Wall clock time and date at job start Sat Apr 11 2020 06:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 120.00602 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72275 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72123 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72159 * 3 2 1 7 7 C 1.38956 * 119.99490 * 179.72143 * 2 1 3 8 8 H 1.08002 * 119.99776 * 0.27517 * 7 2 1 9 9 N 1.37097 * 119.99700 * 180.27578 * 7 2 1 10 10 C 1.34777 * 119.99758 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00229 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47254 * 180.02562 * 12 10 9 14 14 C 1.46907 * 110.99733 * 180.02562 * 13 12 10 15 15 H 1.08995 * 112.84845 * 25.33320 * 14 13 12 16 16 C 1.53783 * 113.61233 * 156.52852 * 14 13 12 17 17 C 1.53785 * 87.08011 * 139.97867 * 16 14 13 18 18 H 1.09007 * 113.61225 * 89.11391 * 17 16 14 19 19 N 1.46497 * 113.61298 * 219.93318 * 17 16 14 20 20 C 1.34777 * 119.99880 * 204.99974 * 19 17 16 21 21 O 1.21289 * 120.00088 * 0.02562 * 20 19 17 22 22 C 1.50695 * 120.00305 * 180.02562 * 20 19 17 23 23 H 1.09008 * 109.46957 * 300.00082 * 22 20 19 24 24 C 1.52998 * 109.47560 * 180.02562 * 22 20 19 25 25 C 1.52995 * 109.47481 * 180.02562 * 24 22 20 26 26 C 1.52999 * 109.47318 * 59.99334 * 25 24 22 27 27 C 1.52995 * 109.47437 * 300.00178 * 26 25 24 28 28 H 1.08998 * 109.47461 * 179.97438 * 27 26 25 29 29 F 1.39902 * 109.47360 * 300.00090 * 27 26 25 30 30 C 1.52999 * 109.47195 * 59.99661 * 22 20 19 31 31 C 1.53781 * 113.61153 * 254.13590 * 14 13 12 32 32 H 0.97004 * 119.99472 * 0.02562 * 1 2 3 33 33 H 0.97000 * 120.00509 * 359.97438 * 9 7 2 34 34 H 1.09006 * 109.46797 * 300.00302 * 12 10 9 35 35 H 1.09002 * 109.46946 * 59.99717 * 12 10 9 36 36 H 1.00897 * 111.00226 * 56.04425 * 13 12 10 37 37 H 1.08998 * 113.61391 * 254.52992 * 16 14 13 38 38 H 1.09001 * 113.61251 * 25.43102 * 16 14 13 39 39 H 0.96995 * 120.00209 * 25.00099 * 19 17 16 40 40 H 1.09008 * 109.46808 * 299.99873 * 24 22 20 41 41 H 1.09003 * 109.47584 * 59.99482 * 24 22 20 42 42 H 1.08994 * 109.47456 * 180.02562 * 25 24 22 43 43 H 1.09008 * 109.46912 * 299.99707 * 25 24 22 44 44 H 1.08998 * 109.47010 * 60.00868 * 26 25 24 45 45 H 1.09006 * 109.46980 * 179.97438 * 26 25 24 46 46 H 1.09002 * 109.47284 * 300.00278 * 30 22 20 47 47 H 1.08998 * 109.47010 * 60.00889 * 30 22 20 48 48 H 1.09003 * 113.61451 * 334.56365 * 31 14 13 49 49 H 1.08995 * 113.61710 * 105.47255 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.5016 2.0428 -1.4001 5 1 1.4429 2.6543 0.6941 6 1 3.5428 1.4417 0.7059 7 6 2.0088 -1.2034 0.0059 8 1 1.4687 -2.1387 0.0059 9 7 3.3797 -1.2035 0.0116 10 6 4.0535 -2.3707 0.0178 11 8 3.4470 -3.4211 0.0178 12 6 5.5605 -2.3709 0.0246 13 7 6.0500 -3.7559 0.0300 14 6 7.5186 -3.7951 0.0373 15 1 7.9638 -2.8980 0.4675 16 6 8.0970 -5.1024 0.6042 17 6 9.1513 -5.0282 -0.5129 18 1 10.0440 -4.4681 -0.2342 19 7 9.4598 -6.3272 -1.1159 20 6 10.6533 -6.5284 -1.7088 21 8 11.4721 -5.6343 -1.7428 22 6 10.9705 -7.8644 -2.3296 23 1 10.9216 -8.6407 -1.5660 24 6 12.3778 -7.8272 -2.9289 25 6 12.6996 -9.1834 -3.5597 26 6 11.6835 -9.4869 -4.6626 27 6 10.2763 -9.5243 -4.0633 28 1 9.5523 -9.7400 -4.8491 29 9 10.2128 -10.5210 -3.0837 30 6 9.9541 -8.1688 -3.4320 31 6 8.1307 -4.1994 -1.3142 32 1 -0.4849 0.8401 -0.0004 33 1 3.8648 -0.3635 0.0112 34 1 5.9280 -1.8594 -0.8651 35 1 5.9199 -1.8546 0.9149 36 1 5.6781 -4.2739 -0.7519 37 1 8.5139 -4.9973 1.6058 38 1 7.4229 -5.9541 0.5124 39 1 8.8052 -7.0424 -1.0885 40 1 12.4271 -7.0508 -3.6925 41 1 13.1017 -7.6105 -2.1433 42 1 13.7023 -9.1570 -3.9862 43 1 12.6502 -9.9600 -2.7964 44 1 11.7329 -8.7104 -5.4259 45 1 11.9131 -10.4530 -5.1123 46 1 8.9517 -8.1955 -3.0047 47 1 10.0031 -7.3926 -4.1957 48 1 7.4659 -4.8038 -1.9313 49 1 8.5749 -3.3665 -1.8590 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266683452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:00 Heat of formation + Delta-G solvation = -143.478805 kcal Electronic energy + Delta-G solvation = -29147.612169 eV Core-core repulsion = 24829.541986 eV Total energy + Delta-G solvation = -4318.070183 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.59873 -41.41156 -40.40210 -39.66406 -37.94030 -36.15762 -35.48340 -33.87269 -33.63559 -31.92958 -31.31918 -28.59381 -26.63215 -26.15592 -25.14391 -23.76243 -23.20691 -21.56824 -21.36141 -20.97580 -20.51474 -20.13179 -18.33971 -17.91274 -17.38553 -17.03700 -16.90914 -16.55020 -16.47717 -16.34486 -16.10213 -15.85652 -15.45100 -15.21992 -15.09681 -14.79166 -14.48770 -14.43822 -14.31725 -14.07109 -13.56945 -13.50026 -13.41770 -13.28443 -13.16078 -12.88729 -12.83482 -12.53108 -12.41649 -12.23748 -12.08460 -12.01084 -11.89138 -11.77160 -11.70652 -11.51084 -11.48480 -11.04322 -10.65654 -10.41860 -10.24847 -10.03799 -9.23810 -8.41336 -6.02179 1.30811 1.35610 1.44839 1.57046 1.95903 2.16472 2.23127 2.76911 3.15338 3.37258 3.42064 3.51229 3.60335 3.64901 3.74490 3.86498 3.92235 3.99164 4.05450 4.08756 4.15163 4.17915 4.34995 4.36705 4.46649 4.49809 4.53257 4.60141 4.64463 4.79080 4.81149 4.89248 4.99431 5.01631 5.04911 5.08603 5.11566 5.14228 5.21785 5.27072 5.44212 5.52563 5.58156 5.92438 6.10778 6.39711 6.53972 6.59982 6.88125 7.22188 7.39957 7.96390 8.76234 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.023083 B = 0.001677 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.739260 B =16691.140662 C =17175.612440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.965 3.035 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.231 1.231 7 C -0.329 4.329 8 H 0.055 0.945 9 N -0.591 5.591 10 C 0.447 3.553 11 O -0.615 6.615 12 C 0.061 3.939 13 N -0.671 5.671 14 C 0.069 3.931 15 H 0.114 0.886 16 C -0.125 4.125 17 C 0.126 3.874 18 H 0.105 0.895 19 N -0.708 5.708 20 C 0.518 3.482 21 O -0.581 6.581 22 C -0.102 4.102 23 H 0.107 0.893 24 C -0.098 4.098 25 C -0.118 4.118 26 C -0.147 4.147 27 C 0.090 3.910 28 H 0.106 0.894 29 F -0.226 7.226 30 C -0.135 4.135 31 C -0.174 4.174 32 H 0.279 0.721 33 H 0.390 0.610 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.347 0.653 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.413 0.587 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.087 0.913 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.378 -14.679 -8.197 33.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.214 4.214 3 Si 0.785 3.215 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.154 1.154 7 C -0.459 4.459 8 H 0.073 0.927 9 N -0.233 5.233 10 C 0.235 3.765 11 O -0.499 6.499 12 C -0.071 4.071 13 N -0.302 5.302 14 C -0.041 4.041 15 H 0.132 0.868 16 C -0.164 4.164 17 C 0.021 3.979 18 H 0.123 0.877 19 N -0.358 5.358 20 C 0.305 3.695 21 O -0.460 6.460 22 C -0.123 4.123 23 H 0.125 0.875 24 C -0.136 4.136 25 C -0.155 4.155 26 C -0.185 4.185 27 C 0.054 3.946 28 H 0.123 0.877 29 F -0.207 7.207 30 C -0.173 4.173 31 C -0.214 4.214 32 H 0.088 0.912 33 H 0.225 0.775 34 H 0.095 0.905 35 H 0.132 0.868 36 H 0.167 0.833 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.250 0.750 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.111 0.889 45 H 0.102 0.898 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.106 0.894 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 29.276 -14.734 -7.500 33.622 hybrid contribution -0.542 0.879 -0.666 1.229 sum 28.734 -13.856 -8.166 32.928 Atomic orbital electron populations 1.69807 1.08139 1.29233 1.50281 1.26123 0.96476 1.02723 0.96072 0.85365 0.79503 0.76718 0.79932 1.18143 1.20087 1.15436 1.19016 0.81562 0.94923 1.50368 0.92653 1.42043 1.05801 1.07663 1.67767 1.21037 0.91086 0.83280 0.81052 1.90541 1.71443 1.32779 1.55156 1.21690 0.89344 0.92180 1.03933 1.60011 1.07387 1.11669 1.51167 1.22949 0.85828 0.99326 0.96030 0.86807 1.23402 0.96122 0.98422 0.98466 1.22282 0.96837 0.84606 0.94220 0.87729 1.45973 1.17147 1.15409 1.57283 1.21050 0.81184 0.90020 0.77209 1.90683 1.48867 1.46372 1.60128 1.21304 0.97816 0.94006 0.99189 0.87459 1.21332 0.94035 0.97991 1.00257 1.21504 0.99667 0.96175 0.98186 1.22181 0.93225 1.04183 0.98865 1.21704 0.99737 0.84517 0.88628 0.87664 1.92785 1.97731 1.64119 1.66048 1.22141 0.99082 0.97676 0.98436 1.24194 0.98905 1.00458 0.97883 0.91159 0.77469 0.90523 0.86807 0.83333 0.89883 0.89044 0.75042 0.91807 0.92239 0.90223 0.91769 0.88924 0.89845 0.89326 0.89080 0.89417 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.96 21.66 0.30 -55.88 16 2 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 3 Si 0.96 38.52 27.74 68.60 1.90 40.42 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 6 H -0.23 -7.74 6.52 99.48 0.65 -7.10 16 7 C -0.33 -19.24 10.16 84.04 0.85 -18.38 16 8 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 9 N -0.59 -27.58 5.09 -306.97 -1.56 -29.14 16 10 C 0.45 19.84 7.82 87.66 0.69 20.53 16 11 O -0.61 -33.61 15.78 -3.07 -0.05 -33.66 16 12 C 0.06 1.77 6.02 85.56 0.52 2.29 16 13 N -0.67 -18.27 6.24 -492.83 -3.07 -21.35 16 14 C 0.07 1.31 4.16 45.44 0.19 1.50 16 15 H 0.11 1.88 7.88 -2.39 -0.02 1.86 16 16 C -0.13 -2.07 7.63 31.12 0.24 -1.83 16 17 C 0.13 2.08 4.24 45.58 0.19 2.28 16 18 H 0.10 2.01 7.46 -2.38 -0.02 1.99 16 19 N -0.71 -10.37 5.25 -439.74 -2.31 -12.68 16 20 C 0.52 9.34 7.15 87.66 0.63 9.97 16 21 O -0.58 -15.22 15.58 -3.06 -0.05 -15.27 16 22 C -0.10 -1.30 2.40 -11.54 -0.03 -1.32 16 23 H 0.11 1.28 7.80 -2.38 -0.02 1.27 16 24 C -0.10 -1.30 4.49 30.59 0.14 -1.17 16 25 C -0.12 -1.13 5.80 30.59 0.18 -0.95 16 26 C -0.15 -1.07 5.72 30.59 0.17 -0.89 16 27 C 0.09 0.77 4.12 30.58 0.13 0.90 16 28 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 29 F -0.23 -3.14 16.04 44.97 0.72 -2.42 16 30 C -0.14 -1.24 4.89 30.58 0.15 -1.09 16 31 C -0.17 -2.98 7.52 31.18 0.23 -2.75 16 32 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.39 14.99 5.76 -92.71 -0.53 14.45 16 34 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.11 2.81 8.13 -2.39 -0.02 2.79 16 36 H 0.35 10.09 7.91 -89.70 -0.71 9.38 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.09 1.56 8.12 -2.39 -0.02 1.54 16 39 H 0.41 4.29 8.15 -92.71 -0.76 3.54 16 40 H 0.06 0.95 8.10 -2.38 -0.02 0.93 16 41 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 42 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.06 0.69 7.80 -2.38 -0.02 0.67 16 44 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 46 H 0.09 0.68 7.57 -2.39 -0.02 0.66 16 47 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.09 1.52 7.83 -2.39 -0.02 1.50 16 49 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -80.07 395.50 -0.45 -80.52 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: -1.07 Total: 40.74 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 4.74 Total: 8.71 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -6.64 Total: -119.04 kcal Atomic # 8 Polarization: -48.83 SS G_CDS: -0.10 Total: -48.93 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.72 Total: -2.42 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.90 Total: 40.42 kcal Total: -80.07 -0.45 -80.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266683452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.957 kcal (2) G-P(sol) polarization free energy of solvation -80.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds