Wall clock time and date at job start Sat Apr 11 2020 06:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00270 * 2 1 4 4 H 1.48497 * 109.47211 * 240.00125 * 3 2 1 5 5 H 1.48498 * 109.47155 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46809 * 120.00382 * 3 2 1 7 7 C 1.38953 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00017 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00127 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00222 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00031 * 359.97438 * 10 9 7 12 12 C 1.50707 * 120.00169 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.46978 * 180.02562 * 12 10 9 14 14 C 1.46895 * 110.99775 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.52571 * 34.92055 * 14 13 12 16 16 C 1.53041 * 109.49941 * 274.83349 * 14 13 12 17 17 C 1.53044 * 109.53926 * 178.68277 * 16 14 13 18 18 C 1.53185 * 109.31049 * 61.37048 * 17 16 14 19 19 N 1.46926 * 108.77688 * 305.36170 * 18 17 16 20 20 C 1.34775 * 120.63586 * 233.88640 * 19 18 17 21 21 O 1.21284 * 120.00635 * 174.87399 * 20 19 18 22 22 C 1.50703 * 119.99727 * 354.87276 * 20 19 18 23 23 C 1.53009 * 115.55037 * 281.22481 * 22 20 19 24 24 C 1.53000 * 109.46797 * 302.19766 * 23 22 20 25 25 F 1.39901 * 109.46859 * 175.65507 * 24 23 22 26 26 C 1.52995 * 117.50282 * 135.51490 * 22 20 19 27 27 C 1.53002 * 60.00146 * 252.51227 * 26 22 20 28 28 C 1.46928 * 118.73751 * 53.60999 * 19 18 17 29 29 H 0.97002 * 119.99301 * 359.97438 * 1 2 3 30 30 H 0.97006 * 120.00183 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47153 * 60.00211 * 12 10 9 32 32 H 1.09003 * 109.46912 * 299.99805 * 12 10 9 33 33 H 1.00900 * 111.00064 * 303.95126 * 13 12 10 34 34 H 1.09000 * 109.45957 * 298.70861 * 16 14 13 35 35 H 1.08997 * 109.45381 * 58.66553 * 16 14 13 36 36 H 1.09001 * 109.49632 * 181.31752 * 17 16 14 37 37 H 1.08999 * 109.49941 * 301.38536 * 17 16 14 38 38 H 1.09000 * 109.58993 * 185.57542 * 18 17 16 39 39 H 1.08999 * 109.59100 * 65.14878 * 18 17 16 40 40 H 1.08998 * 109.47201 * 62.19654 * 23 22 20 41 41 H 1.08997 * 109.46822 * 182.19903 * 23 22 20 42 42 H 1.09003 * 109.46808 * 295.65111 * 24 23 22 43 43 H 1.09001 * 109.47278 * 55.65214 * 24 23 22 44 44 H 1.09008 * 117.49895 * 0.02562 * 26 22 20 45 45 H 1.08997 * 117.50601 * 145.02096 * 26 22 20 46 46 H 1.08995 * 117.49227 * 252.50997 * 27 26 22 47 47 H 1.08994 * 117.51900 * 107.48075 * 27 26 22 48 48 H 1.08999 * 109.58928 * 66.18118 * 28 19 18 49 49 H 1.08996 * 109.58737 * 186.46140 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2833 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3906 -0.0016 10 6 1.9971 -3.5579 -0.0026 11 8 3.2100 -3.5580 -0.0031 12 6 1.2435 -4.8630 -0.0032 13 7 2.1980 -5.9796 -0.0037 14 6 1.4977 -7.2708 -0.0049 15 1 0.5838 -7.1890 -0.5932 16 6 1.1468 -7.6630 1.4322 17 6 0.3882 -8.9921 1.4293 18 6 1.2824 -10.0846 0.8348 19 7 1.7425 -9.6496 -0.4910 20 6 1.5558 -10.4309 -1.5732 21 8 1.8553 -10.0223 -2.6752 22 6 0.9749 -11.8123 -1.4140 23 6 1.9501 -12.8864 -0.9279 24 6 3.1315 -12.9781 -1.8958 25 9 4.0708 -13.8887 -1.4000 26 6 -0.1123 -12.2397 -2.4020 27 6 -0.4799 -11.9179 -0.9521 28 6 2.4046 -8.3438 -0.6157 29 1 -0.4849 0.8401 0.0004 30 1 0.3533 -2.3906 -0.0016 31 1 0.6165 -4.9201 -0.8930 32 1 0.6172 -4.9213 0.8870 33 1 2.8329 -5.9122 -0.7851 34 1 2.0627 -7.7687 2.0136 35 1 0.5216 -6.8890 1.8773 36 1 0.1182 -9.2591 2.4511 37 1 -0.5156 -8.8939 0.8280 38 1 0.7144 -11.0099 0.7390 39 1 2.1423 -10.2469 1.4848 40 1 2.3139 -12.6240 0.0656 41 1 1.4395 -13.8484 -0.8856 42 1 2.7776 -13.3154 -2.8700 43 1 3.5951 -11.9969 -1.9973 44 1 -0.4071 -11.5218 -3.1675 45 1 -0.1329 -13.2862 -2.7061 46 1 -0.7423 -12.7528 -0.3024 47 1 -1.0167 -10.9883 -0.7631 48 1 3.3559 -8.3642 -0.0840 49 1 2.5791 -8.1217 -1.6684 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208705154.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:25 Heat of formation + Delta-G solvation = -125.381351 kcal Electronic energy + Delta-G solvation = -30052.169960 eV Core-core repulsion = 25734.884542 eV Total energy + Delta-G solvation = -4317.285418 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.64920 -41.74880 -40.26723 -39.14498 -37.86330 -36.39500 -35.76522 -33.34541 -33.21677 -32.24441 -31.31969 -28.01587 -27.06028 -25.96576 -24.89375 -23.69181 -23.33668 -23.23509 -21.22728 -21.08524 -19.95449 -19.54244 -18.14535 -17.77187 -17.44805 -17.27244 -16.94974 -16.80482 -16.48698 -16.20083 -16.06937 -15.86459 -15.60869 -15.43124 -15.26474 -14.99957 -14.81761 -14.54277 -14.10958 -13.85649 -13.75724 -13.60344 -13.47180 -13.36598 -13.22377 -12.90635 -12.61626 -12.45549 -12.42334 -12.39500 -12.13765 -11.87853 -11.86950 -11.85759 -11.66240 -11.52484 -11.50229 -11.06164 -10.69269 -10.38819 -10.04604 -9.78284 -9.43933 -8.48689 -5.97758 1.38528 1.40512 1.43914 1.51636 1.76968 2.01463 2.27869 2.58363 2.88175 3.18028 3.28384 3.39493 3.47102 3.70902 3.71253 3.77523 3.88798 3.93144 4.05696 4.07710 4.11111 4.16886 4.22590 4.27106 4.40539 4.47284 4.48382 4.51743 4.63990 4.72649 4.73821 4.78573 4.83931 4.88750 4.95608 5.00286 5.03227 5.10105 5.18218 5.20659 5.33250 5.38950 5.44736 5.84315 6.04504 6.26575 6.32560 6.57002 7.03986 7.09725 7.52529 8.07714 8.68455 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.023535 B = 0.001935 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.409064 B =14466.741569 C =14745.849051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.572 5.572 10 C 0.437 3.563 11 O -0.622 6.622 12 C 0.069 3.931 13 N -0.671 5.671 14 C 0.082 3.918 15 H 0.041 0.959 16 C -0.109 4.109 17 C -0.126 4.126 18 C 0.098 3.902 19 N -0.599 5.599 20 C 0.543 3.457 21 O -0.584 6.584 22 C -0.168 4.168 23 C -0.096 4.096 24 C 0.058 3.942 25 F -0.229 7.229 26 C -0.149 4.149 27 C -0.136 4.136 28 C 0.114 3.886 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.343 0.657 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.117 0.883 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.128 0.872 46 H 0.140 0.860 47 H 0.099 0.901 48 H 0.080 0.920 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.165 -30.072 2.332 30.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.097 0.903 9 N -0.209 5.209 10 C 0.225 3.775 11 O -0.509 6.509 12 C -0.064 4.064 13 N -0.304 5.304 14 C -0.028 4.028 15 H 0.059 0.941 16 C -0.147 4.147 17 C -0.164 4.164 18 C -0.023 4.023 19 N -0.331 5.331 20 C 0.332 3.668 21 O -0.464 6.464 22 C -0.171 4.171 23 C -0.133 4.133 24 C 0.003 3.997 25 F -0.211 7.211 26 C -0.186 4.186 27 C -0.172 4.172 28 C -0.010 4.010 29 H 0.088 0.912 30 H 0.230 0.770 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.162 0.838 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.124 0.876 37 H 0.085 0.915 38 H 0.135 0.865 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.133 0.867 42 H 0.105 0.895 43 H 0.071 0.929 44 H 0.100 0.900 45 H 0.146 0.854 46 H 0.158 0.842 47 H 0.117 0.883 48 H 0.099 0.901 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.234 -29.699 2.459 30.257 hybrid contribution -0.052 1.514 -1.242 1.959 sum -5.286 -28.185 1.217 28.702 Atomic orbital electron populations 1.69669 1.06824 1.29422 1.50113 1.26068 0.96592 1.02471 0.96185 0.84974 0.77764 0.76542 0.78973 1.19763 1.19382 1.19616 1.19634 0.92721 0.83995 1.50137 0.90305 1.41921 1.09335 1.04712 1.64942 1.20803 0.88244 0.86089 0.82373 1.90493 1.15793 1.87925 1.56664 1.21549 0.93920 0.88093 1.02836 1.60168 1.18796 1.00387 1.51024 1.21868 0.95204 0.87658 0.98096 0.94096 1.21565 1.01029 0.97729 0.94389 1.21918 0.98049 0.93356 1.03121 1.22193 0.99405 0.99060 0.81621 1.48115 1.58102 1.17620 1.09238 1.20223 0.77024 0.86431 0.83143 1.90701 1.53275 1.75379 1.27055 1.21184 0.93042 0.91981 1.10873 1.21607 0.93957 0.98503 0.99262 1.22032 0.87903 0.90902 0.98861 1.92745 1.68213 1.70164 1.89952 1.23168 0.98300 1.03693 0.93452 1.23330 0.91096 1.05102 0.97711 1.21558 0.95748 0.82371 1.01325 0.91232 0.76968 0.92215 0.87546 0.83848 0.91257 0.91916 0.87556 0.91482 0.86542 0.89955 0.89085 0.86744 0.89484 0.92928 0.89998 0.85397 0.84182 0.88254 0.90149 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.93 13.05 21.66 0.28 -49.65 16 2 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 3 Si 0.99 43.29 29.55 68.60 2.03 45.32 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.34 -19.30 9.68 84.04 0.81 -18.48 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -29.83 5.29 -306.98 -1.62 -31.45 16 10 C 0.44 21.23 7.82 87.66 0.69 21.92 16 11 O -0.62 -35.12 15.78 -3.07 -0.05 -35.17 16 12 C 0.07 2.41 5.97 85.56 0.51 2.92 16 13 N -0.67 -21.69 5.94 -495.17 -2.94 -24.62 16 14 C 0.08 1.99 2.64 45.00 0.12 2.11 16 15 H 0.04 1.04 7.80 -2.39 -0.02 1.02 16 16 C -0.11 -2.09 5.40 30.62 0.17 -1.93 16 17 C -0.13 -1.46 6.08 30.67 0.19 -1.27 16 18 C 0.10 1.07 5.98 86.36 0.52 1.59 16 19 N -0.60 -11.15 2.97 -818.91 -2.43 -13.58 16 20 C 0.54 11.43 5.85 87.66 0.51 11.94 16 21 O -0.58 -17.90 16.40 -3.04 -0.05 -17.95 16 22 C -0.17 -2.02 0.85 -52.92 -0.05 -2.06 16 23 C -0.10 -0.89 5.52 30.60 0.17 -0.72 16 24 C 0.06 0.87 7.42 71.98 0.53 1.40 16 25 F -0.23 -4.32 17.36 44.97 0.78 -3.54 16 26 C -0.15 -1.54 9.84 30.59 0.30 -1.23 16 27 C -0.14 -0.87 8.01 30.60 0.25 -0.62 16 28 C 0.11 2.69 5.71 86.36 0.49 3.18 16 29 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 30 H 0.40 19.58 7.90 -92.70 -0.73 18.85 16 31 H 0.06 1.93 8.06 -2.39 -0.02 1.91 16 32 H 0.11 3.34 7.43 -2.39 -0.02 3.32 16 33 H 0.34 11.98 8.06 -89.69 -0.72 11.26 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.30 7.44 -2.39 -0.02 1.28 16 36 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.12 0.70 4.76 -2.39 -0.01 0.69 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 0.74 7.81 -2.39 -0.02 0.72 16 41 H 0.11 0.51 8.11 -2.39 -0.02 0.49 16 42 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.05 1.02 7.35 -2.39 -0.02 1.00 16 44 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.14 0.07 8.14 -2.39 -0.02 0.05 16 47 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.07 1.95 6.99 -2.39 -0.02 1.93 16 Total: -1.00 -75.57 398.51 1.19 -74.38 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: -0.48 Total: 37.77 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 5.67 Total: 18.50 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -6.71 Total: -119.31 kcal Atomic # 8 Polarization: -53.02 SS G_CDS: -0.10 Total: -53.12 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.78 Total: -3.54 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -75.57 1.19 -74.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208705154.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.005 kcal (2) G-P(sol) polarization free energy of solvation -75.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds