Wall clock time and date at job start Sat Apr 11 2020 06:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99770 * 2 1 4 4 H 1.48508 * 109.46909 * 239.99831 * 3 2 1 5 5 H 1.48502 * 109.47295 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47265 * 120.00377 * 3 2 1 7 7 C 1.38805 * 120.00362 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00763 * 163.08235 * 7 2 1 9 9 N 1.36939 * 119.99915 * 343.07807 * 7 2 1 10 10 C 1.46922 * 120.63017 * 331.84542 * 9 7 2 11 11 C 1.53190 * 108.78130 * 233.58763 * 10 9 7 12 12 C 1.53045 * 109.30996 * 305.36767 * 11 10 9 13 13 C 1.52998 * 109.46174 * 181.38274 * 12 11 10 14 14 C 1.53001 * 109.47444 * 174.96826 * 13 12 11 15 15 N 1.46494 * 109.47279 * 179.97438 * 14 13 12 16 16 C 1.34773 * 119.99942 * 180.02562 * 15 14 13 17 17 O 1.21596 * 120.00190 * 359.97438 * 16 15 14 18 18 C 1.47497 * 120.00063 * 179.97438 * 16 15 14 19 19 C 1.41202 * 126.37297 * 0.04403 * 18 16 15 20 20 C 1.37998 * 106.86613 * 179.97438 * 19 18 16 21 21 C 1.41385 * 131.98297 * 179.97438 * 20 19 18 22 22 C 1.35739 * 119.33247 * 179.97438 * 21 20 19 23 23 C 1.40831 * 119.71791 * 0.02562 * 22 21 20 24 24 C 1.34537 * 120.58605 * 359.97438 * 23 22 21 25 25 N 1.37444 * 120.73870 * 0.02562 * 24 23 22 26 26 C 1.35130 * 131.27820 * 179.97438 * 25 24 23 27 27 C 1.53034 * 109.52845 * 61.36691 * 12 11 10 28 28 C 1.46925 * 120.63262 * 151.82125 * 9 7 2 29 29 H 0.97002 * 120.00094 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.58652 * 113.79805 * 10 9 7 31 31 H 1.09001 * 109.70640 * 353.44662 * 10 9 7 32 32 H 1.09000 * 109.50339 * 185.41375 * 11 10 9 33 33 H 1.09007 * 109.49836 * 65.31285 * 11 10 9 34 34 H 1.08999 * 109.45577 * 301.35415 * 12 11 10 35 35 H 1.09000 * 109.47196 * 54.97068 * 13 12 11 36 36 H 1.09004 * 109.47277 * 294.97319 * 13 12 11 37 37 H 1.09000 * 109.46726 * 59.99955 * 14 13 12 38 38 H 1.09001 * 109.46786 * 300.00437 * 14 13 12 39 39 H 0.97005 * 120.00039 * 0.02562 * 15 14 13 40 40 H 1.08002 * 126.56259 * 359.97438 * 19 18 16 41 41 H 1.08001 * 120.33473 * 359.72084 * 21 20 19 42 42 H 1.07995 * 120.14150 * 179.97438 * 22 21 20 43 43 H 1.08000 * 119.70846 * 179.97438 * 23 22 21 44 44 H 1.07992 * 119.63163 * 180.02562 * 24 23 22 45 45 H 1.07999 * 125.61798 * 0.02562 * 26 25 24 46 46 H 1.09006 * 109.49888 * 58.58172 * 27 12 11 47 47 H 1.09007 * 109.50103 * 178.67947 * 27 12 11 48 48 H 1.08992 * 109.58801 * 246.19864 * 28 9 7 49 49 H 1.09004 * 109.58593 * 6.48885 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0553 -1.2222 -0.2727 9 7 1.3701 -2.3625 0.3441 10 6 0.2261 -2.3410 1.2657 11 6 0.4973 -3.3210 2.4115 12 6 0.8120 -4.7022 1.8323 13 6 1.0496 -5.6919 2.9745 14 6 1.2400 -7.0973 2.4004 15 7 1.4681 -8.0448 3.4942 16 6 1.6634 -9.3508 3.2246 17 8 1.6497 -9.7427 2.0736 18 6 1.8936 -10.3048 4.3257 19 6 1.9357 -9.9989 5.7036 20 6 2.1741 -11.1838 6.3696 21 6 2.3156 -11.4842 7.7439 22 6 2.5501 -12.7662 8.1236 23 6 2.6494 -13.7764 7.1474 24 6 2.5135 -13.4822 5.8416 25 7 2.2758 -12.1916 5.4333 26 6 2.1071 -11.6631 4.2011 27 6 2.0675 -4.6178 0.9614 28 6 1.8139 -3.6526 -0.2011 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6770 -2.6411 0.7343 31 1 0.0966 -1.3360 1.6675 32 1 -0.3833 -3.3865 3.0505 33 1 1.3470 -2.9699 2.9971 34 1 -0.0281 -5.0418 1.2264 35 1 0.1899 -5.6867 3.6446 36 1 1.9428 -5.4011 3.5274 37 1 2.0997 -7.1026 1.7304 38 1 0.3467 -7.3880 1.8476 39 1 1.4786 -7.7323 4.4124 40 1 1.8062 -9.0243 6.1505 41 1 2.2421 -10.7010 8.4839 42 1 2.6607 -13.0103 9.1697 43 1 2.8364 -14.7962 7.4496 44 1 2.5922 -14.2690 5.1060 45 1 2.1342 -12.2129 3.2718 46 1 2.9023 -4.2543 1.5607 47 1 2.3046 -5.6063 0.5680 48 1 1.0403 -4.0597 -0.8521 49 1 2.7333 -3.5123 -0.7694 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267947528.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:40 Heat of formation + Delta-G solvation = 45.932263 kcal Electronic energy + Delta-G solvation = -28064.771473 eV Core-core repulsion = 24185.683996 eV Total energy + Delta-G solvation = -3879.087478 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.59859 -39.54541 -37.93870 -36.79947 -35.31630 -33.70028 -33.31035 -31.31044 -30.50070 -29.84528 -28.45913 -28.13748 -25.47798 -24.28924 -23.24740 -22.53196 -22.18283 -21.75864 -20.76864 -19.86875 -18.99879 -18.12890 -17.23570 -16.75343 -16.64525 -15.93968 -15.74775 -15.55614 -15.31106 -14.84898 -14.76659 -14.22869 -14.08015 -13.81078 -13.52235 -13.43427 -13.27695 -12.88151 -12.72541 -12.49320 -12.40694 -12.14843 -12.07728 -11.73037 -11.49323 -11.27753 -11.15014 -10.90276 -10.82344 -10.65656 -10.41925 -10.18238 -10.10560 -10.02899 -9.79736 -9.39986 -9.32627 -9.12759 -8.85477 -8.40573 -7.82261 -6.58885 -5.72839 -3.14838 0.30704 0.93053 1.80850 2.20056 3.04290 3.23085 3.39713 3.41814 3.47175 3.48717 4.03851 4.29902 4.35556 4.49996 4.54733 4.62915 4.85777 4.96009 5.04587 5.11105 5.13235 5.33725 5.36897 5.43381 5.45487 5.52924 5.65836 5.68926 5.80283 5.82028 5.85540 5.90462 6.09773 6.11821 6.21160 6.27529 6.30330 6.41161 6.44732 6.48517 6.63475 6.71586 6.78497 6.80864 6.90798 6.94100 7.09707 7.45261 7.49080 7.73100 7.84906 8.20520 8.51953 9.28247 9.92185 10.49555 11.35556 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.031237 B = 0.001605 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.171898 B =17436.275364 C =17829.700812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.171 3.829 11 C -0.134 4.134 12 C -0.075 4.075 13 C -0.125 4.125 14 C 0.118 3.882 15 N -0.722 5.722 16 C 0.584 3.416 17 O -0.545 6.545 18 C -0.169 4.169 19 C -0.164 4.164 20 C 0.027 3.973 21 C -0.076 4.076 22 C -0.135 4.135 23 C -0.136 4.136 24 C 0.042 3.958 25 N -0.342 5.342 26 C 0.020 3.980 27 C -0.130 4.130 28 C 0.144 3.856 29 H 0.253 0.747 30 H 0.016 0.984 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.400 0.600 40 H 0.153 0.847 41 H 0.144 0.856 42 H 0.134 0.866 43 H 0.146 0.854 44 H 0.162 0.838 45 H 0.182 0.818 46 H 0.057 0.943 47 H 0.051 0.949 48 H 0.016 0.984 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.568 -27.693 18.045 33.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.045 3.955 11 C -0.173 4.173 12 C -0.094 4.094 13 C -0.163 4.163 14 C -0.005 4.005 15 N -0.372 5.372 16 C 0.371 3.629 17 O -0.424 6.424 18 C -0.176 4.176 19 C -0.188 4.188 20 C -0.077 4.077 21 C -0.094 4.094 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.076 4.076 25 N -0.006 5.006 26 C -0.114 4.114 27 C -0.169 4.169 28 C 0.018 3.982 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.234 0.766 40 H 0.170 0.830 41 H 0.162 0.838 42 H 0.152 0.848 43 H 0.164 0.836 44 H 0.180 0.820 45 H 0.199 0.801 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.034 0.966 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.483 -28.044 17.157 33.060 hybrid contribution 0.414 0.932 0.492 1.132 sum 3.897 -27.112 17.649 32.585 Atomic orbital electron populations 1.70027 1.05235 1.25480 1.54118 1.25032 0.95269 0.98334 1.01088 0.86383 0.78906 0.83471 0.78092 1.20928 1.21675 1.21110 1.19156 0.92502 0.84918 1.41473 0.91850 1.44042 1.35895 1.01529 1.50074 1.20753 0.88607 0.98095 0.88056 1.22221 0.99873 0.95406 0.99826 1.20969 0.98484 0.94806 0.95125 1.21908 1.01981 0.93116 0.99294 1.21550 1.02076 0.87746 0.89118 1.45866 1.73112 1.07327 1.10928 1.17384 0.76286 0.81769 0.87435 1.90787 1.51609 1.78537 1.21462 1.19591 1.11230 0.93233 0.93537 1.21200 1.08943 0.96880 0.91787 1.18806 1.10945 0.88232 0.89689 1.20690 0.98736 0.97651 0.92361 1.20963 1.01947 0.92525 1.00046 1.20753 1.02656 1.00939 0.91247 1.21705 1.03542 0.84695 0.97661 1.41341 1.45224 1.06699 1.07349 1.22034 1.08926 0.93466 0.87003 1.22122 0.97096 0.98911 0.98773 1.20903 0.97465 0.86961 0.92874 0.93670 0.96583 0.89646 0.93473 0.92780 0.91680 0.91760 0.91561 0.90909 0.91442 0.76620 0.82980 0.83848 0.84793 0.83637 0.82017 0.80088 0.92446 0.93033 0.96590 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 11.19 55.49 0.62 -25.95 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -7.01 9.58 -15.06 -0.14 -7.15 16 8 H 0.06 1.74 7.89 -52.48 -0.41 1.33 16 9 N -0.59 -15.10 2.99 -172.32 -0.52 -15.62 16 10 C 0.17 4.10 5.30 -3.71 -0.02 4.08 16 11 C -0.13 -2.51 5.36 -26.61 -0.14 -2.65 16 12 C -0.07 -1.21 2.15 -90.58 -0.19 -1.41 16 13 C -0.13 -1.57 4.80 -26.73 -0.13 -1.70 16 14 C 0.12 1.51 5.43 -4.04 -0.02 1.48 16 15 N -0.72 -8.22 5.55 -61.36 -0.34 -8.56 16 16 C 0.58 7.77 7.82 -12.49 -0.10 7.67 16 17 O -0.55 -9.21 16.90 5.28 0.09 -9.12 16 18 C -0.17 -1.87 6.12 -105.06 -0.64 -2.51 16 19 C -0.16 -1.49 10.44 -38.54 -0.40 -1.90 16 20 C 0.03 0.24 6.70 -84.01 -0.56 -0.32 16 21 C -0.08 -0.49 10.11 -39.28 -0.40 -0.88 16 22 C -0.13 -0.69 10.07 -39.50 -0.40 -1.09 16 23 C -0.14 -0.63 9.97 -39.91 -0.40 -1.03 16 24 C 0.04 0.25 10.89 -16.34 -0.18 0.07 16 25 N -0.34 -2.96 2.92 -60.42 -0.18 -3.14 16 26 C 0.02 0.19 11.37 -16.16 -0.18 0.01 16 27 C -0.13 -2.27 5.14 -26.61 -0.14 -2.41 16 28 C 0.14 3.11 6.52 -3.71 -0.02 3.08 16 29 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 2.30 6.07 -51.93 -0.31 1.98 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 1.04 8.14 -51.92 -0.42 0.61 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.02 6.53 -51.93 -0.34 0.68 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.40 3.48 7.44 -40.82 -0.30 3.17 16 40 H 0.15 1.01 7.53 -52.49 -0.40 0.61 16 41 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 42 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 43 H 0.15 0.27 8.06 -52.49 -0.42 -0.16 16 44 H 0.16 0.48 8.06 -52.49 -0.42 0.06 16 45 H 0.18 1.53 8.06 -52.49 -0.42 1.11 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.05 0.80 6.50 -51.93 -0.34 0.47 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 LS Contribution 394.92 15.07 5.95 5.95 Total: -1.00 -34.34 394.92 -11.13 -45.47 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.57 Total: 0.75 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -4.16 Total: -6.70 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.41 Total: -53.27 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.34 -11.13 -45.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267947528.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.406 kcal (2) G-P(sol) polarization free energy of solvation -34.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds