Wall clock time and date at job start Sat Apr 11 2020 06:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99770 * 2 1 4 4 H 1.48508 * 109.46909 * 239.99831 * 3 2 1 5 5 H 1.48502 * 109.47295 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47265 * 120.00377 * 3 2 1 7 7 C 1.38805 * 120.00362 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00763 * 163.08235 * 7 2 1 9 9 N 1.36939 * 119.99915 * 343.07807 * 7 2 1 10 10 C 1.46922 * 120.63017 * 331.84542 * 9 7 2 11 11 C 1.53190 * 108.78130 * 233.58763 * 10 9 7 12 12 C 1.53045 * 109.30996 * 305.36767 * 11 10 9 13 13 C 1.52998 * 109.46174 * 181.38274 * 12 11 10 14 14 C 1.53001 * 109.47444 * 174.96826 * 13 12 11 15 15 N 1.46494 * 109.47279 * 179.97438 * 14 13 12 16 16 C 1.34773 * 119.99942 * 180.02562 * 15 14 13 17 17 O 1.21596 * 120.00190 * 359.97438 * 16 15 14 18 18 C 1.47497 * 120.00063 * 179.97438 * 16 15 14 19 19 C 1.41202 * 126.37297 * 0.04403 * 18 16 15 20 20 C 1.37998 * 106.86613 * 179.97438 * 19 18 16 21 21 C 1.41385 * 131.98297 * 179.97438 * 20 19 18 22 22 C 1.35739 * 119.33247 * 179.97438 * 21 20 19 23 23 C 1.40831 * 119.71791 * 0.02562 * 22 21 20 24 24 C 1.34537 * 120.58605 * 359.97438 * 23 22 21 25 25 N 1.37444 * 120.73870 * 0.02562 * 24 23 22 26 26 C 1.35130 * 131.27820 * 179.97438 * 25 24 23 27 27 C 1.53034 * 109.52845 * 61.36691 * 12 11 10 28 28 C 1.46925 * 120.63262 * 151.82125 * 9 7 2 29 29 H 0.97002 * 120.00094 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.58652 * 113.79805 * 10 9 7 31 31 H 1.09001 * 109.70640 * 353.44662 * 10 9 7 32 32 H 1.09000 * 109.50339 * 185.41375 * 11 10 9 33 33 H 1.09007 * 109.49836 * 65.31285 * 11 10 9 34 34 H 1.08999 * 109.45577 * 301.35415 * 12 11 10 35 35 H 1.09000 * 109.47196 * 54.97068 * 13 12 11 36 36 H 1.09004 * 109.47277 * 294.97319 * 13 12 11 37 37 H 1.09000 * 109.46726 * 59.99955 * 14 13 12 38 38 H 1.09001 * 109.46786 * 300.00437 * 14 13 12 39 39 H 0.97005 * 120.00039 * 0.02562 * 15 14 13 40 40 H 1.08002 * 126.56259 * 359.97438 * 19 18 16 41 41 H 1.08001 * 120.33473 * 359.72084 * 21 20 19 42 42 H 1.07995 * 120.14150 * 179.97438 * 22 21 20 43 43 H 1.08000 * 119.70846 * 179.97438 * 23 22 21 44 44 H 1.07992 * 119.63163 * 180.02562 * 24 23 22 45 45 H 1.07999 * 125.61798 * 0.02562 * 26 25 24 46 46 H 1.09006 * 109.49888 * 58.58172 * 27 12 11 47 47 H 1.09007 * 109.50103 * 178.67947 * 27 12 11 48 48 H 1.08992 * 109.58801 * 246.19864 * 28 9 7 49 49 H 1.09004 * 109.58593 * 6.48885 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0553 -1.2222 -0.2727 9 7 1.3701 -2.3625 0.3441 10 6 0.2261 -2.3410 1.2657 11 6 0.4973 -3.3210 2.4115 12 6 0.8120 -4.7022 1.8323 13 6 1.0496 -5.6919 2.9745 14 6 1.2400 -7.0973 2.4004 15 7 1.4681 -8.0448 3.4942 16 6 1.6634 -9.3508 3.2246 17 8 1.6497 -9.7427 2.0736 18 6 1.8936 -10.3048 4.3257 19 6 1.9357 -9.9989 5.7036 20 6 2.1741 -11.1838 6.3696 21 6 2.3156 -11.4842 7.7439 22 6 2.5501 -12.7662 8.1236 23 6 2.6494 -13.7764 7.1474 24 6 2.5135 -13.4822 5.8416 25 7 2.2758 -12.1916 5.4333 26 6 2.1071 -11.6631 4.2011 27 6 2.0675 -4.6178 0.9614 28 6 1.8139 -3.6526 -0.2011 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6770 -2.6411 0.7343 31 1 0.0966 -1.3360 1.6675 32 1 -0.3833 -3.3865 3.0505 33 1 1.3470 -2.9699 2.9971 34 1 -0.0281 -5.0418 1.2264 35 1 0.1899 -5.6867 3.6446 36 1 1.9428 -5.4011 3.5274 37 1 2.0997 -7.1026 1.7304 38 1 0.3467 -7.3880 1.8476 39 1 1.4786 -7.7323 4.4124 40 1 1.8062 -9.0243 6.1505 41 1 2.2421 -10.7010 8.4839 42 1 2.6607 -13.0103 9.1697 43 1 2.8364 -14.7962 7.4496 44 1 2.5922 -14.2690 5.1060 45 1 2.1342 -12.2129 3.2718 46 1 2.9023 -4.2543 1.5607 47 1 2.3046 -5.6063 0.5680 48 1 1.0403 -4.0597 -0.8521 49 1 2.7333 -3.5123 -0.7694 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267947528.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:39 Heat of formation + Delta-G solvation = 26.539774 kcal Electronic energy + Delta-G solvation = -28065.612395 eV Core-core repulsion = 24185.683996 eV Total energy + Delta-G solvation = -3879.928399 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.17323 -40.55493 -39.46404 -37.33544 -36.65709 -35.07755 -34.03698 -33.02046 -31.64505 -31.13935 -29.82994 -28.69234 -27.01659 -25.34160 -24.38523 -23.72203 -23.10828 -22.73467 -22.10801 -20.94817 -20.48747 -18.72894 -18.68325 -17.84710 -17.36518 -16.83473 -16.70575 -16.59402 -16.21084 -16.13491 -15.68683 -15.30698 -15.27899 -15.19221 -14.91697 -14.82060 -14.37199 -14.28980 -13.95568 -13.80605 -13.43027 -13.02343 -12.91288 -12.88553 -12.77199 -12.51852 -12.43688 -12.29600 -12.20449 -12.11350 -11.92469 -11.79074 -11.51891 -11.43640 -11.19840 -10.96772 -10.92679 -10.50905 -10.11768 -9.55472 -8.64749 -8.35367 -7.85504 -5.31178 -0.17618 0.38387 1.07943 1.46967 1.49143 1.56329 1.63473 2.34039 2.48039 2.52496 2.61127 3.28266 3.60362 3.71592 3.75642 3.86694 3.90777 3.95644 4.04840 4.15413 4.21544 4.30091 4.33022 4.43781 4.48362 4.57444 4.61363 4.69108 4.77483 4.79884 4.88016 4.92124 4.93289 5.05513 5.08264 5.13640 5.25242 5.29457 5.32424 5.38228 5.42396 5.42666 5.46473 5.49203 5.58117 5.68365 5.69402 5.83146 5.89710 6.26742 6.41205 6.60478 7.17246 7.26093 7.89428 8.41233 9.20331 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.031237 B = 0.001605 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.171898 B =17436.275364 C =17829.700812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.968 3.032 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.265 4.265 8 H 0.064 0.936 9 N -0.611 5.611 10 C 0.174 3.826 11 C -0.120 4.120 12 C -0.070 4.070 13 C -0.107 4.107 14 C 0.124 3.876 15 N -0.709 5.709 16 C 0.582 3.418 17 O -0.591 6.591 18 C -0.192 4.192 19 C -0.174 4.174 20 C 0.017 3.983 21 C -0.095 4.095 22 C -0.128 4.128 23 C -0.129 4.129 24 C 0.019 3.981 25 N -0.344 5.344 26 C 0.002 3.998 27 C -0.118 4.118 28 C 0.138 3.862 29 H 0.250 0.750 30 H -0.009 1.009 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.415 0.585 40 H 0.172 0.828 41 H 0.164 0.836 42 H 0.162 0.838 43 H 0.179 0.821 44 H 0.185 0.815 45 H 0.185 0.815 46 H 0.056 0.944 47 H 0.073 0.927 48 H 0.008 0.992 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 -29.633 21.112 36.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.796 3.204 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.395 4.395 8 H 0.081 0.919 9 N -0.335 5.335 10 C 0.048 3.952 11 C -0.159 4.159 12 C -0.089 4.089 13 C -0.145 4.145 14 C 0.000 4.000 15 N -0.360 5.360 16 C 0.371 3.629 17 O -0.473 6.473 18 C -0.200 4.200 19 C -0.197 4.197 20 C -0.088 4.088 21 C -0.113 4.113 22 C -0.148 4.148 23 C -0.149 4.149 24 C -0.098 4.098 25 N -0.008 5.008 26 C -0.133 4.133 27 C -0.156 4.156 28 C 0.012 3.988 29 H 0.059 0.941 30 H 0.010 0.990 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.252 0.748 40 H 0.190 0.810 41 H 0.181 0.819 42 H 0.180 0.820 43 H 0.196 0.804 44 H 0.203 0.797 45 H 0.202 0.798 46 H 0.075 0.925 47 H 0.092 0.908 48 H 0.026 0.974 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.604 -30.003 20.265 36.497 hybrid contribution 0.082 1.389 -0.405 1.450 sum 4.685 -28.613 19.860 35.144 Atomic orbital electron populations 1.70190 1.06677 1.25869 1.55445 1.25808 0.96062 1.01508 1.01297 0.85337 0.77568 0.79179 0.78331 1.20240 1.21909 1.20313 1.19495 0.92782 0.86214 1.41047 0.91865 1.44327 1.36036 1.02230 1.50884 1.20614 0.87512 0.97766 0.89264 1.22018 1.00873 0.95202 0.97822 1.20881 0.97578 0.94348 0.96130 1.21698 1.03486 0.91470 0.97866 1.21371 1.01113 0.88136 0.89351 1.45701 1.72261 1.06623 1.11433 1.17746 0.75396 0.82398 0.87368 1.90750 1.53921 1.79338 1.23329 1.19487 1.13348 0.93397 0.93773 1.21426 1.09294 0.98129 0.90883 1.19246 1.10486 0.88239 0.90842 1.21012 0.99633 0.99096 0.91583 1.21434 0.99708 0.92030 1.01650 1.21263 1.00518 1.02496 0.90574 1.22321 1.04164 0.84221 0.99140 1.41514 1.44663 1.07747 1.06841 1.22107 1.09814 0.93514 0.87841 1.21977 0.97715 0.98647 0.97307 1.21075 0.96843 0.86361 0.94494 0.94129 0.99047 0.93029 0.91110 0.92853 0.92255 0.89709 0.90313 0.92116 0.92466 0.74843 0.81037 0.81888 0.82005 0.80400 0.79747 0.79825 0.92480 0.90811 0.97373 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.66 11.19 21.65 0.24 -56.41 16 2 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 3 Si 0.97 45.75 29.59 68.60 2.03 47.78 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 7 C -0.27 -15.08 9.58 84.03 0.81 -14.27 16 8 H 0.06 3.51 7.89 -2.91 -0.02 3.49 16 9 N -0.61 -31.80 2.99 -699.10 -2.09 -33.89 16 10 C 0.17 8.57 5.30 86.36 0.46 9.03 16 11 C -0.12 -4.37 5.36 30.67 0.16 -4.21 16 12 C -0.07 -2.17 2.15 -10.77 -0.02 -2.20 16 13 C -0.11 -2.42 4.80 30.59 0.15 -2.27 16 14 C 0.12 3.00 5.43 86.38 0.47 3.47 16 15 N -0.71 -15.33 5.55 -466.32 -2.59 -17.92 16 16 C 0.58 15.58 7.82 86.68 0.68 16.26 16 17 O -0.59 -20.59 16.90 -4.02 -0.07 -20.65 16 18 C -0.19 -4.28 6.12 -20.15 -0.12 -4.40 16 19 C -0.17 -3.00 10.44 22.94 0.24 -2.76 16 20 C 0.02 0.27 6.70 38.90 0.26 0.53 16 21 C -0.09 -0.98 10.11 22.47 0.23 -0.75 16 22 C -0.13 -0.86 10.07 22.32 0.22 -0.64 16 23 C -0.13 -0.77 9.97 22.06 0.22 -0.55 16 24 C 0.02 0.18 10.89 82.97 0.90 1.08 16 25 N -0.34 -5.63 2.92 -345.07 -1.01 -6.64 16 26 C 0.00 0.03 11.37 84.14 0.96 0.99 16 27 C -0.12 -3.99 5.14 30.67 0.16 -3.83 16 28 C 0.14 5.99 6.52 86.37 0.56 6.56 16 29 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 30 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 31 H 0.05 2.87 6.07 -2.39 -0.01 2.86 16 32 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.06 1.64 6.53 -2.39 -0.02 1.62 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.41 6.36 7.44 -92.70 -0.69 5.67 16 40 H 0.17 1.98 7.53 -2.91 -0.02 1.96 16 41 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 42 H 0.16 0.16 8.06 -2.91 -0.02 0.14 16 43 H 0.18 -0.14 8.06 -2.91 -0.02 -0.17 16 44 H 0.19 0.72 8.06 -2.91 -0.02 0.70 16 45 H 0.18 3.31 8.06 -2.91 -0.02 3.29 16 46 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 47 H 0.07 2.20 6.50 -2.38 -0.02 2.18 16 48 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 49 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 Total: -1.00 -77.63 394.92 3.52 -74.11 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.26 Total: 14.13 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 6.74 Total: -0.50 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -5.44 Total: -114.86 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.07 Total: -20.65 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -77.63 3.52 -74.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267947528.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.648 kcal (2) G-P(sol) polarization free energy of solvation -77.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds