Wall clock time and date at job start Sat Apr 11 2020 06:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 119.99993 * 2 1 4 4 H 1.48496 * 109.47226 * 240.00348 * 3 2 1 5 5 H 1.48504 * 109.47102 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47197 * 120.00020 * 3 2 1 7 7 C 1.38805 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00115 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00232 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00330 * 174.60819 * 9 7 2 11 11 C 1.53004 * 110.01344 * 301.45753 * 10 9 7 12 12 N 1.46497 * 109.46993 * 303.90164 * 11 10 9 13 13 C 1.34777 * 119.99513 * 175.13054 * 12 11 10 14 14 O 1.21281 * 120.00355 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99732 * 180.02562 * 13 12 11 16 16 N 1.46502 * 109.47366 * 179.97438 * 15 13 12 17 17 C 1.36828 * 125.06662 * 265.30655 * 16 15 13 18 18 C 1.34238 * 109.93193 * 180.14433 * 17 16 15 19 19 C 1.46493 * 106.99193 * 359.60063 * 18 17 16 20 20 C 1.39632 * 134.02267 * 180.21500 * 19 18 17 21 21 C 1.36624 * 119.76166 * 179.97438 * 20 19 18 22 22 C 1.38830 * 120.52537 * 0.04090 * 21 20 19 23 23 C 1.37745 * 120.67079 * 359.97438 * 22 21 20 24 24 C 1.37687 * 125.05758 * 84.99773 * 16 15 13 25 25 C 1.54272 * 110.07319 * 62.87621 * 10 9 7 26 26 C 1.54889 * 104.19472 * 95.69982 * 25 10 9 27 27 C 1.54883 * 102.75168 * 37.93893 * 26 25 10 28 28 C 1.53872 * 110.03175 * 180.02562 * 10 9 7 29 29 H 0.97001 * 120.00348 * 359.97438 * 1 2 3 30 30 H 0.96997 * 119.99806 * 354.59966 * 9 7 2 31 31 H 1.09004 * 109.46700 * 183.90236 * 11 10 9 32 32 H 1.08997 * 109.46806 * 63.90595 * 11 10 9 33 33 H 0.97001 * 120.00064 * 355.13031 * 12 11 10 34 34 H 1.09001 * 109.47361 * 60.00249 * 15 13 12 35 35 H 1.08997 * 109.47525 * 299.99775 * 15 13 12 36 36 H 1.07997 * 125.03315 * 0.02562 * 17 16 15 37 37 H 1.07998 * 126.50638 * 179.87092 * 18 17 16 38 38 H 1.07999 * 120.12035 * 0.02562 * 20 19 18 39 39 H 1.07998 * 119.73687 * 180.02562 * 21 20 19 40 40 H 1.08010 * 119.66343 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.10983 * 179.97438 * 23 22 21 42 42 H 1.09003 * 110.48527 * 214.37655 * 25 10 9 43 43 H 1.09003 * 110.48342 * 337.01921 * 25 10 9 44 44 H 1.09006 * 110.75456 * 279.62241 * 26 25 10 45 45 H 1.08997 * 110.75483 * 156.25844 * 26 25 10 46 46 H 1.08998 * 110.48813 * 203.37908 * 27 26 25 47 47 H 1.09006 * 110.48626 * 80.73408 * 27 26 25 48 48 H 1.09000 * 110.03547 * 359.95445 * 28 10 9 49 49 H 1.09003 * 110.02922 * 121.37889 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0532 -3.6539 -0.1214 11 6 2.8623 -3.6719 -1.4199 12 7 1.9681 -3.4341 -2.5557 13 6 2.4756 -3.3085 -3.7979 14 8 3.6725 -3.3919 -3.9754 15 6 1.5559 -3.0633 -4.9663 16 7 2.3451 -2.9643 -6.1966 17 6 2.7915 -1.7964 -6.7524 18 6 3.4796 -2.0575 -7.8750 19 6 3.4815 -3.5123 -8.0474 20 6 4.0236 -4.3757 -9.0015 21 6 3.8445 -5.7243 -8.8755 22 6 3.1266 -6.2434 -7.8066 23 6 2.5830 -5.4098 -6.8543 24 6 2.7530 -4.0332 -6.9627 25 6 2.9915 -3.8418 1.0887 26 6 2.1743 -4.7175 2.0707 27 6 1.4383 -5.6974 1.1235 28 6 1.0657 -4.8337 -0.0982 29 1 -0.4851 0.8400 0.0004 30 1 0.3588 -2.3900 0.0771 31 1 3.3444 -4.6429 -1.5340 32 1 3.6218 -2.8909 -1.3855 33 1 1.0109 -3.3671 -2.4137 34 1 1.0097 -2.1331 -4.8097 35 1 0.8499 -3.8892 -5.0526 36 1 2.6147 -0.8104 -6.3488 37 1 3.9472 -1.3330 -8.5252 38 1 4.5833 -3.9790 -9.8356 39 1 4.2643 -6.3917 -9.6135 40 1 2.9938 -7.3118 -7.7204 41 1 2.0259 -5.8234 -6.0266 42 1 3.9040 -4.3564 0.7875 43 1 3.2272 -2.8788 1.5418 44 1 1.4612 -4.1101 2.6281 45 1 2.8353 -5.2581 2.7480 46 1 0.5406 -6.0887 1.6021 47 1 2.1000 -6.5117 0.8279 48 1 0.0452 -4.4646 0.0030 49 1 1.1624 -5.4195 -1.0123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482236618.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:29 Heat of formation + Delta-G solvation = 34.914666 kcal Electronic energy + Delta-G solvation = -29795.724810 eV Core-core repulsion = 25916.159574 eV Total energy + Delta-G solvation = -3879.565236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.31757 -39.43216 -38.20112 -36.85996 -34.17437 -33.40245 -32.86166 -30.85579 -30.34771 -28.84632 -28.36488 -28.15016 -26.63227 -24.36749 -23.23805 -22.59929 -21.53913 -20.84142 -20.22383 -19.74087 -18.70479 -17.33579 -17.05907 -16.98822 -16.42149 -15.74173 -15.41286 -15.15422 -14.91323 -14.80682 -14.37120 -14.03995 -13.85772 -13.76692 -13.39494 -13.23961 -13.12446 -12.85635 -12.68353 -12.56360 -12.27016 -11.78851 -11.58272 -11.51729 -11.50320 -11.17950 -10.84200 -10.80837 -10.79812 -10.70909 -10.60080 -10.31927 -10.20365 -9.95035 -9.82052 -9.72582 -9.45372 -8.98959 -8.55670 -8.08309 -7.58753 -7.09908 -5.88929 -3.18218 1.20373 1.69782 2.63404 2.86435 2.88692 3.36565 3.41597 3.43528 3.63688 4.01238 4.49356 4.68675 4.74035 4.89141 4.94205 5.03785 5.04238 5.07357 5.10913 5.16396 5.18630 5.47969 5.48719 5.52993 5.60170 5.69235 5.73959 5.84126 5.86814 5.87778 6.00142 6.02344 6.10378 6.11262 6.18467 6.24042 6.35932 6.48359 6.51098 6.51718 6.64783 6.70258 6.74914 6.83362 6.87150 6.89913 6.99664 7.28546 7.32353 7.62781 7.89820 8.29705 8.53690 9.41685 9.94926 10.30495 11.32851 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011146 B = 0.003289 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.583127 B = 8511.659542 C =10387.149208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.007 4.007 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.234 4.234 8 H 0.068 0.932 9 N -0.711 5.711 10 C 0.189 3.811 11 C 0.122 3.878 12 N -0.695 5.695 13 C 0.489 3.511 14 O -0.536 6.536 15 C 0.089 3.911 16 N -0.464 5.464 17 C 0.067 3.933 18 C -0.211 4.211 19 C -0.108 4.108 20 C -0.074 4.074 21 C -0.152 4.152 22 C -0.105 4.105 23 C -0.123 4.123 24 C 0.110 3.890 25 C -0.132 4.132 26 C -0.117 4.117 27 C -0.121 4.121 28 C -0.126 4.126 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.403 0.597 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.167 0.833 37 H 0.145 0.855 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.114 0.886 42 H 0.052 0.948 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.069 0.931 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.131 -11.513 -10.860 15.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.203 4.203 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.365 4.365 8 H 0.086 0.914 9 N -0.352 5.352 10 C 0.097 3.903 11 C -0.004 4.004 12 N -0.346 5.346 13 C 0.272 3.728 14 O -0.413 6.413 15 C -0.037 4.037 16 N -0.146 5.146 17 C -0.058 4.058 18 C -0.235 4.235 19 C -0.112 4.112 20 C -0.092 4.092 21 C -0.171 4.171 22 C -0.124 4.124 23 C -0.144 4.144 24 C 0.004 3.996 25 C -0.172 4.172 26 C -0.155 4.155 27 C -0.158 4.158 28 C -0.164 4.164 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.237 0.763 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.185 0.815 37 H 0.163 0.837 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.132 0.868 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.087 0.913 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.890 -11.390 -10.693 15.737 hybrid contribution -0.268 1.214 0.355 1.293 sum 1.623 -10.176 -10.338 14.596 Atomic orbital electron populations 1.69631 1.04988 1.25801 1.57560 1.24668 0.95406 0.97476 1.02796 0.86372 0.78657 0.83824 0.77987 1.21325 1.21723 1.21247 1.19038 0.90972 0.83841 1.42652 0.91369 1.42544 1.05952 0.99435 1.87290 1.20458 0.91317 0.87208 0.91306 1.21897 0.93123 0.99562 0.85854 1.45668 1.11547 1.71392 1.05950 1.20710 0.89488 0.77996 0.84576 1.90735 1.15401 1.50235 1.84923 1.21634 0.93262 1.06278 0.82518 1.43423 1.46158 1.04980 1.20064 1.21843 0.99011 0.89973 0.94940 1.21598 1.08108 0.93394 1.00423 1.19200 1.02056 0.93605 0.96359 1.20219 0.98769 0.92630 0.97629 1.20555 1.02263 0.94966 0.99334 1.20729 0.98388 0.98922 0.94410 1.19996 1.04068 0.89623 1.00668 1.18194 0.99556 0.89106 0.92741 1.22830 0.97322 1.00337 0.96754 1.22385 0.98758 0.97063 0.97249 1.22288 0.99630 0.97633 0.96295 1.22416 0.99830 0.96314 0.97812 0.93483 0.78109 0.93126 0.91459 0.76256 0.85984 0.87100 0.81529 0.83688 0.86356 0.86392 0.86095 0.86770 0.92931 0.90272 0.91377 0.92684 0.92313 0.92276 0.91258 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.80 13.06 55.49 0.72 -25.08 16 2 C -0.01 -0.19 5.50 -17.44 -0.10 -0.29 16 3 Si 0.90 21.58 29.55 -169.99 -5.02 16.55 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.23 -5.83 8.39 -15.06 -0.13 -5.96 16 8 H 0.07 1.73 7.23 -52.48 -0.38 1.35 16 9 N -0.71 -15.21 4.76 -46.19 -0.22 -15.43 16 10 C 0.19 3.26 0.68 -130.70 -0.09 3.17 16 11 C 0.12 2.15 3.99 -4.04 -0.02 2.13 16 12 N -0.70 -11.30 5.10 -60.29 -0.31 -11.60 16 13 C 0.49 8.20 7.90 -10.99 -0.09 8.12 16 14 O -0.54 -11.25 16.42 5.56 0.09 -11.15 16 15 C 0.09 1.16 6.48 -5.19 -0.03 1.12 16 16 N -0.46 -6.77 2.27 -115.71 -0.26 -7.04 16 17 C 0.07 0.93 11.27 -16.73 -0.19 0.74 16 18 C -0.21 -2.85 11.08 -37.67 -0.42 -3.27 16 19 C -0.11 -1.58 6.37 -105.14 -0.67 -2.25 16 20 C -0.07 -0.93 10.05 -39.64 -0.40 -1.33 16 21 C -0.15 -1.75 9.97 -39.95 -0.40 -2.15 16 22 C -0.11 -1.25 10.01 -39.54 -0.40 -1.64 16 23 C -0.12 -1.67 10.00 -39.43 -0.39 -2.06 16 24 C 0.11 1.66 6.80 -83.99 -0.57 1.09 16 25 C -0.13 -2.21 5.94 -25.07 -0.15 -2.35 16 26 C -0.12 -1.69 6.91 -24.74 -0.17 -1.86 16 27 C -0.12 -1.56 6.83 -25.12 -0.17 -1.73 16 28 C -0.13 -1.80 5.80 -25.66 -0.15 -1.95 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.38 8.81 7.28 -40.82 -0.30 8.52 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.40 7.49 -51.93 -0.39 1.01 16 33 H 0.40 6.07 7.99 -40.82 -0.33 5.74 16 34 H 0.12 1.39 8.12 -51.93 -0.42 0.97 16 35 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.17 1.92 8.06 -52.49 -0.42 1.50 16 37 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 41 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.05 0.81 7.85 -51.93 -0.41 0.40 16 43 H 0.08 1.52 7.12 -51.93 -0.37 1.15 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.07 1.03 7.44 -51.93 -0.39 0.64 16 49 H 0.06 0.79 7.55 -51.93 -0.39 0.40 16 LS Contribution 400.04 15.07 6.03 6.03 Total: -1.00 -31.56 400.04 -11.07 -42.62 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -7.58 Total: 15.55 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -4.52 Total: -10.46 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.06 Total: -59.14 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.56 -11.07 -42.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482236618.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.539 kcal (2) G-P(sol) polarization free energy of solvation -31.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds