Wall clock time and date at job start Sat Apr 11 2020 06:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 120.00028 * 2 1 4 4 H 1.48506 * 109.46791 * 269.99901 * 3 2 1 5 5 H 1.48501 * 109.46996 * 29.99635 * 3 2 1 6 6 H 1.48495 * 109.47162 * 150.00019 * 3 2 1 7 7 C 1.38815 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99626 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99727 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99778 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47194 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.88890 * 302.57121 * 11 10 9 13 13 C 1.55164 * 111.03502 * 178.66775 * 11 10 9 14 14 C 1.54316 * 102.85919 * 206.21440 * 13 11 10 15 15 N 1.47019 * 107.27721 * 22.52798 * 14 13 11 16 16 C 1.34775 * 125.64935 * 180.96043 * 15 14 13 17 17 O 1.21552 * 120.00409 * 185.02334 * 16 15 14 18 18 C 1.47863 * 120.00204 * 5.03309 * 16 15 14 19 19 C 1.39623 * 120.10401 * 352.24553 * 18 16 15 20 20 C 1.37981 * 120.00078 * 179.97438 * 19 18 16 21 21 C 1.38247 * 120.23219 * 0.02562 * 20 19 18 22 22 C 1.38981 * 120.21492 * 359.97438 * 21 20 19 23 23 N 1.39715 * 119.99815 * 179.97438 * 22 21 20 24 24 C 1.48225 * 111.00085 * 119.90240 * 23 22 21 25 25 C 1.51116 * 105.36344 * 144.89663 * 24 23 22 26 26 C 1.30958 * 109.45728 * 343.01952 * 25 24 23 27 27 C 1.48231 * 110.99708 * 233.53152 * 23 22 21 28 28 C 1.38678 * 119.99800 * 0.02562 * 22 21 20 29 29 C 1.47424 * 108.70382 * 0.70458 * 15 14 13 30 30 H 0.97003 * 120.00054 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00528 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.47372 * 59.99941 * 10 9 7 33 33 H 1.09004 * 109.47302 * 300.00303 * 10 9 7 34 34 H 1.08991 * 110.72215 * 324.77165 * 13 11 10 35 35 H 1.08999 * 110.71641 * 87.87151 * 13 11 10 36 36 H 1.08996 * 109.99069 * 263.05132 * 14 13 11 37 37 H 1.08998 * 109.77405 * 141.88462 * 14 13 11 38 38 H 1.07994 * 119.99863 * 0.02562 * 19 18 16 39 39 H 1.08006 * 119.88303 * 180.28594 * 20 19 18 40 40 H 1.07995 * 119.89326 * 179.97438 * 21 20 19 41 41 H 1.09004 * 110.25960 * 263.86880 * 24 23 22 42 42 H 1.09001 * 110.26682 * 25.91680 * 24 23 22 43 43 H 1.07999 * 125.26928 * 162.99897 * 25 24 23 44 44 H 1.08000 * 125.27234 * 179.97438 * 26 25 24 45 45 H 1.08992 * 110.27015 * 334.07868 * 27 23 22 46 46 H 1.09005 * 110.26303 * 96.04083 * 27 23 22 47 47 H 1.07998 * 120.11633 * 179.97438 * 28 22 21 48 48 H 1.08998 * 110.37326 * 94.93698 * 29 15 14 49 49 H 1.09000 * 110.36746 * 217.14768 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0580 -3.6567 0.0027 11 6 1.0638 -4.8197 0.0044 12 1 0.3948 -4.7579 0.8628 13 6 1.8023 -6.1839 -0.0280 14 6 0.7670 -7.1193 -0.6871 15 7 -0.1574 -6.2741 -1.4569 16 6 -1.2173 -6.7119 -2.1649 17 8 -1.8618 -5.9325 -2.8392 18 6 -1.5966 -8.1404 -2.1213 19 6 -0.7692 -9.0654 -1.4816 20 6 -1.1254 -10.3979 -1.4417 21 6 -2.3001 -10.8224 -2.0341 22 6 -3.1307 -9.9096 -2.6734 23 7 -4.3166 -10.3437 -3.2710 24 6 -5.4925 -9.6751 -2.6650 25 6 -6.4718 -9.4815 -3.7995 26 6 -5.8470 -9.6147 -4.9427 27 6 -4.3873 -9.9106 -4.6869 28 6 -2.7817 -8.5683 -2.7190 29 6 0.2634 -4.8678 -1.3210 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0016 32 1 2.6847 -3.7137 0.8928 33 1 2.6847 -3.7153 -0.8872 34 1 2.7074 -6.1182 -0.6316 35 1 2.0375 -6.5191 0.9821 36 1 0.2181 -7.6665 0.0792 37 1 1.2729 -7.8178 -1.3537 38 1 0.1492 -8.7379 -1.0173 39 1 -0.4862 -11.1111 -0.9424 40 1 -2.5734 -11.8666 -2.0000 41 1 -5.9298 -10.3076 -1.8925 42 1 -5.2044 -8.7109 -2.2462 43 1 -7.5241 -9.2670 -3.6852 44 1 -6.3041 -9.5270 -5.9172 45 1 -3.7880 -9.0129 -4.8376 46 1 -4.0419 -10.7092 -5.3436 47 1 -3.4254 -7.8574 -3.2156 48 1 0.8986 -4.5791 -2.1584 49 1 -0.6077 -4.2150 -1.2640 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267062372.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:11 Heat of formation + Delta-G solvation = 75.263488 kcal Electronic energy + Delta-G solvation = -28875.919394 eV Core-core repulsion = 24998.103814 eV Total energy + Delta-G solvation = -3877.815580 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.09409 -40.10053 -38.16947 -37.46208 -34.80588 -33.37501 -32.27848 -31.35183 -30.44453 -29.50249 -28.77871 -28.26659 -25.86796 -24.37414 -23.75304 -22.76585 -22.11222 -21.14592 -20.17682 -19.83669 -19.75269 -17.86335 -17.04481 -16.77023 -16.53340 -16.07407 -15.96882 -15.32752 -14.77576 -14.59230 -14.50449 -14.22722 -14.07038 -13.80442 -13.54445 -13.25541 -13.22320 -13.19138 -12.80868 -12.66137 -12.63725 -12.53091 -12.15492 -11.99258 -11.76152 -11.67603 -11.47501 -11.04948 -10.86857 -10.64438 -10.55765 -10.45083 -10.17836 -10.02240 -9.83759 -9.68288 -9.27184 -9.02850 -8.88716 -8.75802 -8.60555 -6.93794 -5.76109 -3.05779 0.63000 0.92267 1.79388 2.72266 2.92613 3.44169 3.46621 3.48819 3.50875 3.56558 4.24572 4.29418 4.45904 4.47430 4.55010 4.60876 4.74195 4.81245 4.88082 4.97598 5.00838 5.10762 5.15155 5.16157 5.21825 5.27412 5.29960 5.33006 5.50113 5.54570 5.58100 5.58569 5.82904 5.90216 5.95021 5.96544 5.97525 6.01042 6.03362 6.06289 6.08597 6.22853 6.36005 6.36246 6.43818 6.45588 6.65933 6.79468 6.94767 7.50233 7.69484 8.14206 8.41941 9.53224 10.09864 10.44044 11.46535 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016952 B = 0.002153 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.329296 B =13000.890201 C =14312.042902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.085 0.915 13 C -0.129 4.129 14 C 0.090 3.910 15 N -0.611 5.611 16 C 0.567 3.433 17 O -0.534 6.534 18 C -0.115 4.115 19 C -0.126 4.126 20 C -0.121 4.121 21 C -0.071 4.071 22 C 0.063 3.937 23 N -0.467 5.467 24 C 0.052 3.948 25 C -0.167 4.167 26 C -0.167 4.167 27 C 0.050 3.950 28 C -0.092 4.092 29 C 0.116 3.884 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.025 0.975 33 H 0.022 0.978 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.164 0.836 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.068 0.932 46 H 0.091 0.909 47 H 0.134 0.866 48 H 0.074 0.926 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.873 -27.623 -4.206 28.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.104 0.896 13 C -0.167 4.167 14 C -0.032 4.032 15 N -0.344 5.344 16 C 0.356 3.644 17 O -0.412 6.412 18 C -0.119 4.119 19 C -0.143 4.143 20 C -0.140 4.140 21 C -0.090 4.090 22 C -0.031 4.031 23 N -0.188 5.188 24 C -0.073 4.073 25 C -0.186 4.186 26 C -0.185 4.185 27 C -0.076 4.076 28 C -0.113 4.113 29 C -0.005 4.005 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.180 0.820 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.086 0.914 46 H 0.109 0.891 47 H 0.151 0.849 48 H 0.092 0.908 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.159 -27.693 -4.543 28.731 hybrid contribution 0.084 1.809 -0.129 1.816 sum -6.075 -25.884 -4.672 26.995 Atomic orbital electron populations 1.69661 1.05126 1.25729 1.57474 1.24762 0.95520 0.97755 1.02897 0.86187 0.78609 0.83829 0.77530 1.21694 1.21772 1.20762 1.19203 0.91010 0.84104 1.43001 0.91137 1.42365 1.05911 0.99937 1.89558 1.20588 0.92695 0.84780 0.98238 1.22597 0.97864 0.94809 0.97227 0.89645 1.22739 0.97769 0.94710 1.01478 1.22544 0.91448 0.94183 0.95039 1.48427 1.27397 1.09511 1.49069 1.17957 0.79467 0.87557 0.79395 1.90805 1.52672 1.56872 1.40859 1.19806 0.96697 0.93234 1.02117 1.22844 1.00997 0.93281 0.97219 1.21127 0.96899 0.95782 1.00190 1.21174 0.92999 0.99663 0.95160 1.18934 0.93160 0.91329 0.99652 1.63346 1.00295 1.52576 1.02564 1.22241 0.89562 0.98324 0.97208 1.23565 0.99590 1.00927 0.94478 1.23559 0.95143 1.00801 0.99040 1.22268 0.95372 1.00476 0.89446 1.21754 0.96125 0.95942 0.97438 1.22367 0.99743 0.80611 0.97767 0.93449 0.78204 0.95740 0.96000 0.90049 0.89725 0.90419 0.90544 0.81979 0.84932 0.84947 0.89098 0.91578 0.84344 0.84356 0.91418 0.89123 0.84870 0.90813 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.54 13.06 55.49 0.72 -27.81 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.73 -18.36 5.45 -59.90 -0.33 -18.68 16 10 C 0.17 3.14 5.71 -4.04 -0.02 3.12 16 11 C -0.11 -1.59 3.10 -88.47 -0.27 -1.87 16 12 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 13 C -0.13 -1.35 6.42 -24.90 -0.16 -1.51 16 14 C 0.09 0.90 4.86 -3.07 -0.01 0.88 16 15 N -0.61 -8.76 3.33 -175.49 -0.58 -9.34 16 16 C 0.57 9.05 7.81 -12.32 -0.10 8.95 16 17 O -0.53 -10.68 16.67 5.32 0.09 -10.59 16 18 C -0.11 -1.46 5.87 -104.99 -0.62 -2.07 16 19 C -0.13 -1.20 8.59 -39.16 -0.34 -1.53 16 20 C -0.12 -0.96 10.02 -39.67 -0.40 -1.36 16 21 C -0.07 -0.62 9.96 -39.30 -0.39 -1.01 16 22 C 0.06 0.66 4.91 -83.83 -0.41 0.25 16 23 N -0.47 -4.59 5.58 -171.20 -0.96 -5.54 16 24 C 0.05 0.48 6.47 -4.04 -0.03 0.45 16 25 C -0.17 -1.33 10.95 -35.81 -0.39 -1.72 16 26 C -0.17 -1.33 10.95 -35.81 -0.39 -1.72 16 27 C 0.05 0.46 6.44 -4.04 -0.03 0.43 16 28 C -0.09 -1.13 7.23 -38.97 -0.28 -1.41 16 29 C 0.12 1.95 6.06 -2.53 -0.02 1.93 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 31 H 0.38 10.23 7.53 -40.82 -0.31 9.92 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 34 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.65 6.67 -51.93 -0.35 0.30 16 37 H 0.08 0.61 6.80 -51.93 -0.35 0.25 16 38 H 0.16 1.24 2.76 -57.48 -0.16 1.08 16 39 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 40 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.67 6.75 -51.93 -0.35 0.32 16 43 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.07 0.69 6.29 -51.93 -0.33 0.36 16 46 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.13 1.79 6.64 -52.49 -0.35 1.44 16 48 H 0.07 1.30 8.00 -51.93 -0.42 0.88 16 49 H 0.08 1.66 8.09 -51.93 -0.42 1.24 16 LS Contribution 390.57 15.07 5.89 5.89 Total: -1.00 -34.29 390.57 -11.51 -45.80 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -7.22 Total: 8.35 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -4.10 Total: -5.58 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -1.14 Total: -61.38 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.29 -11.51 -45.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267062372.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.061 kcal (2) G-P(sol) polarization free energy of solvation -34.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds