Wall clock time and date at job start Sat Apr 11 2020 06:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86803 * 120.00136 * 2 1 4 4 H 1.48504 * 109.47055 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46868 * 299.99744 * 3 2 1 6 6 H 1.48489 * 109.47258 * 59.99859 * 3 2 1 7 7 C 1.38949 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00495 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99857 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99819 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00300 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99481 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47058 * 180.02562 * 12 10 9 14 14 C 1.46897 * 111.00174 * 180.02562 * 13 12 10 15 15 C 1.53044 * 109.45866 * 275.02251 * 14 13 12 16 16 C 1.53190 * 109.31003 * 178.59850 * 15 14 13 17 17 N 1.46924 * 108.76663 * 54.66097 * 16 15 14 18 18 C 1.34777 * 120.63135 * 126.39791 * 17 16 15 19 19 O 1.21277 * 120.00332 * 355.14819 * 18 17 16 20 20 C 1.50705 * 119.99855 * 175.14557 * 18 17 16 21 21 H 1.09005 * 110.01571 * 37.08342 * 20 18 17 22 22 C 1.54266 * 110.03349 * 275.64142 * 20 18 17 23 23 C 1.54881 * 104.19609 * 217.10502 * 22 20 18 24 24 C 1.54890 * 102.74939 * 37.94336 * 23 22 20 25 25 H 1.08993 * 110.60041 * 80.79087 * 24 23 22 26 26 F 1.39905 * 110.48776 * 203.38076 * 24 23 22 27 27 C 1.53872 * 110.03014 * 158.47305 * 20 18 17 28 28 C 1.46926 * 118.73888 * 306.38266 * 17 16 15 29 29 C 1.53044 * 109.46106 * 154.97129 * 14 13 12 30 30 H 0.97008 * 119.99885 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00067 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47391 * 60.00319 * 12 10 9 33 33 H 1.09001 * 109.47655 * 299.99802 * 12 10 9 34 34 H 1.00895 * 111.00065 * 56.03699 * 13 12 10 35 35 H 1.08999 * 109.45927 * 35.00079 * 14 13 12 36 36 H 1.08997 * 109.49798 * 298.56639 * 15 14 13 37 37 H 1.09001 * 109.49406 * 58.66701 * 15 14 13 38 38 H 1.09000 * 109.60302 * 294.86970 * 16 15 14 39 39 H 1.09002 * 109.70030 * 174.50956 * 16 15 14 40 40 H 1.09001 * 110.48652 * 335.78827 * 22 20 18 41 41 H 1.09004 * 110.48751 * 98.42331 * 22 20 18 42 42 H 1.09003 * 110.76101 * 279.62760 * 23 22 20 43 43 H 1.09000 * 110.75492 * 156.25817 * 23 22 20 44 44 H 1.08999 * 110.03340 * 238.56392 * 27 20 18 45 45 H 1.08992 * 110.03578 * 0.02562 * 27 20 18 46 46 H 1.09005 * 109.58334 * 293.82263 * 28 17 16 47 47 H 1.08993 * 109.59083 * 173.39374 * 28 17 16 48 48 H 1.08999 * 109.49451 * 301.33791 * 29 14 13 49 49 H 1.09002 * 109.49365 * 61.39978 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5578 0.0001 12 6 1.2437 -4.8629 0.0000 13 7 2.1982 -5.9795 0.0007 14 6 1.4979 -7.2708 -0.0005 15 6 1.1422 -7.6592 1.4365 16 6 0.3814 -8.9888 1.4284 17 7 1.1864 -9.9896 0.7148 18 6 1.4856 -11.1695 1.2934 19 8 1.1655 -11.3791 2.4442 20 6 2.2178 -12.2286 0.5101 21 1 2.9585 -11.7652 -0.1418 22 6 1.2179 -13.0532 -0.3266 23 6 1.7745 -14.4974 -0.2687 24 6 2.2984 -14.6037 1.1851 25 1 1.4795 -14.8117 1.8736 26 9 3.2804 -15.5956 1.2803 27 6 2.9048 -13.2144 1.4713 28 6 1.6588 -9.6798 -0.6415 29 6 2.4049 -8.3422 -0.6103 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3906 0.0005 32 1 0.6173 -4.9204 -0.8903 33 1 0.6166 -4.9209 0.8897 34 1 2.8326 -5.9124 0.7824 35 1 0.5854 -7.1885 -0.5909 36 1 2.0558 -7.7661 2.0212 37 1 0.5155 -6.8844 1.8782 38 1 -0.5748 -8.8599 0.9212 39 1 0.2101 -9.3204 2.4525 40 1 0.2229 -13.0096 0.1163 41 1 1.1945 -12.6943 -1.3556 42 1 2.5877 -14.6270 -0.9828 43 1 0.9822 -15.2241 -0.4479 44 1 3.9787 -13.2303 1.2852 45 1 2.7083 -12.9272 2.5041 46 1 0.8067 -9.6071 -1.3174 47 1 2.3323 -10.4660 -0.9824 48 1 2.6770 -8.0536 -1.6255 49 1 3.3067 -8.4421 -0.0063 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202192661.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:06 Heat of formation + Delta-G solvation = -133.007516 kcal Electronic energy + Delta-G solvation = -29590.880349 eV Core-core repulsion = 25273.264236 eV Total energy + Delta-G solvation = -4317.616113 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -47.94675 -40.86520 -38.80296 -37.96526 -36.97866 -35.20782 -33.89415 -31.67729 -31.44414 -31.09685 -29.51906 -28.73993 -26.85310 -24.78451 -23.75569 -23.34527 -21.97598 -21.47597 -20.62227 -19.40914 -18.92921 -18.16313 -17.88155 -16.74032 -16.68221 -16.06078 -16.00934 -15.49496 -15.16998 -15.00225 -14.83926 -14.62690 -14.37062 -14.10373 -13.95109 -13.92687 -13.77334 -13.64413 -13.43028 -12.73823 -12.66443 -12.43582 -12.25612 -12.17698 -11.95290 -11.83994 -11.64813 -11.51393 -11.43136 -11.36570 -11.12248 -11.08742 -11.02607 -10.84175 -10.71401 -10.36134 -10.24676 -9.99620 -9.54470 -8.99084 -8.49847 -8.08250 -7.98321 -6.44204 -3.85019 2.26156 2.62458 3.14675 3.25458 3.32670 3.81013 3.84832 3.87823 3.96690 4.06765 4.20221 4.26292 4.43321 4.57458 4.63241 4.69567 4.77039 4.81315 4.82631 4.94253 4.98584 5.01438 5.09998 5.15318 5.21646 5.23216 5.27160 5.31657 5.37896 5.45903 5.53937 5.59638 5.62302 5.71244 5.75573 5.78249 5.80475 5.93338 5.98530 6.06295 6.24594 6.26531 7.06239 7.18006 7.53176 7.60403 7.83922 8.04099 8.58607 9.15628 9.51735 10.03020 10.73535 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.038414 B = 0.001651 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.730428 B =16957.559316 C =17081.183423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.663 5.663 14 C 0.088 3.912 15 C -0.167 4.167 16 C 0.115 3.885 17 N -0.608 5.608 18 C 0.521 3.479 19 O -0.541 6.541 20 C -0.114 4.114 21 H 0.103 0.897 22 C -0.108 4.108 23 C -0.147 4.147 24 C 0.085 3.915 25 H 0.093 0.907 26 F -0.212 7.212 27 C -0.141 4.141 28 C 0.104 3.896 29 C -0.123 4.123 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.350 0.650 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.801 -27.457 -1.742 27.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.294 5.294 14 C -0.022 4.022 15 C -0.207 4.207 16 C -0.008 4.008 17 N -0.341 5.341 18 C 0.309 3.691 19 O -0.419 6.419 20 C -0.135 4.135 21 H 0.121 0.879 22 C -0.146 4.146 23 C -0.184 4.184 24 C 0.049 3.951 25 H 0.111 0.889 26 F -0.193 7.193 27 C -0.179 4.179 28 C -0.019 4.019 29 C -0.162 4.162 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.170 0.830 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.115 0.885 46 H 0.091 0.909 47 H 0.106 0.894 48 H 0.105 0.895 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.162 -27.372 -1.810 27.456 hybrid contribution -0.562 1.013 0.865 1.446 sum -1.724 -26.359 -0.945 26.432 Atomic orbital electron populations 1.69618 1.05945 1.28069 1.50655 1.25265 0.95641 0.99745 0.97310 0.85797 0.79718 0.81107 0.77711 1.19214 1.20730 1.20764 1.19758 0.93411 0.82227 1.47497 0.87861 1.41874 1.09193 1.04631 1.64342 1.19819 0.88394 0.84736 0.84515 1.90525 1.13776 1.87068 1.55394 1.21706 0.94408 0.90989 1.01097 1.60178 1.18458 0.99527 1.51225 1.21575 0.96745 0.89692 0.94231 1.22718 1.01597 0.97090 0.99256 1.21560 0.93233 0.87332 0.98633 1.48141 1.53086 1.15948 1.16961 1.20488 0.79209 0.82450 0.86904 1.90678 1.54352 1.79424 1.17425 1.21927 0.98622 0.95178 0.97809 0.87888 1.22227 0.98391 0.93789 1.00182 1.23084 1.01880 0.97279 0.96195 1.22472 0.88809 0.85486 0.98344 0.88910 1.92810 1.65081 1.63943 1.97425 1.22724 1.00668 0.92753 1.01800 1.21914 0.99138 0.98042 0.82767 1.21907 0.98632 0.92671 1.02977 0.91916 0.77479 0.89631 0.93884 0.82989 0.90323 0.91155 0.90505 0.91314 0.89021 0.90557 0.89860 0.89702 0.89989 0.89794 0.88493 0.90899 0.89378 0.89453 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 10 C 0.44 10.19 7.82 -10.98 -0.09 10.11 16 11 O -0.58 -15.68 15.78 5.55 0.09 -15.59 16 12 C 0.05 0.85 5.97 -4.97 -0.03 0.82 16 13 N -0.66 -9.96 5.87 -107.94 -0.63 -10.60 16 14 C 0.09 0.95 2.43 -67.67 -0.16 0.79 16 15 C -0.17 -1.70 5.33 -26.61 -0.14 -1.84 16 16 C 0.12 1.08 6.44 -3.71 -0.02 1.05 16 17 N -0.61 -5.28 2.97 -172.77 -0.51 -5.80 16 18 C 0.52 5.09 6.71 -10.98 -0.07 5.02 16 19 O -0.54 -7.26 14.89 5.56 0.08 -7.17 16 20 C -0.11 -0.77 2.48 -90.65 -0.22 -0.99 16 21 H 0.10 0.53 6.19 -51.93 -0.32 0.21 16 22 C -0.11 -0.55 6.35 -25.08 -0.16 -0.71 16 23 C -0.15 -0.75 6.70 -24.74 -0.17 -0.92 16 24 C 0.09 0.61 4.66 -25.07 -0.12 0.49 16 25 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 26 F -0.21 -1.97 17.17 2.25 0.04 -1.93 16 27 C -0.14 -1.08 6.15 -25.61 -0.16 -1.23 16 28 C 0.10 0.69 6.32 -3.71 -0.02 0.67 16 29 C -0.12 -1.10 5.69 -26.61 -0.15 -1.25 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 32 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 33 H 0.04 0.65 7.41 -51.93 -0.38 0.27 16 34 H 0.35 5.63 8.18 -39.29 -0.32 5.31 16 35 H 0.08 0.81 7.80 -51.93 -0.40 0.41 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.80 7.42 -51.93 -0.39 0.41 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.99 7.00 -51.93 -0.36 0.62 16 40 H 0.08 0.45 7.85 -51.93 -0.41 0.04 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 45 H 0.10 0.93 6.63 -51.93 -0.34 0.58 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 0.41 5.42 -51.93 -0.28 0.13 16 48 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 390.82 15.07 5.89 5.89 Total: -1.00 -33.08 390.82 -8.86 -41.94 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -7.69 Total: 11.08 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -1.76 Total: 4.05 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.48 Total: -54.16 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: 0.17 Total: -22.76 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.08 -8.86 -41.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202192661.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.068 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds