Wall clock time and date at job start Sat Apr 11 2020 06:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 120.00602 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72275 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72123 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72159 * 3 2 1 7 7 C 1.38956 * 119.99490 * 179.72143 * 2 1 3 8 8 H 1.08002 * 119.99776 * 0.27517 * 7 2 1 9 9 N 1.37097 * 119.99700 * 180.27578 * 7 2 1 10 10 C 1.34777 * 119.99758 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00229 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47254 * 180.02562 * 12 10 9 14 14 C 1.46907 * 110.99733 * 180.02562 * 13 12 10 15 15 H 1.08995 * 112.84845 * 25.33320 * 14 13 12 16 16 C 1.53783 * 113.61233 * 156.52852 * 14 13 12 17 17 C 1.53785 * 87.08011 * 139.97867 * 16 14 13 18 18 H 1.09007 * 113.61225 * 89.11391 * 17 16 14 19 19 N 1.46497 * 113.61298 * 219.93318 * 17 16 14 20 20 C 1.34777 * 119.99880 * 204.99974 * 19 17 16 21 21 O 1.21289 * 120.00088 * 0.02562 * 20 19 17 22 22 C 1.50695 * 120.00305 * 180.02562 * 20 19 17 23 23 H 1.09008 * 109.46957 * 300.00082 * 22 20 19 24 24 C 1.52998 * 109.47560 * 180.02562 * 22 20 19 25 25 C 1.52995 * 109.47481 * 180.02562 * 24 22 20 26 26 C 1.52999 * 109.47318 * 59.99334 * 25 24 22 27 27 C 1.52995 * 109.47437 * 300.00178 * 26 25 24 28 28 H 1.08998 * 109.47461 * 179.97438 * 27 26 25 29 29 F 1.39902 * 109.47360 * 300.00090 * 27 26 25 30 30 C 1.52999 * 109.47195 * 59.99661 * 22 20 19 31 31 C 1.53781 * 113.61153 * 254.13590 * 14 13 12 32 32 H 0.97004 * 119.99472 * 0.02562 * 1 2 3 33 33 H 0.97000 * 120.00509 * 359.97438 * 9 7 2 34 34 H 1.09006 * 109.46797 * 300.00302 * 12 10 9 35 35 H 1.09002 * 109.46946 * 59.99717 * 12 10 9 36 36 H 1.00897 * 111.00226 * 56.04425 * 13 12 10 37 37 H 1.08998 * 113.61391 * 254.52992 * 16 14 13 38 38 H 1.09001 * 113.61251 * 25.43102 * 16 14 13 39 39 H 0.96995 * 120.00209 * 25.00099 * 19 17 16 40 40 H 1.09008 * 109.46808 * 299.99873 * 24 22 20 41 41 H 1.09003 * 109.47584 * 59.99482 * 24 22 20 42 42 H 1.08994 * 109.47456 * 180.02562 * 25 24 22 43 43 H 1.09008 * 109.46912 * 299.99707 * 25 24 22 44 44 H 1.08998 * 109.47010 * 60.00868 * 26 25 24 45 45 H 1.09006 * 109.46980 * 179.97438 * 26 25 24 46 46 H 1.09002 * 109.47284 * 300.00278 * 30 22 20 47 47 H 1.08998 * 109.47010 * 60.00889 * 30 22 20 48 48 H 1.09003 * 113.61451 * 334.56365 * 31 14 13 49 49 H 1.08995 * 113.61710 * 105.47255 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.5016 2.0428 -1.4001 5 1 1.4429 2.6543 0.6941 6 1 3.5428 1.4417 0.7059 7 6 2.0088 -1.2034 0.0059 8 1 1.4687 -2.1387 0.0059 9 7 3.3797 -1.2035 0.0116 10 6 4.0535 -2.3707 0.0178 11 8 3.4470 -3.4211 0.0178 12 6 5.5605 -2.3709 0.0246 13 7 6.0500 -3.7559 0.0300 14 6 7.5186 -3.7951 0.0373 15 1 7.9638 -2.8980 0.4675 16 6 8.0970 -5.1024 0.6042 17 6 9.1513 -5.0282 -0.5129 18 1 10.0440 -4.4681 -0.2342 19 7 9.4598 -6.3272 -1.1159 20 6 10.6533 -6.5284 -1.7088 21 8 11.4721 -5.6343 -1.7428 22 6 10.9705 -7.8644 -2.3296 23 1 10.9216 -8.6407 -1.5660 24 6 12.3778 -7.8272 -2.9289 25 6 12.6996 -9.1834 -3.5597 26 6 11.6835 -9.4869 -4.6626 27 6 10.2763 -9.5243 -4.0633 28 1 9.5523 -9.7400 -4.8491 29 9 10.2128 -10.5210 -3.0837 30 6 9.9541 -8.1688 -3.4320 31 6 8.1307 -4.1994 -1.3142 32 1 -0.4849 0.8401 -0.0004 33 1 3.8648 -0.3635 0.0112 34 1 5.9280 -1.8594 -0.8651 35 1 5.9199 -1.8546 0.9149 36 1 5.6781 -4.2739 -0.7519 37 1 8.5139 -4.9973 1.6058 38 1 7.4229 -5.9541 0.5124 39 1 8.8052 -7.0424 -1.0885 40 1 12.4271 -7.0508 -3.6925 41 1 13.1017 -7.6105 -2.1433 42 1 13.7023 -9.1570 -3.9862 43 1 12.6502 -9.9600 -2.7964 44 1 11.7329 -8.7104 -5.4259 45 1 11.9131 -10.4530 -5.1123 46 1 8.9517 -8.1955 -3.0047 47 1 10.0031 -7.3926 -4.1957 48 1 7.4659 -4.8038 -1.9313 49 1 8.5749 -3.3665 -1.8590 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266683452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:01 Heat of formation + Delta-G solvation = -117.453028 kcal Electronic energy + Delta-G solvation = -29146.483606 eV Core-core repulsion = 24829.541986 eV Total energy + Delta-G solvation = -4316.941620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.10764 -40.65775 -39.23854 -38.24712 -37.32782 -34.73340 -33.94035 -32.83196 -31.67287 -31.35968 -30.85907 -27.09826 -25.86435 -24.98798 -23.92671 -23.23571 -22.43778 -20.85498 -20.34894 -19.90754 -19.32838 -18.32173 -17.71596 -16.90526 -16.43401 -16.08517 -15.89357 -15.78211 -15.56663 -15.35661 -14.98870 -14.83280 -14.48854 -14.27368 -13.95307 -13.77130 -13.48578 -13.21465 -13.00520 -12.92718 -12.84184 -12.65059 -12.46558 -12.28686 -12.11731 -12.03771 -11.80590 -11.70115 -11.34271 -11.22897 -11.19939 -11.05937 -10.96634 -10.92375 -10.61264 -10.60478 -9.98967 -9.92269 -9.58657 -9.28073 -8.59883 -8.20613 -8.11788 -6.32413 -3.83866 2.30705 2.85423 3.01954 3.05784 3.14290 3.72546 3.90682 3.94299 4.07586 4.09432 4.11405 4.24895 4.35618 4.45955 4.53045 4.56453 4.60771 4.70593 4.74589 4.79320 4.86243 4.94222 4.96324 5.03869 5.20889 5.31543 5.35935 5.42976 5.45810 5.54483 5.55912 5.58279 5.62329 5.63966 5.72036 5.75340 5.83314 5.84820 5.87414 5.92066 5.98025 6.31497 7.09862 7.21366 7.53696 7.57299 7.92712 8.13093 8.58353 8.93563 9.41103 9.81150 10.80668 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.023083 B = 0.001677 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.739260 B =16691.140662 C =17175.612440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.566 6.566 12 C 0.047 3.953 13 N -0.655 5.655 14 C 0.071 3.929 15 H 0.100 0.900 16 C -0.133 4.133 17 C 0.121 3.879 18 H 0.114 0.886 19 N -0.717 5.717 20 C 0.519 3.481 21 O -0.540 6.540 22 C -0.108 4.108 23 H 0.103 0.897 24 C -0.100 4.100 25 C -0.121 4.121 26 C -0.148 4.148 27 C 0.094 3.906 28 H 0.088 0.912 29 F -0.211 7.211 30 C -0.138 4.138 31 C -0.182 4.182 32 H 0.273 0.727 33 H 0.371 0.629 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.353 0.647 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.402 0.598 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.777 -15.728 -7.704 31.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.448 6.448 12 C -0.086 4.086 13 N -0.286 5.286 14 C -0.041 4.041 15 H 0.118 0.882 16 C -0.172 4.172 17 C 0.016 3.984 18 H 0.132 0.868 19 N -0.367 5.367 20 C 0.305 3.695 21 O -0.417 6.417 22 C -0.129 4.129 23 H 0.121 0.879 24 C -0.138 4.138 25 C -0.159 4.159 26 C -0.186 4.186 27 C 0.058 3.942 28 H 0.105 0.895 29 F -0.192 7.192 30 C -0.176 4.176 31 C -0.222 4.222 32 H 0.084 0.916 33 H 0.203 0.797 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.173 0.827 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.237 0.763 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.106 0.894 48 H 0.106 0.894 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 26.658 -15.753 -7.014 31.749 hybrid contribution 0.310 1.349 -0.827 1.612 sum 26.968 -14.404 -7.842 31.563 Atomic orbital electron populations 1.69624 1.05646 1.27505 1.49312 1.25046 0.95503 0.97993 0.97629 0.86667 0.79820 0.84017 0.78855 1.19664 1.20150 1.19461 1.19435 0.79260 0.96633 1.48110 0.86287 1.42211 1.07543 1.06180 1.67026 1.19732 0.88238 0.84562 0.84001 1.90562 1.69470 1.30951 1.53800 1.21756 0.94964 0.90555 1.01306 1.59988 1.05051 1.12528 1.51027 1.22820 0.88201 0.98035 0.95006 0.88198 1.23464 0.96448 0.99152 0.98119 1.22444 0.97377 0.84302 0.94321 0.86805 1.46034 1.17220 1.15384 1.58079 1.20619 0.81519 0.89619 0.77740 1.90701 1.47606 1.44891 1.58467 1.21327 0.97372 0.95542 0.98680 0.87911 1.21370 0.94284 0.97291 1.00864 1.21535 0.98828 0.97484 0.98049 1.22165 0.93980 1.03387 0.99050 1.21527 0.98804 0.85254 0.88651 0.89454 1.92812 1.97633 1.63465 1.65305 1.22137 0.99271 0.97343 0.98873 1.24274 0.99119 1.00448 0.98388 0.91607 0.79676 0.93638 0.89408 0.82667 0.90546 0.88948 0.76344 0.90985 0.90819 0.91027 0.91222 0.89953 0.90613 0.90093 0.89402 0.89446 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.67 13.96 55.50 0.77 -24.90 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.29 27.74 -169.99 -4.71 14.57 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 7 C -0.31 -8.63 10.16 -14.93 -0.15 -8.78 16 8 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 9 N -0.59 -13.97 5.09 -10.96 -0.06 -14.02 16 10 C 0.45 10.07 7.82 -10.98 -0.09 9.98 16 11 O -0.57 -15.04 15.78 5.55 0.09 -14.95 16 12 C 0.05 0.75 6.02 -4.98 -0.03 0.72 16 13 N -0.65 -9.57 6.24 -107.13 -0.67 -10.24 16 14 C 0.07 0.77 4.16 -66.90 -0.28 0.49 16 15 H 0.10 1.01 7.88 -51.93 -0.41 0.60 16 16 C -0.13 -1.23 7.63 -25.92 -0.20 -1.43 16 17 C 0.12 1.10 4.24 -67.02 -0.28 0.82 16 18 H 0.11 1.17 7.46 -51.93 -0.39 0.78 16 19 N -0.72 -5.75 5.25 -52.92 -0.28 -6.03 16 20 C 0.52 4.89 7.15 -10.99 -0.08 4.81 16 21 O -0.54 -7.14 15.58 5.55 0.09 -7.05 16 22 C -0.11 -0.74 2.40 -91.78 -0.22 -0.96 16 23 H 0.10 0.67 7.80 -51.92 -0.41 0.26 16 24 C -0.10 -0.69 4.49 -26.73 -0.12 -0.81 16 25 C -0.12 -0.65 5.80 -26.73 -0.16 -0.80 16 26 C -0.15 -0.67 5.72 -26.73 -0.15 -0.83 16 27 C 0.09 0.49 4.12 -26.76 -0.11 0.38 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 29 F -0.21 -1.62 16.04 2.25 0.04 -1.58 16 30 C -0.14 -0.75 4.89 -26.75 -0.13 -0.88 16 31 C -0.18 -1.75 7.52 -25.82 -0.19 -1.95 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.27 8.13 -51.93 -0.42 0.85 16 36 H 0.35 5.33 7.91 -39.29 -0.31 5.02 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.87 8.12 -51.93 -0.42 0.45 16 39 H 0.40 2.43 8.15 -40.82 -0.33 2.10 16 40 H 0.07 0.55 8.10 -51.92 -0.42 0.13 16 41 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.41 7.80 -51.92 -0.41 0.00 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 0.39 7.57 -51.93 -0.39 -0.01 16 47 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.09 0.84 7.83 -51.93 -0.41 0.44 16 49 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 395.50 15.07 5.96 5.96 Total: -1.00 -34.49 395.50 -8.97 -43.46 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -7.91 Total: 12.98 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -2.29 Total: 1.81 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.23 Total: -55.19 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: 0.17 Total: -22.01 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.49 -8.97 -43.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266683452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.994 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds