Wall clock time and date at job start Sat Apr 11 2020 06:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86803 * 120.00136 * 2 1 4 4 H 1.48504 * 109.47055 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46868 * 299.99744 * 3 2 1 6 6 H 1.48489 * 109.47258 * 59.99859 * 3 2 1 7 7 C 1.38949 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00495 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99857 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99819 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00300 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99481 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47058 * 180.02562 * 12 10 9 14 14 C 1.46897 * 111.00174 * 180.02562 * 13 12 10 15 15 C 1.53044 * 109.45866 * 275.02251 * 14 13 12 16 16 C 1.53190 * 109.31003 * 178.59850 * 15 14 13 17 17 N 1.46924 * 108.76663 * 54.66097 * 16 15 14 18 18 C 1.34777 * 120.63135 * 126.39791 * 17 16 15 19 19 O 1.21277 * 120.00332 * 355.14819 * 18 17 16 20 20 C 1.50705 * 119.99855 * 175.14557 * 18 17 16 21 21 H 1.09005 * 110.01571 * 37.08342 * 20 18 17 22 22 C 1.54266 * 110.03349 * 275.64142 * 20 18 17 23 23 C 1.54881 * 104.19609 * 217.10502 * 22 20 18 24 24 C 1.54890 * 102.74939 * 37.94336 * 23 22 20 25 25 H 1.08993 * 110.60041 * 80.79087 * 24 23 22 26 26 F 1.39905 * 110.48776 * 203.38076 * 24 23 22 27 27 C 1.53872 * 110.03014 * 158.47305 * 20 18 17 28 28 C 1.46926 * 118.73888 * 306.38266 * 17 16 15 29 29 C 1.53044 * 109.46106 * 154.97129 * 14 13 12 30 30 H 0.97008 * 119.99885 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00067 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47391 * 60.00319 * 12 10 9 33 33 H 1.09001 * 109.47655 * 299.99802 * 12 10 9 34 34 H 1.00895 * 111.00065 * 56.03699 * 13 12 10 35 35 H 1.08999 * 109.45927 * 35.00079 * 14 13 12 36 36 H 1.08997 * 109.49798 * 298.56639 * 15 14 13 37 37 H 1.09001 * 109.49406 * 58.66701 * 15 14 13 38 38 H 1.09000 * 109.60302 * 294.86970 * 16 15 14 39 39 H 1.09002 * 109.70030 * 174.50956 * 16 15 14 40 40 H 1.09001 * 110.48652 * 335.78827 * 22 20 18 41 41 H 1.09004 * 110.48751 * 98.42331 * 22 20 18 42 42 H 1.09003 * 110.76101 * 279.62760 * 23 22 20 43 43 H 1.09000 * 110.75492 * 156.25817 * 23 22 20 44 44 H 1.08999 * 110.03340 * 238.56392 * 27 20 18 45 45 H 1.08992 * 110.03578 * 0.02562 * 27 20 18 46 46 H 1.09005 * 109.58334 * 293.82263 * 28 17 16 47 47 H 1.08993 * 109.59083 * 173.39374 * 28 17 16 48 48 H 1.08999 * 109.49451 * 301.33791 * 29 14 13 49 49 H 1.09002 * 109.49365 * 61.39978 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5578 0.0001 12 6 1.2437 -4.8629 0.0000 13 7 2.1982 -5.9795 0.0007 14 6 1.4979 -7.2708 -0.0005 15 6 1.1422 -7.6592 1.4365 16 6 0.3814 -8.9888 1.4284 17 7 1.1864 -9.9896 0.7148 18 6 1.4856 -11.1695 1.2934 19 8 1.1655 -11.3791 2.4442 20 6 2.2178 -12.2286 0.5101 21 1 2.9585 -11.7652 -0.1418 22 6 1.2179 -13.0532 -0.3266 23 6 1.7745 -14.4974 -0.2687 24 6 2.2984 -14.6037 1.1851 25 1 1.4795 -14.8117 1.8736 26 9 3.2804 -15.5956 1.2803 27 6 2.9048 -13.2144 1.4713 28 6 1.6588 -9.6798 -0.6415 29 6 2.4049 -8.3422 -0.6103 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3906 0.0005 32 1 0.6173 -4.9204 -0.8903 33 1 0.6166 -4.9209 0.8897 34 1 2.8326 -5.9124 0.7824 35 1 0.5854 -7.1885 -0.5909 36 1 2.0558 -7.7661 2.0212 37 1 0.5155 -6.8844 1.8782 38 1 -0.5748 -8.8599 0.9212 39 1 0.2101 -9.3204 2.4525 40 1 0.2229 -13.0096 0.1163 41 1 1.1945 -12.6943 -1.3556 42 1 2.5877 -14.6270 -0.9828 43 1 0.9822 -15.2241 -0.4479 44 1 3.9787 -13.2303 1.2852 45 1 2.7083 -12.9272 2.5041 46 1 0.8067 -9.6071 -1.3174 47 1 2.3323 -10.4660 -0.9824 48 1 2.6770 -8.0536 -1.6255 49 1 3.3067 -8.4421 -0.0063 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202192661.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:05 Heat of formation + Delta-G solvation = -155.905731 kcal Electronic energy + Delta-G solvation = -29591.873291 eV Core-core repulsion = 25273.264236 eV Total energy + Delta-G solvation = -4318.609054 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.59180 -41.58145 -40.23770 -39.14656 -37.64974 -36.35965 -35.76949 -33.30059 -32.49141 -32.16164 -30.05300 -29.33309 -28.25688 -26.29281 -24.68009 -24.28340 -22.67878 -21.95980 -21.46596 -21.01982 -19.96466 -19.64387 -18.82509 -17.77353 -17.32724 -17.23573 -16.78956 -16.72434 -16.39405 -16.10124 -15.93911 -15.65128 -15.45784 -15.29152 -15.19198 -14.77409 -14.59276 -14.43830 -14.24292 -13.98718 -13.64650 -13.50430 -13.40829 -13.16000 -12.98595 -12.87352 -12.76139 -12.53544 -12.40751 -12.35971 -12.20127 -12.12028 -11.90853 -11.75120 -11.61117 -11.57883 -11.51287 -11.41011 -10.73915 -10.34544 -10.01899 -9.72613 -9.27672 -8.47463 -5.96056 1.36219 1.41760 1.54290 1.55733 1.95763 2.05074 2.28751 2.90483 3.19995 3.27467 3.35485 3.46610 3.54835 3.64295 3.76614 3.89406 4.02367 4.09989 4.16434 4.20039 4.25616 4.32130 4.34580 4.36824 4.44691 4.46970 4.52237 4.60144 4.61757 4.72580 4.76875 4.81579 4.87065 4.90810 4.97654 5.04622 5.11033 5.15059 5.21335 5.30846 5.31238 5.40831 5.54978 5.91530 6.13421 6.35574 6.40238 6.59761 7.12225 7.12397 7.56102 8.11533 8.70014 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.038414 B = 0.001651 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.730428 B =16957.559316 C =17081.183423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.334 4.334 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.625 6.625 12 C 0.066 3.934 13 N -0.675 5.675 14 C 0.090 3.910 15 C -0.158 4.158 16 C 0.118 3.882 17 N -0.607 5.607 18 C 0.516 3.484 19 O -0.587 6.587 20 C -0.108 4.108 21 H 0.126 0.874 22 C -0.101 4.101 23 C -0.139 4.139 24 C 0.077 3.923 25 H 0.090 0.910 26 F -0.226 7.226 27 C -0.143 4.143 28 C 0.107 3.893 29 C -0.119 4.119 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.341 0.659 35 H 0.094 0.906 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.096 0.904 47 H 0.114 0.886 48 H 0.090 0.910 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.676 -28.241 -3.688 28.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.224 3.776 11 O -0.511 6.511 12 C -0.066 4.066 13 N -0.306 5.306 14 C -0.020 4.020 15 C -0.198 4.198 16 C -0.005 4.005 17 N -0.338 5.338 18 C 0.306 3.694 19 O -0.467 6.467 20 C -0.129 4.129 21 H 0.144 0.856 22 C -0.139 4.139 23 C -0.176 4.176 24 C 0.041 3.959 25 H 0.108 0.892 26 F -0.206 7.206 27 C -0.181 4.181 28 C -0.015 4.015 29 C -0.158 4.158 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.125 0.875 33 H 0.082 0.918 34 H 0.159 0.841 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.129 0.871 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.114 0.886 47 H 0.132 0.868 48 H 0.109 0.891 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.067 -28.169 -3.784 28.497 hybrid contribution -0.271 1.225 1.512 1.965 sum -2.338 -26.943 -2.272 27.140 Atomic orbital electron populations 1.69671 1.06780 1.29224 1.50362 1.26023 0.96550 1.02372 0.96290 0.84879 0.78009 0.77162 0.78334 1.19886 1.19535 1.19654 1.19698 0.92686 0.84103 1.49888 0.90413 1.41942 1.09339 1.04727 1.65057 1.20958 0.88271 0.86270 0.82109 1.90493 1.15978 1.88003 1.56673 1.21569 0.94053 0.87976 1.03034 1.60231 1.18626 1.00725 1.50991 1.21708 0.97425 0.88087 0.94765 1.22601 1.00876 0.97616 0.98706 1.21485 0.94037 0.86812 0.98206 1.48241 1.52500 1.15420 1.17680 1.21045 0.78732 0.83112 0.86519 1.90663 1.56215 1.80341 1.19524 1.21977 0.99158 0.94235 0.97551 0.85611 1.22252 0.97233 0.93281 1.01157 1.23066 1.02429 0.97674 0.94449 1.22636 0.88351 0.84718 1.00173 0.89175 1.92780 1.65731 1.64533 1.97603 1.22687 1.01179 0.93498 1.00711 1.22092 1.00278 0.97300 0.81788 1.21875 0.98033 0.93305 1.02587 0.91300 0.76941 0.87451 0.91795 0.84079 0.88826 0.92859 0.90770 0.89399 0.90925 0.91412 0.87080 0.88745 0.88838 0.89343 0.91118 0.88604 0.86797 0.89113 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.13 13.05 21.66 0.28 -48.85 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 3 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 7 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 8 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 9 N -0.57 -29.05 5.29 -306.98 -1.62 -30.67 16 10 C 0.44 20.37 7.82 87.66 0.69 21.05 16 11 O -0.62 -34.38 15.78 -3.05 -0.05 -34.43 16 12 C 0.07 2.12 5.97 85.56 0.51 2.64 16 13 N -0.68 -19.60 5.87 -495.41 -2.91 -22.51 16 14 C 0.09 1.75 2.43 44.95 0.11 1.86 16 15 C -0.16 -3.06 5.33 30.67 0.16 -2.90 16 16 C 0.12 2.05 6.44 86.36 0.56 2.61 16 17 N -0.61 -9.33 2.97 -818.91 -2.43 -11.76 16 18 C 0.52 9.55 6.71 87.66 0.59 10.14 16 19 O -0.59 -16.11 14.89 -3.02 -0.04 -16.15 16 20 C -0.11 -1.23 2.48 -10.81 -0.03 -1.26 16 21 H 0.13 0.85 6.19 -2.38 -0.01 0.84 16 22 C -0.10 -0.72 6.35 31.67 0.20 -0.52 16 23 C -0.14 -1.07 6.70 31.88 0.21 -0.85 16 24 C 0.08 1.04 4.66 31.67 0.15 1.19 16 25 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 26 F -0.23 -4.08 17.17 44.97 0.77 -3.31 16 27 C -0.14 -2.11 6.15 31.32 0.19 -1.91 16 28 C 0.11 1.03 6.32 86.36 0.55 1.58 16 29 C -0.12 -1.84 5.69 30.67 0.17 -1.66 16 30 H 0.28 13.84 8.31 -92.70 -0.77 13.07 16 31 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 32 H 0.11 3.04 8.05 -2.39 -0.02 3.02 16 33 H 0.06 1.82 7.41 -2.39 -0.02 1.80 16 34 H 0.34 11.00 8.18 -89.70 -0.73 10.26 16 35 H 0.09 1.60 7.80 -2.39 -0.02 1.58 16 36 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.47 7.42 -2.39 -0.02 1.45 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.58 7.00 -2.39 -0.02 1.56 16 40 H 0.07 0.64 7.85 -2.39 -0.02 0.62 16 41 H 0.11 0.22 8.14 -2.38 -0.02 0.20 16 42 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.09 1.19 8.11 -2.39 -0.02 1.17 16 45 H 0.07 1.43 6.63 -2.39 -0.02 1.42 16 46 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 47 H 0.11 0.55 5.42 -2.39 -0.01 0.53 16 48 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -74.21 390.82 0.88 -73.33 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: -0.48 Total: 35.93 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 5.34 Total: 13.67 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -6.68 Total: -113.79 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: -0.09 Total: -50.58 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.77 Total: -3.31 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -74.21 0.88 -73.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202192661.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.580 kcal (2) G-P(sol) polarization free energy of solvation -74.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds