Wall clock time and date at job start Sat Apr 11 2020 06:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 119.99941 * 2 1 4 4 H 1.48506 * 109.47048 * 240.00001 * 3 2 1 5 5 H 1.48503 * 109.47310 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47310 * 120.00103 * 3 2 1 7 7 C 1.38954 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99685 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00379 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00169 * 180.02562 * 9 7 2 11 11 O 1.21286 * 119.99929 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99913 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47084 * 179.97438 * 12 10 9 14 14 C 1.46892 * 111.00108 * 179.97438 * 13 12 10 15 15 C 1.53045 * 109.46192 * 155.00003 * 14 13 12 16 16 C 1.53191 * 109.31363 * 181.37053 * 15 14 13 17 17 N 1.46918 * 108.77663 * 305.36674 * 16 15 14 18 18 C 1.34773 * 120.63045 * 233.58574 * 17 16 15 19 19 O 1.21285 * 120.00335 * 185.20186 * 18 17 16 20 20 C 1.50704 * 120.00059 * 5.19583 * 18 17 16 21 21 H 1.09000 * 110.01245 * 34.72807 * 20 18 17 22 22 C 1.53873 * 110.03160 * 156.11337 * 20 18 17 23 23 C 1.54264 * 106.59604 * 119.33474 * 22 20 18 24 24 C 1.54890 * 104.19861 * 23.61257 * 23 22 20 25 25 H 1.08992 * 110.75832 * 203.55895 * 24 23 22 26 26 F 1.39898 * 110.75717 * 80.36947 * 24 23 22 27 27 C 1.54261 * 110.03137 * 273.33177 * 20 18 17 28 28 C 1.46929 * 118.73957 * 53.85861 * 17 16 15 29 29 C 1.53045 * 109.45146 * 275.06160 * 14 13 12 30 30 H 0.97005 * 120.00043 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99458 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.46737 * 59.99922 * 12 10 9 33 33 H 1.08996 * 109.46881 * 299.99276 * 12 10 9 34 34 H 1.00905 * 111.00011 * 303.95650 * 13 12 10 35 35 H 1.08996 * 109.46011 * 35.02572 * 14 13 12 36 36 H 1.09000 * 109.49621 * 61.41834 * 15 14 13 37 37 H 1.09003 * 109.49358 * 301.32794 * 15 14 13 38 38 H 1.08998 * 109.58637 * 185.57770 * 16 15 14 39 39 H 1.09004 * 109.58127 * 65.15452 * 16 15 14 40 40 H 1.09001 * 110.03228 * 238.61735 * 22 20 18 41 41 H 1.09006 * 110.03280 * 0.05227 * 22 20 18 42 42 H 1.09003 * 110.48369 * 142.29105 * 23 22 20 43 43 H 1.08994 * 110.48837 * 264.92985 * 23 22 20 44 44 H 1.08997 * 110.49117 * 335.73341 * 27 20 18 45 45 H 1.09000 * 110.48358 * 98.37958 * 27 20 18 46 46 H 1.09001 * 109.58562 * 65.93207 * 28 17 16 47 47 H 1.09004 * 109.58707 * 186.35144 * 28 17 16 48 48 H 1.09005 * 109.49320 * 298.57709 * 29 14 13 49 49 H 1.09000 * 109.49679 * 58.63559 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9972 -3.5579 0.0026 11 8 3.2101 -3.5578 0.0022 12 6 1.2436 -4.8630 0.0032 13 7 2.1982 -5.9796 0.0037 14 6 1.4980 -7.2708 0.0049 15 6 2.4043 -8.3430 -0.6044 16 6 1.6583 -9.6807 -0.6329 17 7 1.1876 -9.9886 0.7243 18 6 1.4875 -11.1678 1.3041 19 8 1.0158 -11.4493 2.3854 20 6 2.4091 -12.1365 0.6088 21 1 3.1763 -11.5920 0.0584 22 6 3.0641 -13.0729 1.6392 23 6 2.6349 -14.5071 1.2667 24 6 2.2870 -14.4203 -0.2401 25 1 1.5995 -15.2168 -0.5243 26 9 3.4472 -14.4674 -1.0204 27 6 1.6039 -13.0334 -0.3540 28 6 0.3786 -8.9892 1.4353 29 6 1.1436 -7.6571 1.4428 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3906 0.0024 32 1 0.6174 -4.9212 -0.8870 33 1 0.6168 -4.9201 0.8930 34 1 2.8332 -5.9129 -0.7777 35 1 0.5849 -7.1893 -0.5847 36 1 3.3067 -8.4424 -0.0011 37 1 2.6753 -8.0557 -1.6204 38 1 2.3316 -10.4673 -0.9735 39 1 0.8055 -9.6091 -1.3080 40 1 4.1492 -12.9829 1.5888 41 1 2.7148 -12.8273 2.6421 42 1 3.4562 -15.2053 1.4290 43 1 1.7598 -14.8054 1.8438 44 1 0.5624 -13.0936 -0.0383 45 1 1.6730 -12.6561 -1.3743 46 1 -0.5764 -8.8625 0.9255 47 1 0.2072 -9.3196 2.4598 48 1 2.0578 -7.7629 2.0269 49 1 0.5177 -6.8815 1.8841 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202192655.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:02 Heat of formation + Delta-G solvation = -154.209378 kcal Electronic energy + Delta-G solvation = -29734.185983 eV Core-core repulsion = 25415.650488 eV Total energy + Delta-G solvation = -4318.535495 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.53529 -41.54768 -40.22767 -39.09366 -37.50446 -36.35770 -35.76442 -33.30242 -32.58704 -32.16618 -30.02517 -29.51310 -28.33500 -26.31588 -24.93498 -24.16367 -22.70542 -21.77962 -21.16823 -21.02273 -19.94522 -19.68975 -18.76606 -17.79335 -17.45459 -16.94088 -16.78558 -16.64359 -16.47207 -16.19522 -16.08518 -15.69822 -15.53772 -15.36023 -15.25548 -14.92260 -14.57288 -14.41636 -14.08760 -13.85127 -13.68980 -13.50614 -13.32126 -13.30252 -12.98489 -12.89269 -12.61367 -12.43704 -12.42637 -12.33501 -12.12841 -12.09909 -11.84565 -11.76502 -11.71556 -11.58559 -11.50606 -11.40544 -10.72494 -10.34651 -10.02387 -9.71953 -9.32548 -8.47174 -5.96009 1.39388 1.41460 1.52252 1.53210 1.95740 2.04796 2.28676 2.88680 3.20071 3.21042 3.37599 3.47111 3.48683 3.70321 3.80517 3.91367 4.03908 4.08116 4.19491 4.21799 4.29894 4.33554 4.35799 4.39004 4.43711 4.47353 4.52215 4.60061 4.61241 4.62438 4.70992 4.78021 4.83957 4.84990 4.97933 5.04113 5.12366 5.16906 5.22736 5.32011 5.32607 5.40295 5.52258 5.90913 6.12809 6.37010 6.43810 6.59542 7.11616 7.11933 7.55696 8.11032 8.69860 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.033008 B = 0.001722 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.071479 B =16257.977322 C =16565.661031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.624 6.624 12 C 0.067 3.933 13 N -0.682 5.682 14 C 0.090 3.910 15 C -0.133 4.133 16 C 0.109 3.891 17 N -0.609 5.609 18 C 0.519 3.481 19 O -0.582 6.582 20 C -0.113 4.113 21 H 0.112 0.888 22 C -0.119 4.119 23 C -0.144 4.144 24 C 0.083 3.917 25 H 0.117 0.883 26 F -0.220 7.220 27 C -0.130 4.130 28 C 0.116 3.884 29 C -0.117 4.117 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.347 0.653 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.104 0.896 46 H 0.085 0.915 47 H 0.076 0.924 48 H 0.051 0.949 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.863 -29.342 -3.864 29.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.465 4.465 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.511 6.511 12 C -0.065 4.065 13 N -0.315 5.315 14 C -0.019 4.019 15 C -0.172 4.172 16 C -0.013 4.013 17 N -0.340 5.340 18 C 0.309 3.691 19 O -0.462 6.462 20 C -0.134 4.134 21 H 0.130 0.870 22 C -0.157 4.157 23 C -0.182 4.182 24 C 0.047 3.953 25 H 0.135 0.865 26 F -0.201 7.201 27 C -0.168 4.168 28 C -0.007 4.007 29 C -0.156 4.156 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.167 0.833 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.128 0.872 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.123 0.877 46 H 0.104 0.896 47 H 0.094 0.906 48 H 0.070 0.930 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.339 -29.289 -2.647 29.439 hybrid contribution -0.264 1.376 -0.505 1.489 sum -1.604 -27.913 -3.152 28.137 Atomic orbital electron populations 1.69663 1.06792 1.29370 1.50194 1.26039 0.96566 1.02408 0.96254 0.84992 0.77768 0.76667 0.78929 1.19607 1.19448 1.19873 1.19629 0.92705 0.84083 1.50088 0.90361 1.41933 1.09334 1.04728 1.65025 1.20921 0.88269 0.86218 0.82177 1.90488 1.15919 1.87983 1.56692 1.21559 0.94018 0.88047 1.02899 1.60045 1.19135 1.00639 1.51649 1.21577 0.96386 0.87924 0.96058 1.22089 0.98623 0.94179 1.02288 1.22004 1.00121 0.97155 0.82001 1.48253 1.52518 1.15779 1.17499 1.20982 0.81073 0.82152 0.84937 1.90658 1.55235 1.76747 1.23557 1.22031 0.97549 0.96019 0.97797 0.87048 1.22145 1.00545 0.94142 0.98903 1.22955 1.03385 0.96968 0.94878 1.22615 0.83608 0.99109 0.89996 0.86527 1.92797 1.52828 1.97690 1.76790 1.22958 0.99835 0.93631 1.00346 1.21656 0.93949 0.86817 0.98240 1.21939 1.00323 0.96284 0.97074 0.91279 0.76962 0.91296 0.88281 0.83305 0.92110 0.91761 0.88815 0.87175 0.88796 0.90604 0.91516 0.89571 0.89124 0.89154 0.87740 0.89649 0.90574 0.92986 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.40 13.05 21.66 0.28 -49.12 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 3 Si 0.99 42.86 29.55 68.60 2.03 44.88 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.34 -19.05 9.68 84.04 0.81 -18.24 16 8 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 9 N -0.57 -29.26 5.29 -306.99 -1.62 -30.89 16 10 C 0.44 20.58 7.82 87.66 0.69 21.27 16 11 O -0.62 -34.50 15.78 -3.05 -0.05 -34.55 16 12 C 0.07 2.22 5.96 85.56 0.51 2.73 16 13 N -0.68 -20.28 5.93 -495.43 -2.94 -23.22 16 14 C 0.09 1.86 2.45 44.95 0.11 1.97 16 15 C -0.13 -2.07 5.36 30.67 0.16 -1.91 16 16 C 0.11 1.22 6.29 86.36 0.54 1.77 16 17 N -0.61 -10.37 2.97 -818.08 -2.43 -12.80 16 18 C 0.52 10.30 6.68 87.66 0.59 10.89 16 19 O -0.58 -16.24 14.97 -3.05 -0.05 -16.29 16 20 C -0.11 -1.54 2.36 -10.82 -0.03 -1.57 16 21 H 0.11 1.25 6.51 -2.39 -0.02 1.23 16 22 C -0.12 -1.79 6.34 31.32 0.20 -1.59 16 23 C -0.14 -1.59 6.63 31.67 0.21 -1.38 16 24 C 0.08 0.78 4.71 31.93 0.15 0.94 16 25 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 26 F -0.22 -3.16 17.22 44.97 0.77 -2.38 16 27 C -0.13 -1.20 5.99 31.71 0.19 -1.01 16 28 C 0.12 2.22 6.45 86.50 0.56 2.77 16 29 C -0.12 -2.58 5.60 30.82 0.17 -2.40 16 30 H 0.28 14.00 8.31 -92.70 -0.77 13.23 16 31 H 0.40 19.16 7.90 -92.71 -0.73 18.42 16 32 H 0.07 1.95 8.06 -2.39 -0.02 1.93 16 33 H 0.10 3.02 7.41 -2.39 -0.02 3.01 16 34 H 0.35 10.67 8.03 -89.69 -0.72 9.95 16 35 H 0.06 1.10 7.80 -2.39 -0.02 1.08 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.09 1.21 8.10 -2.39 -0.02 1.19 16 38 H 0.11 0.80 5.20 -2.39 -0.01 0.79 16 39 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.33 6.68 -2.38 -0.02 1.31 16 42 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.09 0.86 7.85 -2.39 -0.02 0.85 16 45 H 0.10 0.62 7.93 -2.39 -0.02 0.60 16 46 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.08 1.74 7.04 -2.38 -0.02 1.72 16 48 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 49 H 0.07 1.64 7.42 -2.39 -0.02 1.62 16 Total: -1.00 -73.70 390.43 0.87 -72.83 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: -0.47 Total: 37.52 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 5.33 Total: 14.01 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -6.71 Total: -116.02 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: -0.09 Total: -50.84 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.77 Total: -2.38 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -73.70 0.87 -72.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202192655.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.381 kcal (2) G-P(sol) polarization free energy of solvation -73.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds