Wall clock time and date at job start Sat Apr 11 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86804 * 119.99573 * 2 1 4 4 H 1.48497 * 109.47096 * 270.00114 * 3 2 1 5 5 H 1.48494 * 109.47237 * 30.00094 * 3 2 1 6 6 H 1.48500 * 109.47079 * 149.99991 * 3 2 1 7 7 C 1.38949 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99887 * 359.97438 * 7 2 1 9 9 N 1.37101 * 119.99880 * 179.97438 * 7 2 1 10 10 C 1.34775 * 119.99767 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99972 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99998 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47258 * 184.47121 * 12 10 9 14 14 C 1.46904 * 110.99951 * 283.93902 * 13 12 10 15 15 C 1.53002 * 109.46893 * 169.99907 * 14 13 12 16 16 N 1.46503 * 109.46763 * 180.02562 * 15 14 13 17 17 C 1.34776 * 119.99771 * 179.97438 * 16 15 14 18 18 O 1.21283 * 120.00057 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00112 * 179.97438 * 17 16 15 20 20 C 1.52993 * 112.85212 * 309.67525 * 19 17 16 21 21 F 1.39900 * 109.47386 * 168.79812 * 20 19 17 22 22 C 1.53789 * 113.68440 * 80.93951 * 19 17 16 23 23 C 1.53783 * 87.07960 * 89.12863 * 22 19 17 24 24 C 1.53781 * 87.08313 * 25.43063 * 23 22 19 25 25 C 1.46898 * 110.99968 * 159.98912 * 13 12 10 26 26 C 1.53001 * 117.50217 * 11.81854 * 25 13 12 27 27 C 1.52998 * 117.49890 * 303.15575 * 25 13 12 28 28 H 0.96996 * 120.00244 * 359.97438 * 1 2 3 29 29 H 0.96993 * 119.99944 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47569 * 64.47184 * 12 10 9 31 31 H 1.09002 * 109.47376 * 304.46958 * 12 10 9 32 32 H 1.09002 * 109.46922 * 50.00512 * 14 13 12 33 33 H 1.08995 * 109.47069 * 289.99841 * 14 13 12 34 34 H 1.08993 * 109.47087 * 60.00458 * 15 14 13 35 35 H 1.09002 * 109.47138 * 300.00214 * 15 14 13 36 36 H 0.96991 * 120.00282 * 0.02562 * 16 15 14 37 37 H 1.09003 * 109.47363 * 48.80116 * 20 19 17 38 38 H 1.09002 * 109.47043 * 288.80161 * 20 19 17 39 39 H 1.08998 * 113.60891 * 203.67547 * 22 19 17 40 40 H 1.08999 * 113.61541 * 334.57994 * 22 19 17 41 41 H 1.08995 * 113.61575 * 270.88224 * 23 22 19 42 42 H 1.08998 * 113.61350 * 139.97454 * 23 22 19 43 43 H 1.09005 * 113.61845 * 220.01932 * 24 23 22 44 44 H 1.09002 * 113.61914 * 89.11070 * 24 23 22 45 45 H 1.09000 * 115.54914 * 157.48741 * 25 13 12 46 46 H 1.08999 * 117.49742 * 359.97438 * 26 25 13 47 47 H 1.08997 * 117.49940 * 145.02310 * 26 25 13 48 48 H 1.09007 * 117.50182 * 214.98115 * 27 25 13 49 49 H 1.09001 * 117.50269 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4404 0.7000 7 6 2.0090 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3800 -1.2032 -0.0011 10 6 4.0539 -2.3703 -0.0011 11 8 3.4474 -3.4208 -0.0001 12 6 5.5608 -2.3703 -0.0011 13 7 6.0506 -3.7510 -0.1090 14 6 5.9146 -4.4594 1.1707 15 6 6.1960 -5.9487 0.9616 16 7 6.0598 -6.6553 2.2378 17 6 6.2627 -7.9864 2.2960 18 8 6.5584 -8.5992 1.2921 19 6 6.1232 -8.7131 3.6088 20 6 6.9156 -8.0544 4.7397 21 9 6.5413 -8.6210 5.9628 22 6 4.6673 -9.0369 3.9840 23 6 4.8444 -10.3552 3.2123 24 6 6.3498 -10.2303 3.5001 25 6 7.4410 -3.7809 -0.5821 26 6 8.2076 -2.4571 -0.6064 27 6 7.7477 -3.0998 -1.9174 28 1 -0.4850 0.8400 0.0004 29 1 3.8649 -0.3631 -0.0007 30 1 5.9242 -1.9274 0.9262 31 1 5.9242 -1.7886 -0.8483 32 1 4.9013 -4.3311 1.5511 33 1 6.6266 -4.0524 1.8887 34 1 7.2093 -6.0771 0.5812 35 1 5.4840 -6.3557 0.2435 36 1 5.8229 -6.1652 3.0406 37 1 6.7057 -6.9849 4.7554 38 1 7.9816 -8.2131 4.5767 39 1 4.5127 -9.1747 5.0541 40 1 3.9398 -8.3616 3.5336 41 1 4.5944 -10.2787 2.1542 42 1 4.3767 -11.2116 3.6980 43 1 6.9806 -10.5184 2.6592 44 1 6.6551 -10.6943 4.4380 45 1 8.0018 -4.6828 -0.3366 46 1 7.6802 -1.5638 -0.2718 47 1 9.2728 -2.4881 -0.3774 48 1 8.5106 -3.5534 -2.5502 49 1 6.9177 -2.6299 -2.4451 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481185753.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:18 Heat of formation + Delta-G solvation = -57.171678 kcal Electronic energy + Delta-G solvation = -30135.782287 eV Core-core repulsion = 25821.454662 eV Total energy + Delta-G solvation = -4314.327625 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.07452 -40.78650 -39.51524 -37.81396 -37.53805 -35.43580 -34.11720 -33.30798 -31.71683 -30.42160 -29.03507 -26.67385 -25.94317 -24.34750 -24.01972 -22.91722 -22.40151 -21.60793 -20.34702 -19.48041 -19.10297 -18.21924 -17.37429 -16.87450 -16.70871 -16.37707 -16.04046 -15.72042 -15.63414 -15.25471 -15.09492 -14.82513 -14.62138 -14.28189 -13.95659 -13.69119 -13.41127 -13.17014 -12.90922 -12.76499 -12.67141 -12.56511 -12.45415 -12.27803 -11.95834 -11.56566 -11.46772 -11.38710 -11.25978 -11.21127 -11.12166 -10.77872 -10.63177 -10.58830 -10.55707 -10.38573 -10.00978 -9.99422 -9.59139 -9.19852 -8.60997 -8.21473 -7.97886 -6.34211 -3.85843 2.33950 2.79177 2.98391 3.03612 3.12081 3.61583 3.70184 3.86758 3.92089 4.06886 4.09381 4.23338 4.31421 4.53814 4.64420 4.67911 4.70040 4.80403 4.84568 4.91262 5.05335 5.09575 5.12023 5.19071 5.22398 5.41726 5.42472 5.48034 5.51308 5.55980 5.59207 5.67936 5.76750 5.79471 5.82758 5.85310 5.92278 6.00737 6.04427 6.08776 6.12454 6.24470 6.97252 7.13747 7.27238 7.54505 7.99267 8.10673 8.56463 8.91915 9.38816 9.79215 10.78881 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.002555 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.082492 B =10957.441670 C =12347.326431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.451 3.549 11 O -0.557 6.557 12 C 0.039 3.961 13 N -0.477 5.477 14 C 0.050 3.950 15 C 0.126 3.874 16 N -0.723 5.723 17 C 0.542 3.458 18 O -0.528 6.528 19 C -0.148 4.148 20 C 0.081 3.919 21 F -0.207 7.207 22 C -0.122 4.122 23 C -0.139 4.139 24 C -0.114 4.114 25 C 0.020 3.980 26 C -0.225 4.225 27 C -0.171 4.171 28 H 0.273 0.727 29 H 0.369 0.631 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.035 0.965 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.400 0.600 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.122 0.878 46 H 0.099 0.901 47 H 0.092 0.908 48 H 0.097 0.903 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.454 -11.071 8.081 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.237 3.763 11 O -0.438 6.438 12 C -0.092 4.092 13 N -0.198 5.198 14 C -0.078 4.078 15 C 0.002 3.998 16 N -0.375 5.375 17 C 0.327 3.673 18 O -0.403 6.403 19 C -0.151 4.151 20 C 0.026 3.974 21 F -0.188 7.188 22 C -0.159 4.159 23 C -0.176 4.176 24 C -0.152 4.152 25 C -0.090 4.090 26 C -0.265 4.265 27 C -0.209 4.209 28 H 0.084 0.916 29 H 0.202 0.798 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.234 0.766 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.109 0.891 45 H 0.139 0.861 46 H 0.117 0.883 47 H 0.110 0.890 48 H 0.115 0.885 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 17.713 -12.364 7.017 22.712 hybrid contribution 0.947 2.320 0.939 2.675 sum 18.660 -10.044 7.956 22.635 Atomic orbital electron populations 1.69617 1.05635 1.27510 1.49321 1.25034 0.95476 0.97944 0.97672 0.86688 0.79724 0.84132 0.78924 1.19592 1.20179 1.19573 1.19415 0.79158 0.96612 1.48103 0.86258 1.42203 1.07538 1.06080 1.67262 1.19631 0.87935 0.84621 0.84148 1.90563 1.69273 1.30764 1.53238 1.22027 0.95743 0.89700 1.01759 1.61201 1.16228 1.14301 1.28120 1.22256 1.03155 0.92390 0.90034 1.21345 1.02111 0.91267 0.85058 1.45909 1.71244 1.07913 1.12429 1.19528 0.76712 0.81787 0.89276 1.90715 1.46887 1.66622 1.36124 1.22710 1.00433 0.98250 0.93756 1.21694 0.99537 0.97234 0.78911 1.92766 1.93243 1.87202 1.45594 1.22961 0.92639 0.98272 1.02064 1.22812 0.96083 0.97548 1.01160 1.22837 0.98151 0.91208 1.02985 1.22804 0.89037 0.95938 1.01205 1.23631 1.00928 0.98614 1.03282 1.23094 1.03170 1.03801 0.90820 0.91590 0.79798 0.92615 0.88832 0.88219 0.94702 0.91622 0.89839 0.76593 0.90387 0.89948 0.88150 0.90480 0.89533 0.90859 0.89706 0.89085 0.86073 0.88298 0.88952 0.88451 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.41 13.96 55.50 0.77 -24.63 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 18.97 27.74 -169.99 -4.71 14.25 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.26 6.52 56.52 0.37 -4.90 16 7 C -0.30 -8.41 10.16 -14.93 -0.15 -8.56 16 8 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 9 N -0.59 -13.61 5.09 -10.96 -0.06 -13.66 16 10 C 0.45 9.79 7.52 -10.99 -0.08 9.71 16 11 O -0.56 -14.27 14.62 5.54 0.08 -14.19 16 12 C 0.04 0.61 4.12 -4.98 -0.02 0.59 16 13 N -0.48 -7.01 4.31 -228.09 -0.98 -8.00 16 14 C 0.05 0.66 4.68 -3.82 -0.02 0.64 16 15 C 0.13 1.58 5.67 -4.04 -0.02 1.55 16 16 N -0.72 -7.64 5.44 -60.29 -0.33 -7.97 16 17 C 0.54 6.34 6.64 -10.99 -0.07 6.26 16 18 O -0.53 -8.10 15.83 5.56 0.09 -8.01 16 19 C -0.15 -1.34 1.20 -154.85 -0.19 -1.52 16 20 C 0.08 0.59 7.02 37.15 0.26 0.85 16 21 F -0.21 -1.84 15.79 2.25 0.04 -1.80 16 22 C -0.12 -1.08 7.10 -25.91 -0.18 -1.27 16 23 C -0.14 -1.28 7.75 -25.92 -0.20 -1.48 16 24 C -0.11 -1.02 6.94 -25.92 -0.18 -1.20 16 25 C 0.02 0.23 5.83 -67.71 -0.39 -0.17 16 26 C -0.23 -2.27 9.57 -26.69 -0.26 -2.52 16 27 C -0.17 -1.87 9.90 -26.69 -0.26 -2.13 16 28 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.37 7.46 5.76 -40.82 -0.24 7.22 16 30 H 0.06 0.77 7.82 -51.93 -0.41 0.36 16 31 H 0.09 1.33 5.52 -51.93 -0.29 1.04 16 32 H 0.10 1.60 6.60 -51.93 -0.34 1.26 16 33 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 34 H 0.07 0.79 6.40 -51.93 -0.33 0.45 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.40 3.31 7.45 -40.82 -0.30 3.00 16 37 H 0.08 0.44 7.08 -51.93 -0.37 0.07 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.82 7.13 -51.93 -0.37 0.45 16 40 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.86 7.41 -51.93 -0.38 0.48 16 44 H 0.09 0.70 7.88 -51.93 -0.41 0.29 16 45 H 0.12 1.27 6.34 -51.93 -0.33 0.94 16 46 H 0.10 1.02 6.06 -51.93 -0.31 0.71 16 47 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.10 1.22 7.41 -51.93 -0.38 0.83 16 LS Contribution 392.74 15.07 5.92 5.92 Total: -1.00 -33.50 392.74 -8.45 -41.95 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -7.40 Total: 14.36 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -1.87 Total: 1.78 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.59 Total: -54.26 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: 0.17 Total: -22.20 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.71 Total: 14.25 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.50 -8.45 -41.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481185753.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.217 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds