B =16257.977322 C =16565.661031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.051 3.949 13 N -0.665 5.665 14 C 0.088 3.912 15 C -0.138 4.138 16 C 0.108 3.892 17 N -0.609 5.609 18 C 0.523 3.477 19 O -0.540 6.540 20 C -0.115 4.115 21 H 0.100 0.900 22 C -0.115 4.115 23 C -0.146 4.146 24 C 0.083 3.917 25 H 0.094 0.906 26 F -0.207 7.207 27 C -0.135 4.135 28 C 0.111 3.889 29 C -0.123 4.123 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.350 0.650 35 H 0.044 0.956 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.093 0.907 48 H 0.075 0.925 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.092 -28.320 -2.193 28.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.081 4.081 13 N -0.298 5.298 14 C -0.022 4.022 15 C -0.177 4.177 16 C -0.016 4.016 17 N -0.342 5.342 18 C 0.311 3.689 19 O -0.417 6.417 20 C -0.137 4.137 21 H 0.118 0.882 22 C -0.153 4.153 23 C -0.184 4.184 24 C 0.047 3.953 25 H 0.111 0.889 26 F -0.188 7.188 27 C -0.173 4.173 28 C -0.011 4.011 29 C -0.161 4.161 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.170 0.830 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.085 0.915 47 H 0.112 0.888 48 H 0.094 0.906 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.546 -28.254 -0.955 28.276 hybrid contribution -0.524 1.087 -1.070 1.613 sum -1.070 -27.167 -2.025 27.263 Atomic orbital electron populations 1.69604 1.05933 1.28277 1.50496 1.25266 0.95645 0.99737 0.97288 0.85911 0.78757 0.80425 0.79079 1.19927 1.20969 1.19872 1.19655 0.93350 0.82251 1.47735 0.87977 1.41859 1.09189 1.04611 1.64334 1.19809 0.88390 0.84721 0.84533 1.90521 1.13769 1.87060 1.55424 1.21717 0.94352 0.90988 1.01077 1.60068 1.18773 0.99532 1.51392 1.21480 0.95503 0.89298 0.95897 1.22121 0.99559 0.94024 1.01968 1.21820 0.99041 0.97691 0.83026 1.48146 1.53016 1.16295 1.16727 1.20489 0.81307 0.81699 0.85416 1.90676 1.53588 1.75774 1.21698 1.21984 0.97698 0.96318 0.97680 0.88193 1.22139 1.00397 0.92813 0.99957 1.22958 1.03039 0.98048 0.94325 1.22475 0.83828 0.98312 0.90667 0.88856 1.92820 1.51897 1.97607 1.76476 1.22945 1.00222 0.94096 1.00038 1.21774 0.93271 0.87513 0.98586 1.22016 1.01352 0.95590 0.97181 0.91813 0.77471 0.93919 0.89676 0.82955 0.93856 0.90229 0.90407 0.89319 0.90994 0.90858 0.89165 0.90095 0.89451 0.89227 0.89518 0.91514 0.88837 0.90635 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 10 C 0.44 10.30 7.82 -10.98 -0.09 10.21 16 11 O -0.58 -15.78 15.78 5.55 0.09 -15.69 16 12 C 0.05 0.88 5.96 -4.97 -0.03 0.85 16 13 N -0.66 -10.23 5.93 -107.95 -0.64 -10.87 16 14 C 0.09 1.00 2.45 -67.67 -0.17 0.83 16 15 C -0.14 -1.23 5.36 -26.61 -0.14 -1.37 16 16 C 0.11 0.77 6.29 -3.72 -0.02 0.75 16 17 N -0.61 -5.68 2.97 -172.51 -0.51 -6.19 16 18 C 0.52 5.39 6.68 -10.98 -0.07 5.32 16 19 O -0.54 -7.41 14.97 5.55 0.08 -7.32 16 20 C -0.12 -0.88 2.36 -90.66 -0.21 -1.09 16 21 H 0.10 0.67 6.51 -51.93 -0.34 0.34 16 22 C -0.12 -0.89 6.34 -25.61 -0.16 -1.05 16 23 C -0.15 -0.89 6.63 -25.07 -0.17 -1.06 16 24 C 0.08 0.49 4.71 -24.67 -0.12 0.38 16 25 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 26 F -0.21 -1.72 17.22 2.25 0.04 -1.68 16 27 C -0.13 -0.80 5.99 -25.01 -0.15 -0.95 16 28 C 0.11 1.11 6.45 -3.49 -0.02 1.09 16 29 C -0.12 -1.39 5.60 -26.39 -0.15 -1.53 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 32 H 0.04 0.66 8.06 -51.93 -0.42 0.24 16 33 H 0.09 1.36 7.41 -51.93 -0.38 0.98 16 34 H 0.35 5.53 8.03 -39.29 -0.32 5.21 16 35 H 0.04 0.47 7.80 -51.93 -0.40 0.06 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 38 H 0.09 0.49 5.20 -51.93 -0.27 0.22 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.86 6.68 -51.93 -0.35 0.51 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.54 7.85 -51.93 -0.41 0.13 16 45 H 0.09 0.42 7.93 -51.93 -0.41 0.01 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.09 1.05 7.04 -51.93 -0.37 0.69 16 48 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.08 0.90 7.42 -51.93 -0.39 0.52 16 LS Contribution 390.43 15.07 5.88 5.88 Total: -1.00 -33.23 390.43 -8.84 -42.07 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -7.68 Total: 11.42 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -1.74 Total: 4.36 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.49 Total: -55.04 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: 0.17 Total: -23.01 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.23 -8.84 -42.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202192655.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.212 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds