Wall clock time and date at job start Sat Apr 11 2020 06:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00270 * 2 1 4 4 H 1.48497 * 109.47211 * 240.00125 * 3 2 1 5 5 H 1.48498 * 109.47155 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46809 * 120.00382 * 3 2 1 7 7 C 1.38953 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00017 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00127 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00222 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00031 * 359.97438 * 10 9 7 12 12 C 1.50707 * 120.00169 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.46978 * 180.02562 * 12 10 9 14 14 C 1.46895 * 110.99775 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.52571 * 34.92055 * 14 13 12 16 16 C 1.53041 * 109.49941 * 274.83349 * 14 13 12 17 17 C 1.53044 * 109.53926 * 178.68277 * 16 14 13 18 18 C 1.53185 * 109.31049 * 61.37048 * 17 16 14 19 19 N 1.46926 * 108.77688 * 305.36170 * 18 17 16 20 20 C 1.34775 * 120.63586 * 233.88640 * 19 18 17 21 21 O 1.21284 * 120.00635 * 174.87399 * 20 19 18 22 22 C 1.50703 * 119.99727 * 354.87276 * 20 19 18 23 23 C 1.53009 * 115.55037 * 281.22481 * 22 20 19 24 24 C 1.53000 * 109.46797 * 302.19766 * 23 22 20 25 25 F 1.39901 * 109.46859 * 175.65507 * 24 23 22 26 26 C 1.52995 * 117.50282 * 135.51490 * 22 20 19 27 27 C 1.53002 * 60.00146 * 252.51227 * 26 22 20 28 28 C 1.46928 * 118.73751 * 53.60999 * 19 18 17 29 29 H 0.97002 * 119.99301 * 359.97438 * 1 2 3 30 30 H 0.97006 * 120.00183 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47153 * 60.00211 * 12 10 9 32 32 H 1.09003 * 109.46912 * 299.99805 * 12 10 9 33 33 H 1.00900 * 111.00064 * 303.95126 * 13 12 10 34 34 H 1.09000 * 109.45957 * 298.70861 * 16 14 13 35 35 H 1.08997 * 109.45381 * 58.66553 * 16 14 13 36 36 H 1.09001 * 109.49632 * 181.31752 * 17 16 14 37 37 H 1.08999 * 109.49941 * 301.38536 * 17 16 14 38 38 H 1.09000 * 109.58993 * 185.57542 * 18 17 16 39 39 H 1.08999 * 109.59100 * 65.14878 * 18 17 16 40 40 H 1.08998 * 109.47201 * 62.19654 * 23 22 20 41 41 H 1.08997 * 109.46822 * 182.19903 * 23 22 20 42 42 H 1.09003 * 109.46808 * 295.65111 * 24 23 22 43 43 H 1.09001 * 109.47278 * 55.65214 * 24 23 22 44 44 H 1.09008 * 117.49895 * 0.02562 * 26 22 20 45 45 H 1.08997 * 117.50601 * 145.02096 * 26 22 20 46 46 H 1.08995 * 117.49227 * 252.50997 * 27 26 22 47 47 H 1.08994 * 117.51900 * 107.48075 * 27 26 22 48 48 H 1.08999 * 109.58928 * 66.18118 * 28 19 18 49 49 H 1.08996 * 109.58737 * 186.46140 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2833 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3906 -0.0016 10 6 1.9971 -3.5579 -0.0026 11 8 3.2100 -3.5580 -0.0031 12 6 1.2435 -4.8630 -0.0032 13 7 2.1980 -5.9796 -0.0037 14 6 1.4977 -7.2708 -0.0049 15 1 0.5838 -7.1890 -0.5932 16 6 1.1468 -7.6630 1.4322 17 6 0.3882 -8.9921 1.4293 18 6 1.2824 -10.0846 0.8348 19 7 1.7425 -9.6496 -0.4910 20 6 1.5558 -10.4309 -1.5732 21 8 1.8553 -10.0223 -2.6752 22 6 0.9749 -11.8123 -1.4140 23 6 1.9501 -12.8864 -0.9279 24 6 3.1315 -12.9781 -1.8958 25 9 4.0708 -13.8887 -1.4000 26 6 -0.1123 -12.2397 -2.4020 27 6 -0.4799 -11.9179 -0.9521 28 6 2.4046 -8.3438 -0.6157 29 1 -0.4849 0.8401 0.0004 30 1 0.3533 -2.3906 -0.0016 31 1 0.6165 -4.9201 -0.8930 32 1 0.6172 -4.9213 0.8870 33 1 2.8329 -5.9122 -0.7851 34 1 2.0627 -7.7687 2.0136 35 1 0.5216 -6.8890 1.8773 36 1 0.1182 -9.2591 2.4511 37 1 -0.5156 -8.8939 0.8280 38 1 0.7144 -11.0099 0.7390 39 1 2.1423 -10.2469 1.4848 40 1 2.3139 -12.6240 0.0656 41 1 1.4395 -13.8484 -0.8856 42 1 2.7776 -13.3154 -2.8700 43 1 3.5951 -11.9969 -1.9973 44 1 -0.4071 -11.5218 -3.1675 45 1 -0.1329 -13.2862 -2.7061 46 1 -0.7423 -12.7528 -0.3024 47 1 -1.0167 -10.9883 -0.7631 48 1 3.3559 -8.3642 -0.0840 49 1 2.5791 -8.1217 -1.6684 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208705154.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:26 Heat of formation + Delta-G solvation = -102.020881 kcal Electronic energy + Delta-G solvation = -30051.156974 eV Core-core repulsion = 25734.884542 eV Total energy + Delta-G solvation = -4316.272432 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -47.94760 -40.99734 -38.74978 -37.95060 -37.11044 -35.12203 -33.85227 -32.44298 -31.73848 -31.25460 -30.19435 -26.41314 -26.28537 -24.55198 -23.94946 -23.09049 -22.72387 -22.45237 -20.30590 -19.30124 -18.83068 -17.89541 -17.33154 -16.71344 -16.59882 -16.25242 -16.13897 -15.42849 -15.35486 -15.15955 -15.08183 -14.69991 -14.49150 -14.30990 -14.00052 -13.92235 -13.78577 -13.35148 -13.25491 -13.07545 -12.79990 -12.46344 -12.28359 -12.08354 -11.97122 -11.89008 -11.53519 -11.47175 -11.25870 -11.19089 -11.07887 -10.95936 -10.86629 -10.80013 -10.54578 -10.44334 -10.21643 -9.95333 -9.50301 -8.94050 -8.47429 -8.12152 -7.96610 -6.41919 -3.82745 2.22292 2.52425 3.07416 3.20257 3.25829 3.30419 3.83429 3.90037 3.99456 4.06864 4.18223 4.25090 4.27857 4.49603 4.55796 4.64664 4.68478 4.71863 4.76522 4.86034 4.94086 5.04354 5.09481 5.14875 5.22322 5.24571 5.28293 5.32479 5.38404 5.41987 5.50451 5.57126 5.59801 5.63871 5.69058 5.76345 5.83997 5.94335 6.01970 6.12376 6.21320 6.30512 7.05861 7.17926 7.54909 7.59456 7.83775 8.05665 8.60798 9.17462 9.53700 10.05144 10.75747 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.023535 B = 0.001935 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.409064 B =14466.741569 C =14745.849051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.661 5.661 14 C 0.076 3.924 15 H 0.045 0.955 16 C -0.110 4.110 17 C -0.134 4.134 18 C 0.102 3.898 19 N -0.601 5.601 20 C 0.549 3.451 21 O -0.533 6.533 22 C -0.159 4.159 23 C -0.105 4.105 24 C 0.062 3.938 25 F -0.218 7.218 26 C -0.142 4.142 27 C -0.159 4.159 28 C 0.109 3.891 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.351 0.649 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.103 0.897 48 H 0.081 0.919 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.413 -28.143 0.827 28.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.294 5.294 14 C -0.035 4.035 15 H 0.063 0.937 16 C -0.149 4.149 17 C -0.173 4.173 18 C -0.021 4.021 19 N -0.334 5.334 20 C 0.337 3.663 21 O -0.410 6.410 22 C -0.162 4.162 23 C -0.143 4.143 24 C 0.007 3.993 25 F -0.199 7.199 26 C -0.180 4.180 27 C -0.196 4.196 28 C -0.014 4.014 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.171 0.829 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.126 0.874 47 H 0.121 0.879 48 H 0.099 0.901 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.440 -27.742 0.917 27.970 hybrid contribution -0.616 0.935 -0.744 1.345 sum -4.056 -26.807 0.173 27.113 Atomic orbital electron populations 1.69608 1.05937 1.28262 1.50541 1.25271 0.95651 0.99745 0.97307 0.85907 0.78753 0.80407 0.79093 1.19900 1.20986 1.19870 1.19655 0.93351 0.82226 1.47679 0.87956 1.41854 1.09191 1.04600 1.64352 1.19781 0.88383 0.84679 0.84546 1.90526 1.13722 1.87044 1.55387 1.21713 0.94296 0.90861 1.01158 1.60109 1.18697 0.99311 1.51264 1.21821 0.95827 0.89369 0.96483 0.93694 1.21560 1.00900 0.95972 0.96426 1.21940 0.98621 0.95330 1.01417 1.21925 0.98692 0.98234 0.83234 1.47999 1.58732 1.18670 1.08014 1.19496 0.77852 0.85137 0.83865 1.90730 1.51109 1.74066 1.25064 1.21270 0.91902 0.94144 1.08913 1.21626 0.95093 0.97704 0.99877 1.21949 0.87504 0.92302 0.97578 1.92770 1.67516 1.69889 1.89761 1.23088 0.98712 1.03039 0.93112 1.23178 0.93829 1.04212 0.98382 1.21791 0.95565 0.81147 1.02904 0.91824 0.77473 0.93850 0.89609 0.82867 0.90770 0.91279 0.90237 0.91637 0.89116 0.91001 0.89774 0.89468 0.90248 0.90647 0.87746 0.87583 0.87411 0.87907 0.90084 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.36 5.29 -10.96 -0.06 -14.42 16 10 C 0.44 10.45 7.82 -10.98 -0.09 10.36 16 11 O -0.58 -15.88 15.78 5.55 0.09 -15.79 16 12 C 0.05 0.92 5.97 -4.97 -0.03 0.90 16 13 N -0.66 -10.51 5.94 -107.86 -0.64 -11.16 16 14 C 0.08 0.93 2.64 -67.59 -0.18 0.75 16 15 H 0.05 0.58 7.80 -51.93 -0.41 0.18 16 16 C -0.11 -1.15 5.40 -26.69 -0.14 -1.29 16 17 C -0.13 -0.98 6.08 -26.61 -0.16 -1.15 16 18 C 0.10 0.70 5.98 -3.71 -0.02 0.68 16 19 N -0.60 -5.83 2.97 -172.77 -0.51 -6.34 16 20 C 0.55 5.85 5.85 -10.98 -0.06 5.79 16 21 O -0.53 -7.77 16.40 5.55 0.09 -7.68 16 22 C -0.16 -1.12 0.85 -155.66 -0.13 -1.26 16 23 C -0.11 -0.63 5.52 -26.73 -0.15 -0.78 16 24 C 0.06 0.49 7.42 37.16 0.28 0.76 16 25 F -0.22 -2.15 17.36 2.25 0.04 -2.11 16 26 C -0.14 -0.88 9.84 -26.73 -0.26 -1.14 16 27 C -0.16 -0.80 8.01 -26.73 -0.21 -1.02 16 28 C 0.11 1.25 5.71 -3.71 -0.02 1.23 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 30 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 31 H 0.04 0.71 8.06 -51.93 -0.42 0.29 16 32 H 0.09 1.39 7.43 -51.93 -0.39 1.00 16 33 H 0.35 5.87 8.06 -39.29 -0.32 5.55 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.78 7.44 -51.93 -0.39 0.39 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.46 4.76 -51.93 -0.25 0.22 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.48 7.81 -51.93 -0.41 0.07 16 41 H 0.09 0.39 8.11 -51.93 -0.42 -0.04 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.70 7.35 -51.93 -0.38 0.32 16 44 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 45 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.09 1.22 6.99 -51.93 -0.36 0.85 16 LS Contribution 398.51 15.07 6.01 6.01 Total: -1.00 -33.37 398.51 -8.51 -41.88 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -7.79 Total: 11.58 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -1.43 Total: 5.78 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.49 Total: -55.81 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: 0.18 Total: -23.47 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.37 -8.51 -41.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208705154.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.139 kcal (2) G-P(sol) polarization free energy of solvation -33.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds