Wall clock time and date at job start Sat Apr 11 2020 06:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 120.00028 * 2 1 4 4 H 1.48506 * 109.46791 * 269.99901 * 3 2 1 5 5 H 1.48501 * 109.46996 * 29.99635 * 3 2 1 6 6 H 1.48495 * 109.47162 * 150.00019 * 3 2 1 7 7 C 1.38815 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99626 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99727 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99778 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47194 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.88890 * 302.57121 * 11 10 9 13 13 C 1.55164 * 111.03502 * 178.66775 * 11 10 9 14 14 C 1.54316 * 102.85919 * 206.21440 * 13 11 10 15 15 N 1.47019 * 107.27721 * 22.52798 * 14 13 11 16 16 C 1.34775 * 125.64935 * 180.96043 * 15 14 13 17 17 O 1.21552 * 120.00409 * 185.02334 * 16 15 14 18 18 C 1.47863 * 120.00204 * 5.03309 * 16 15 14 19 19 C 1.39623 * 120.10401 * 352.24553 * 18 16 15 20 20 C 1.37981 * 120.00078 * 179.97438 * 19 18 16 21 21 C 1.38247 * 120.23219 * 0.02562 * 20 19 18 22 22 C 1.38981 * 120.21492 * 359.97438 * 21 20 19 23 23 N 1.39715 * 119.99815 * 179.97438 * 22 21 20 24 24 C 1.48225 * 111.00085 * 119.90240 * 23 22 21 25 25 C 1.51116 * 105.36344 * 144.89663 * 24 23 22 26 26 C 1.30958 * 109.45728 * 343.01952 * 25 24 23 27 27 C 1.48231 * 110.99708 * 233.53152 * 23 22 21 28 28 C 1.38678 * 119.99800 * 0.02562 * 22 21 20 29 29 C 1.47424 * 108.70382 * 0.70458 * 15 14 13 30 30 H 0.97003 * 120.00054 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00528 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.47372 * 59.99941 * 10 9 7 33 33 H 1.09004 * 109.47302 * 300.00303 * 10 9 7 34 34 H 1.08991 * 110.72215 * 324.77165 * 13 11 10 35 35 H 1.08999 * 110.71641 * 87.87151 * 13 11 10 36 36 H 1.08996 * 109.99069 * 263.05132 * 14 13 11 37 37 H 1.08998 * 109.77405 * 141.88462 * 14 13 11 38 38 H 1.07994 * 119.99863 * 0.02562 * 19 18 16 39 39 H 1.08006 * 119.88303 * 180.28594 * 20 19 18 40 40 H 1.07995 * 119.89326 * 179.97438 * 21 20 19 41 41 H 1.09004 * 110.25960 * 263.86880 * 24 23 22 42 42 H 1.09001 * 110.26682 * 25.91680 * 24 23 22 43 43 H 1.07999 * 125.26928 * 162.99897 * 25 24 23 44 44 H 1.08000 * 125.27234 * 179.97438 * 26 25 24 45 45 H 1.08992 * 110.27015 * 334.07868 * 27 23 22 46 46 H 1.09005 * 110.26303 * 96.04083 * 27 23 22 47 47 H 1.07998 * 120.11633 * 179.97438 * 28 22 21 48 48 H 1.08998 * 110.37326 * 94.93698 * 29 15 14 49 49 H 1.09000 * 110.36746 * 217.14768 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0580 -3.6567 0.0027 11 6 1.0638 -4.8197 0.0044 12 1 0.3948 -4.7579 0.8628 13 6 1.8023 -6.1839 -0.0280 14 6 0.7670 -7.1193 -0.6871 15 7 -0.1574 -6.2741 -1.4569 16 6 -1.2173 -6.7119 -2.1649 17 8 -1.8618 -5.9325 -2.8392 18 6 -1.5966 -8.1404 -2.1213 19 6 -0.7692 -9.0654 -1.4816 20 6 -1.1254 -10.3979 -1.4417 21 6 -2.3001 -10.8224 -2.0341 22 6 -3.1307 -9.9096 -2.6734 23 7 -4.3166 -10.3437 -3.2710 24 6 -5.4925 -9.6751 -2.6650 25 6 -6.4718 -9.4815 -3.7995 26 6 -5.8470 -9.6147 -4.9427 27 6 -4.3873 -9.9106 -4.6869 28 6 -2.7817 -8.5683 -2.7190 29 6 0.2634 -4.8678 -1.3210 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0016 32 1 2.6847 -3.7137 0.8928 33 1 2.6847 -3.7153 -0.8872 34 1 2.7074 -6.1182 -0.6316 35 1 2.0375 -6.5191 0.9821 36 1 0.2181 -7.6665 0.0792 37 1 1.2729 -7.8178 -1.3537 38 1 0.1492 -8.7379 -1.0173 39 1 -0.4862 -11.1111 -0.9424 40 1 -2.5734 -11.8666 -2.0000 41 1 -5.9298 -10.3076 -1.8925 42 1 -5.2044 -8.7109 -2.2462 43 1 -7.5241 -9.2670 -3.6852 44 1 -6.3041 -9.5270 -5.9172 45 1 -3.7880 -9.0129 -4.8376 46 1 -4.0419 -10.7092 -5.3436 47 1 -3.4254 -7.8574 -3.2156 48 1 0.8986 -4.5791 -2.1584 49 1 -0.6077 -4.2150 -1.2640 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267062372.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:10 Heat of formation + Delta-G solvation = 52.284742 kcal Electronic energy + Delta-G solvation = -28876.915827 eV Core-core repulsion = 24998.103814 eV Total energy + Delta-G solvation = -3878.812013 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.97891 -41.07434 -39.13481 -38.58070 -36.53525 -34.42317 -33.64685 -32.42443 -31.81142 -30.56727 -29.48478 -29.29747 -27.35450 -25.79765 -24.57913 -24.14954 -23.22981 -21.92517 -21.44482 -20.94604 -20.39890 -19.21661 -18.62530 -17.74395 -17.57442 -16.97774 -16.93690 -16.57523 -16.32535 -15.80193 -15.47256 -15.22720 -15.14709 -14.98989 -14.82957 -14.72395 -14.22923 -14.05320 -13.99412 -13.88446 -13.56896 -13.30116 -13.23199 -13.09686 -12.95463 -12.77845 -12.66356 -12.41824 -12.32403 -12.16744 -12.03388 -11.77248 -11.63043 -11.42100 -11.22265 -10.95748 -10.71083 -10.13414 -9.79557 -9.74293 -9.49852 -9.01770 -7.96336 -5.25789 -0.23380 0.16154 1.15683 1.45553 1.48046 1.56387 1.67907 1.80333 2.54755 2.69346 2.75878 3.25961 3.37815 3.54068 3.59928 3.61258 3.83115 3.83487 3.87119 4.02305 4.15720 4.20163 4.22744 4.27361 4.38132 4.40205 4.44547 4.46732 4.50740 4.56385 4.61710 4.66782 4.75868 4.76387 4.82880 4.91229 4.99806 5.04611 5.12430 5.21082 5.24708 5.28406 5.32222 5.33927 5.35967 5.41119 5.48984 5.70067 5.80418 6.17751 6.25309 6.37565 6.94269 7.31182 8.07963 8.28849 9.27502 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016952 B = 0.002153 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.329296 B =13000.890201 C =14312.042902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.082 4.082 3 Si 0.976 3.024 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.242 4.242 8 H 0.081 0.919 9 N -0.750 5.750 10 C 0.163 3.837 11 C -0.097 4.097 12 H 0.078 0.922 13 C -0.113 4.113 14 C 0.082 3.918 15 N -0.609 5.609 16 C 0.557 3.443 17 O -0.596 6.596 18 C -0.136 4.136 19 C -0.117 4.117 20 C -0.106 4.106 21 C -0.065 4.065 22 C 0.056 3.944 23 N -0.466 5.466 24 C 0.048 3.952 25 C -0.172 4.172 26 C -0.172 4.172 27 C 0.046 3.954 28 C -0.107 4.107 29 C 0.120 3.880 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.039 0.961 33 H 0.026 0.974 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.187 0.813 39 H 0.177 0.823 40 H 0.156 0.844 41 H 0.102 0.898 42 H 0.047 0.953 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.048 0.952 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.058 0.942 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.614 -31.341 -2.920 31.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.273 4.273 3 Si 0.804 3.196 4 H -0.217 1.217 5 H -0.224 1.224 6 H -0.188 1.188 7 C -0.374 4.374 8 H 0.099 0.901 9 N -0.392 5.392 10 C 0.036 3.964 11 C -0.116 4.116 12 H 0.097 0.903 13 C -0.151 4.151 14 C -0.038 4.038 15 N -0.340 5.340 16 C 0.349 3.651 17 O -0.478 6.478 18 C -0.140 4.140 19 C -0.134 4.134 20 C -0.124 4.124 21 C -0.084 4.084 22 C -0.038 4.038 23 N -0.187 5.187 24 C -0.078 4.078 25 C -0.190 4.190 26 C -0.190 4.190 27 C -0.080 4.080 28 C -0.129 4.129 29 C -0.003 4.003 30 H 0.059 0.941 31 H 0.202 0.798 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.112 0.888 35 H 0.136 0.864 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.203 0.797 39 H 0.195 0.805 40 H 0.174 0.826 41 H 0.120 0.880 42 H 0.065 0.935 43 H 0.176 0.824 44 H 0.176 0.824 45 H 0.067 0.933 46 H 0.119 0.881 47 H 0.122 0.878 48 H 0.077 0.923 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.825 -31.476 -3.229 31.872 hybrid contribution -0.594 2.862 -0.542 2.973 sum -4.419 -28.614 -3.771 29.198 Atomic orbital electron populations 1.69842 1.06857 1.26032 1.59735 1.25646 0.96368 1.01439 1.03883 0.85106 0.77831 0.79289 0.77341 1.21659 1.22377 1.18842 1.19682 0.91666 0.85254 1.40817 0.90080 1.42656 1.05600 1.01534 1.89456 1.20796 0.93320 0.83636 0.98622 1.22428 0.97253 0.96408 0.95531 0.90337 1.22777 0.97541 0.90963 1.03845 1.22974 0.90876 0.94053 0.95880 1.48487 1.27640 1.09006 1.48902 1.18656 0.79088 0.88834 0.78569 1.90758 1.54739 1.58720 1.43626 1.19647 0.98001 0.91642 1.04715 1.23090 1.00909 0.93367 0.96045 1.21594 0.96537 0.95564 0.98680 1.21551 0.92746 1.00337 0.93747 1.19113 0.93810 0.90753 1.00142 1.63454 1.00308 1.52185 1.02772 1.22301 0.89852 0.97641 0.98011 1.23784 1.00431 1.00856 0.93973 1.23776 0.94441 1.00741 1.00086 1.22323 0.96116 1.00028 0.89573 1.21624 0.96266 0.96556 0.98413 1.22103 0.97886 0.81844 0.98487 0.94143 0.79803 0.94333 0.95600 0.88850 0.86378 0.87684 0.87204 0.79668 0.80539 0.82641 0.87966 0.93477 0.82356 0.82371 0.93348 0.88083 0.87838 0.92341 0.94303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.93 13.06 21.65 0.28 -61.65 16 2 C -0.08 -4.80 5.50 84.86 0.47 -4.34 16 3 Si 0.98 47.04 29.55 68.60 2.03 49.06 16 4 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 5 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 6 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.24 -13.66 9.99 84.03 0.84 -12.82 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 9 N -0.75 -38.46 5.45 -343.44 -1.87 -40.34 16 10 C 0.16 6.09 5.71 86.38 0.49 6.59 16 11 C -0.10 -2.86 3.10 -9.40 -0.03 -2.89 16 12 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 13 C -0.11 -1.94 6.42 31.78 0.20 -1.73 16 14 C 0.08 1.34 4.86 86.73 0.42 1.76 16 15 N -0.61 -17.58 3.33 -827.39 -2.75 -20.33 16 16 C 0.56 18.82 7.81 86.79 0.68 19.50 16 17 O -0.60 -26.45 16.67 -3.88 -0.06 -26.52 16 18 C -0.14 -3.48 5.87 -20.10 -0.12 -3.59 16 19 C -0.12 -1.83 8.59 22.54 0.19 -1.63 16 20 C -0.11 -1.17 10.02 22.21 0.22 -0.94 16 21 C -0.07 -0.93 9.96 22.45 0.22 -0.71 16 22 C 0.06 1.15 4.91 38.17 0.19 1.33 16 23 N -0.47 -9.04 5.58 -695.55 -3.88 -12.93 16 24 C 0.05 0.89 6.47 85.43 0.55 1.44 16 25 C -0.17 -2.73 10.95 25.82 0.28 -2.45 16 26 C -0.17 -2.74 10.95 25.82 0.28 -2.45 16 27 C 0.05 0.85 6.44 85.43 0.55 1.40 16 28 C -0.11 -2.80 7.23 22.67 0.16 -2.64 16 29 C 0.12 4.22 6.06 86.85 0.53 4.75 16 30 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 31 H 0.37 20.77 7.53 -92.71 -0.70 20.08 16 32 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.03 0.97 8.10 -2.38 -0.02 0.95 16 34 H 0.09 1.44 8.04 -2.39 -0.02 1.42 16 35 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.11 1.23 6.67 -2.39 -0.02 1.21 16 37 H 0.11 1.16 6.80 -2.39 -0.02 1.15 16 38 H 0.19 1.89 2.76 -7.60 -0.02 1.87 16 39 H 0.18 0.50 8.06 -2.91 -0.02 0.48 16 40 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 41 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.05 1.05 6.75 -2.39 -0.02 1.03 16 43 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 44 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 45 H 0.05 1.09 6.29 -2.39 -0.02 1.08 16 46 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 47 H 0.10 3.22 6.64 -2.91 -0.02 3.21 16 48 H 0.06 2.20 8.00 -2.39 -0.02 2.18 16 49 H 0.04 1.69 8.09 -2.39 -0.02 1.67 16 Total: -1.00 -81.59 390.57 0.14 -81.45 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.26 Total: 30.68 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 6.14 Total: 0.57 kcal Atomic # 7 Polarization: -127.02 SS G_CDS: -8.23 Total: -135.25 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.06 Total: -26.52 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.06 kcal Total: -81.59 0.14 -81.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267062372.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.734 kcal (2) G-P(sol) polarization free energy of solvation -81.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds