Wall clock time and date at job start Sat Apr 11 2020 06:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86804 * 119.99573 * 2 1 4 4 H 1.48497 * 109.47096 * 270.00114 * 3 2 1 5 5 H 1.48494 * 109.47237 * 30.00094 * 3 2 1 6 6 H 1.48500 * 109.47079 * 149.99991 * 3 2 1 7 7 C 1.38949 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99887 * 359.97438 * 7 2 1 9 9 N 1.37101 * 119.99880 * 179.97438 * 7 2 1 10 10 C 1.34775 * 119.99767 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99972 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99998 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47258 * 184.47121 * 12 10 9 14 14 C 1.46904 * 110.99951 * 283.93902 * 13 12 10 15 15 C 1.53002 * 109.46893 * 169.99907 * 14 13 12 16 16 N 1.46503 * 109.46763 * 180.02562 * 15 14 13 17 17 C 1.34776 * 119.99771 * 179.97438 * 16 15 14 18 18 O 1.21283 * 120.00057 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00112 * 179.97438 * 17 16 15 20 20 C 1.52993 * 112.85212 * 309.67525 * 19 17 16 21 21 F 1.39900 * 109.47386 * 168.79812 * 20 19 17 22 22 C 1.53789 * 113.68440 * 80.93951 * 19 17 16 23 23 C 1.53783 * 87.07960 * 89.12863 * 22 19 17 24 24 C 1.53781 * 87.08313 * 25.43063 * 23 22 19 25 25 C 1.46898 * 110.99968 * 159.98912 * 13 12 10 26 26 C 1.53001 * 117.50217 * 11.81854 * 25 13 12 27 27 C 1.52998 * 117.49890 * 303.15575 * 25 13 12 28 28 H 0.96996 * 120.00244 * 359.97438 * 1 2 3 29 29 H 0.96993 * 119.99944 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47569 * 64.47184 * 12 10 9 31 31 H 1.09002 * 109.47376 * 304.46958 * 12 10 9 32 32 H 1.09002 * 109.46922 * 50.00512 * 14 13 12 33 33 H 1.08995 * 109.47069 * 289.99841 * 14 13 12 34 34 H 1.08993 * 109.47087 * 60.00458 * 15 14 13 35 35 H 1.09002 * 109.47138 * 300.00214 * 15 14 13 36 36 H 0.96991 * 120.00282 * 0.02562 * 16 15 14 37 37 H 1.09003 * 109.47363 * 48.80116 * 20 19 17 38 38 H 1.09002 * 109.47043 * 288.80161 * 20 19 17 39 39 H 1.08998 * 113.60891 * 203.67547 * 22 19 17 40 40 H 1.08999 * 113.61541 * 334.57994 * 22 19 17 41 41 H 1.08995 * 113.61575 * 270.88224 * 23 22 19 42 42 H 1.08998 * 113.61350 * 139.97454 * 23 22 19 43 43 H 1.09005 * 113.61845 * 220.01932 * 24 23 22 44 44 H 1.09002 * 113.61914 * 89.11070 * 24 23 22 45 45 H 1.09000 * 115.54914 * 157.48741 * 25 13 12 46 46 H 1.08999 * 117.49742 * 359.97438 * 26 25 13 47 47 H 1.08997 * 117.49940 * 145.02310 * 26 25 13 48 48 H 1.09007 * 117.50182 * 214.98115 * 27 25 13 49 49 H 1.09001 * 117.50269 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4404 0.7000 7 6 2.0090 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3800 -1.2032 -0.0011 10 6 4.0539 -2.3703 -0.0011 11 8 3.4474 -3.4208 -0.0001 12 6 5.5608 -2.3703 -0.0011 13 7 6.0506 -3.7510 -0.1090 14 6 5.9146 -4.4594 1.1707 15 6 6.1960 -5.9487 0.9616 16 7 6.0598 -6.6553 2.2378 17 6 6.2627 -7.9864 2.2960 18 8 6.5584 -8.5992 1.2921 19 6 6.1232 -8.7131 3.6088 20 6 6.9156 -8.0544 4.7397 21 9 6.5413 -8.6210 5.9628 22 6 4.6673 -9.0369 3.9840 23 6 4.8444 -10.3552 3.2123 24 6 6.3498 -10.2303 3.5001 25 6 7.4410 -3.7809 -0.5821 26 6 8.2076 -2.4571 -0.6064 27 6 7.7477 -3.0998 -1.9174 28 1 -0.4850 0.8400 0.0004 29 1 3.8649 -0.3631 -0.0007 30 1 5.9242 -1.9274 0.9262 31 1 5.9242 -1.7886 -0.8483 32 1 4.9013 -4.3311 1.5511 33 1 6.6266 -4.0524 1.8887 34 1 7.2093 -6.0771 0.5812 35 1 5.4840 -6.3557 0.2435 36 1 5.8229 -6.1652 3.0406 37 1 6.7057 -6.9849 4.7554 38 1 7.9816 -8.2131 4.5767 39 1 4.5127 -9.1747 5.0541 40 1 3.9398 -8.3616 3.5336 41 1 4.5944 -10.2787 2.1542 42 1 4.3767 -11.2116 3.6980 43 1 6.9806 -10.5184 2.6592 44 1 6.6551 -10.6943 4.4380 45 1 8.0018 -4.6828 -0.3366 46 1 7.6802 -1.5638 -0.2718 47 1 9.2728 -2.4881 -0.3774 48 1 8.5106 -3.5534 -2.5502 49 1 6.9177 -2.6299 -2.4451 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481185753.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:17 Heat of formation + Delta-G solvation = -82.294006 kcal Electronic energy + Delta-G solvation = -30136.871672 eV Core-core repulsion = 25821.454662 eV Total energy + Delta-G solvation = -4315.417011 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.70228 -41.68532 -40.81422 -39.25401 -38.46796 -36.45753 -35.98408 -34.42325 -33.74226 -31.38785 -30.02060 -28.01392 -26.71317 -25.96696 -24.90013 -23.85773 -23.20448 -22.52428 -21.66528 -20.97538 -20.34504 -19.74907 -18.29565 -18.07471 -17.60004 -17.16868 -16.96788 -16.72827 -16.67363 -16.59244 -16.27170 -15.88137 -15.77386 -15.55451 -15.30250 -14.83251 -14.59087 -14.46795 -14.38327 -14.04860 -13.64545 -13.56930 -13.39792 -13.33649 -13.17562 -13.01865 -12.56403 -12.40116 -12.34999 -12.24345 -12.02897 -12.00099 -11.98118 -11.71970 -11.48507 -11.31011 -11.25551 -11.21476 -10.96298 -10.36348 -10.23559 -10.19935 -9.05990 -8.40400 -6.01103 1.29634 1.35874 1.40090 1.44334 1.84623 1.97661 2.23349 2.56783 2.93350 3.15134 3.16426 3.29112 3.37732 3.51248 3.58318 3.69942 3.80300 3.95529 4.02697 4.06880 4.08597 4.14459 4.21209 4.26141 4.33133 4.37993 4.38970 4.49045 4.56274 4.73167 4.77370 4.82615 4.85229 4.92492 4.94247 4.98583 5.01400 5.11670 5.13024 5.27827 5.29559 5.36946 5.53371 5.86584 5.99284 6.15098 6.38833 6.60589 6.89784 7.07624 7.41052 7.98568 8.77334 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.002555 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.082492 B =10957.441670 C =12347.326431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.963 3.037 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.229 1.229 7 C -0.325 4.325 8 H 0.055 0.945 9 N -0.593 5.593 10 C 0.451 3.549 11 O -0.604 6.604 12 C 0.054 3.946 13 N -0.506 5.506 14 C 0.058 3.942 15 C 0.137 3.863 16 N -0.713 5.713 17 C 0.541 3.459 18 O -0.569 6.569 19 C -0.143 4.143 20 C 0.083 3.917 21 F -0.214 7.214 22 C -0.118 4.118 23 C -0.144 4.144 24 C -0.110 4.110 25 C 0.007 3.993 26 C -0.203 4.203 27 C -0.179 4.179 28 H 0.278 0.722 29 H 0.389 0.611 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.413 0.587 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.114 0.886 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.110 0.890 45 H 0.133 0.867 46 H 0.102 0.898 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.419 -9.014 9.526 25.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.214 4.214 3 Si 0.783 3.217 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.152 1.152 7 C -0.454 4.454 8 H 0.073 0.927 9 N -0.235 5.235 10 C 0.239 3.761 11 O -0.488 6.488 12 C -0.077 4.077 13 N -0.229 5.229 14 C -0.070 4.070 15 C 0.013 3.987 16 N -0.365 5.365 17 C 0.328 3.672 18 O -0.448 6.448 19 C -0.147 4.147 20 C 0.028 3.972 21 F -0.195 7.195 22 C -0.156 4.156 23 C -0.181 4.181 24 C -0.148 4.148 25 C -0.102 4.102 26 C -0.242 4.242 27 C -0.217 4.217 28 H 0.088 0.912 29 H 0.224 0.776 30 H 0.106 0.894 31 H 0.134 0.866 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.250 0.750 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.133 0.867 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.128 0.872 45 H 0.151 0.849 46 H 0.120 0.880 47 H 0.133 0.867 48 H 0.131 0.869 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 21.709 -10.303 8.486 25.485 hybrid contribution -0.356 1.509 0.435 1.610 sum 21.353 -8.794 8.921 24.756 Atomic orbital electron populations 1.69806 1.08175 1.29188 1.50530 1.26103 0.96431 1.02690 0.96195 0.85391 0.79606 0.76823 0.79876 1.18364 1.20123 1.15169 1.18971 0.81471 0.94820 1.50133 0.92734 1.42023 1.05761 1.07550 1.68139 1.20906 0.90737 0.83344 0.81141 1.90551 1.71228 1.32585 1.54410 1.21900 0.90345 0.91168 1.04275 1.61057 1.18852 1.13813 1.29146 1.22114 1.01973 0.92538 0.90330 1.21095 1.01453 0.91013 0.85119 1.45815 1.70592 1.07777 1.12330 1.19988 0.75668 0.81814 0.89776 1.90697 1.48834 1.67443 1.37790 1.22633 1.00892 0.98194 0.92996 1.21795 0.99961 0.97921 0.77535 1.92754 1.93370 1.87436 1.45933 1.22968 0.92276 0.97670 1.02641 1.22800 0.96805 0.98556 0.99947 1.22845 0.97406 0.91277 1.03240 1.22859 0.87552 0.97726 1.02027 1.23685 1.01911 0.97164 1.01429 1.23164 1.03239 1.04117 0.91181 0.91211 0.77603 0.89357 0.86614 0.91678 0.91331 0.90454 0.93847 0.75029 0.88481 0.88348 0.86725 0.91615 0.91968 0.89306 0.91214 0.87210 0.84906 0.88017 0.86731 0.86892 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.16 13.96 21.66 0.30 -55.86 16 2 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 3 Si 0.96 38.02 27.74 68.60 1.90 39.93 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.23 -7.43 6.52 99.48 0.65 -6.78 16 7 C -0.32 -18.74 10.16 84.04 0.85 -17.89 16 8 H 0.05 3.77 7.39 -2.91 -0.02 3.75 16 9 N -0.59 -27.18 5.09 -306.99 -1.56 -28.74 16 10 C 0.45 19.68 7.52 87.66 0.66 20.34 16 11 O -0.60 -32.55 14.62 -3.08 -0.05 -32.60 16 12 C 0.05 1.56 4.12 85.55 0.35 1.92 16 13 N -0.51 -14.17 4.31 -875.53 -3.78 -17.95 16 14 C 0.06 1.48 4.68 86.30 0.40 1.89 16 15 C 0.14 3.45 5.67 86.38 0.49 3.94 16 16 N -0.71 -14.76 5.44 -463.06 -2.52 -17.28 16 17 C 0.54 12.65 6.64 87.66 0.58 13.23 16 18 O -0.57 -18.02 15.83 -3.04 -0.05 -18.07 16 19 C -0.14 -2.46 1.20 -52.40 -0.06 -2.53 16 20 C 0.08 1.00 7.02 71.98 0.51 1.50 16 21 F -0.21 -3.26 15.79 44.97 0.71 -2.55 16 22 C -0.12 -2.04 7.10 31.12 0.22 -1.82 16 23 C -0.14 -2.67 7.75 31.12 0.24 -2.43 16 24 C -0.11 -1.90 6.94 31.12 0.22 -1.69 16 25 C 0.01 0.14 5.83 44.92 0.26 0.40 16 26 C -0.20 -3.17 9.57 30.62 0.29 -2.88 16 27 C -0.18 -3.41 9.90 30.62 0.30 -3.11 16 28 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 29 H 0.39 14.64 5.76 -92.71 -0.53 14.11 16 30 H 0.09 2.04 7.82 -2.39 -0.02 2.02 16 31 H 0.12 2.89 5.52 -2.39 -0.01 2.87 16 32 H 0.06 2.12 6.60 -2.39 -0.02 2.11 16 33 H 0.07 1.28 8.12 -2.39 -0.02 1.26 16 34 H 0.08 1.78 6.40 -2.39 -0.02 1.76 16 35 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.41 6.32 7.45 -92.71 -0.69 5.63 16 37 H 0.10 0.81 7.08 -2.39 -0.02 0.79 16 38 H 0.10 0.91 8.14 -2.39 -0.02 0.90 16 39 H 0.11 1.68 7.13 -2.39 -0.02 1.67 16 40 H 0.07 1.28 8.10 -2.39 -0.02 1.26 16 41 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.07 1.44 7.41 -2.38 -0.02 1.42 16 44 H 0.11 1.49 7.88 -2.39 -0.02 1.47 16 45 H 0.13 2.39 6.34 -2.39 -0.02 2.38 16 46 H 0.10 1.57 6.06 -2.39 -0.01 1.55 16 47 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 49 H 0.08 1.87 7.41 -2.39 -0.02 1.86 16 Total: -1.00 -80.54 392.74 0.46 -80.08 By element: Atomic # 1 Polarization: 42.85 SS G_CDS: -0.29 Total: 42.56 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 5.79 Total: 10.49 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -7.55 Total: -119.83 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -0.09 Total: -50.67 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.71 Total: -2.55 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 1.90 Total: 39.93 kcal Total: -80.54 0.46 -80.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481185753.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.215 kcal (2) G-P(sol) polarization free energy of solvation -80.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds