Wall clock time and date at job start Sat Apr 11 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 119.99993 * 2 1 4 4 H 1.48496 * 109.47226 * 240.00348 * 3 2 1 5 5 H 1.48504 * 109.47102 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47197 * 120.00020 * 3 2 1 7 7 C 1.38805 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00115 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00232 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00330 * 174.60819 * 9 7 2 11 11 C 1.53004 * 110.01344 * 301.45753 * 10 9 7 12 12 N 1.46497 * 109.46993 * 303.90164 * 11 10 9 13 13 C 1.34777 * 119.99513 * 175.13054 * 12 11 10 14 14 O 1.21281 * 120.00355 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99732 * 180.02562 * 13 12 11 16 16 N 1.46502 * 109.47366 * 179.97438 * 15 13 12 17 17 C 1.36828 * 125.06662 * 265.30655 * 16 15 13 18 18 C 1.34238 * 109.93193 * 180.14433 * 17 16 15 19 19 C 1.46493 * 106.99193 * 359.60063 * 18 17 16 20 20 C 1.39632 * 134.02267 * 180.21500 * 19 18 17 21 21 C 1.36624 * 119.76166 * 179.97438 * 20 19 18 22 22 C 1.38830 * 120.52537 * 0.04090 * 21 20 19 23 23 C 1.37745 * 120.67079 * 359.97438 * 22 21 20 24 24 C 1.37687 * 125.05758 * 84.99773 * 16 15 13 25 25 C 1.54272 * 110.07319 * 62.87621 * 10 9 7 26 26 C 1.54889 * 104.19472 * 95.69982 * 25 10 9 27 27 C 1.54883 * 102.75168 * 37.93893 * 26 25 10 28 28 C 1.53872 * 110.03175 * 180.02562 * 10 9 7 29 29 H 0.97001 * 120.00348 * 359.97438 * 1 2 3 30 30 H 0.96997 * 119.99806 * 354.59966 * 9 7 2 31 31 H 1.09004 * 109.46700 * 183.90236 * 11 10 9 32 32 H 1.08997 * 109.46806 * 63.90595 * 11 10 9 33 33 H 0.97001 * 120.00064 * 355.13031 * 12 11 10 34 34 H 1.09001 * 109.47361 * 60.00249 * 15 13 12 35 35 H 1.08997 * 109.47525 * 299.99775 * 15 13 12 36 36 H 1.07997 * 125.03315 * 0.02562 * 17 16 15 37 37 H 1.07998 * 126.50638 * 179.87092 * 18 17 16 38 38 H 1.07999 * 120.12035 * 0.02562 * 20 19 18 39 39 H 1.07998 * 119.73687 * 180.02562 * 21 20 19 40 40 H 1.08010 * 119.66343 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.10983 * 179.97438 * 23 22 21 42 42 H 1.09003 * 110.48527 * 214.37655 * 25 10 9 43 43 H 1.09003 * 110.48342 * 337.01921 * 25 10 9 44 44 H 1.09006 * 110.75456 * 279.62241 * 26 25 10 45 45 H 1.08997 * 110.75483 * 156.25844 * 26 25 10 46 46 H 1.08998 * 110.48813 * 203.37908 * 27 26 25 47 47 H 1.09006 * 110.48626 * 80.73408 * 27 26 25 48 48 H 1.09000 * 110.03547 * 359.95445 * 28 10 9 49 49 H 1.09003 * 110.02922 * 121.37889 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0532 -3.6539 -0.1214 11 6 2.8623 -3.6719 -1.4199 12 7 1.9681 -3.4341 -2.5557 13 6 2.4756 -3.3085 -3.7979 14 8 3.6725 -3.3919 -3.9754 15 6 1.5559 -3.0633 -4.9663 16 7 2.3451 -2.9643 -6.1966 17 6 2.7915 -1.7964 -6.7524 18 6 3.4796 -2.0575 -7.8750 19 6 3.4815 -3.5123 -8.0474 20 6 4.0236 -4.3757 -9.0015 21 6 3.8445 -5.7243 -8.8755 22 6 3.1266 -6.2434 -7.8066 23 6 2.5830 -5.4098 -6.8543 24 6 2.7530 -4.0332 -6.9627 25 6 2.9915 -3.8418 1.0887 26 6 2.1743 -4.7175 2.0707 27 6 1.4383 -5.6974 1.1235 28 6 1.0657 -4.8337 -0.0982 29 1 -0.4851 0.8400 0.0004 30 1 0.3588 -2.3900 0.0771 31 1 3.3444 -4.6429 -1.5340 32 1 3.6218 -2.8909 -1.3855 33 1 1.0109 -3.3671 -2.4137 34 1 1.0097 -2.1331 -4.8097 35 1 0.8499 -3.8892 -5.0526 36 1 2.6147 -0.8104 -6.3488 37 1 3.9472 -1.3330 -8.5252 38 1 4.5833 -3.9790 -9.8356 39 1 4.2643 -6.3917 -9.6135 40 1 2.9938 -7.3118 -7.7204 41 1 2.0259 -5.8234 -6.0266 42 1 3.9040 -4.3564 0.7875 43 1 3.2272 -2.8788 1.5418 44 1 1.4612 -4.1101 2.6281 45 1 2.8353 -5.2581 2.7480 46 1 0.5406 -6.0887 1.6021 47 1 2.1000 -6.5117 0.8279 48 1 0.0452 -4.4646 0.0030 49 1 1.1624 -5.4195 -1.0123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482236618.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:28 Heat of formation + Delta-G solvation = 17.609811 kcal Electronic energy + Delta-G solvation = -29796.475205 eV Core-core repulsion = 25916.159574 eV Total energy + Delta-G solvation = -3880.315631 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.33184 -40.78785 -39.54958 -37.82730 -35.59832 -35.15296 -33.91197 -32.46490 -31.43206 -29.87558 -29.62176 -29.52131 -27.81434 -25.99954 -24.76009 -23.57933 -22.53343 -22.05201 -21.35506 -20.94646 -20.11238 -18.96169 -18.49953 -18.16435 -17.41694 -17.16553 -16.52209 -16.31232 -16.23625 -16.10669 -15.86645 -15.38475 -15.18854 -14.89249 -14.76563 -14.46872 -14.30405 -14.04254 -13.95773 -13.65320 -13.46185 -13.23571 -13.03164 -12.92259 -12.50306 -12.49494 -12.46171 -12.39733 -12.18945 -11.89553 -11.74769 -11.73256 -11.60193 -11.40721 -11.33490 -11.13133 -10.88209 -10.53258 -9.99642 -9.08243 -8.96642 -8.57991 -7.92816 -5.18027 0.23759 0.72492 1.42755 1.44953 1.49172 1.53195 1.60869 1.88555 2.39711 2.55112 3.03928 3.37908 3.67993 3.73893 3.77652 3.79012 3.85360 3.94786 3.97098 4.10424 4.13157 4.17588 4.30918 4.42766 4.55594 4.56687 4.61188 4.65191 4.73703 4.78391 4.85341 4.94300 4.96084 5.03051 5.05294 5.12204 5.17620 5.18354 5.26175 5.38510 5.45056 5.54675 5.58404 5.60332 5.64012 5.71784 5.87317 5.91076 6.28782 6.31144 6.33058 6.59405 7.21764 7.38991 8.11947 8.37251 9.28989 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011146 B = 0.003289 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.583127 B = 8511.659542 C =10387.149208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.059 4.059 3 Si 0.946 3.054 4 H -0.291 1.291 5 H -0.295 1.295 6 H -0.286 1.286 7 C -0.215 4.215 8 H 0.058 0.942 9 N -0.712 5.712 10 C 0.186 3.814 11 C 0.130 3.870 12 N -0.690 5.690 13 C 0.488 3.512 14 O -0.582 6.582 15 C 0.094 3.906 16 N -0.472 5.472 17 C 0.046 3.954 18 C -0.217 4.217 19 C -0.138 4.138 20 C -0.084 4.084 21 C -0.153 4.153 22 C -0.105 4.105 23 C -0.143 4.143 24 C 0.083 3.917 25 C -0.134 4.134 26 C -0.113 4.113 27 C -0.113 4.113 28 C -0.119 4.119 29 H 0.249 0.751 30 H 0.377 0.623 31 H 0.063 0.937 32 H 0.028 0.972 33 H 0.410 0.590 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.182 0.818 37 H 0.164 0.836 38 H 0.138 0.862 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.123 0.877 42 H 0.066 0.934 43 H 0.045 0.955 44 H 0.050 0.950 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.991 -13.838 -11.637 18.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.252 4.252 3 Si 0.778 3.222 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.348 4.348 8 H 0.076 0.924 9 N -0.353 5.353 10 C 0.095 3.905 11 C 0.003 3.997 12 N -0.340 5.340 13 C 0.273 3.727 14 O -0.462 6.462 15 C -0.031 4.031 16 N -0.155 5.155 17 C -0.078 4.078 18 C -0.242 4.242 19 C -0.142 4.142 20 C -0.103 4.103 21 C -0.172 4.172 22 C -0.124 4.124 23 C -0.164 4.164 24 C -0.022 4.022 25 C -0.174 4.174 26 C -0.151 4.151 27 C -0.150 4.150 28 C -0.157 4.157 29 H 0.058 0.942 30 H 0.211 0.789 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.246 0.754 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.199 0.801 37 H 0.182 0.818 38 H 0.156 0.844 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.141 0.859 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.097 0.903 48 H 0.084 0.916 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.755 -13.743 -11.465 17.984 hybrid contribution -0.112 1.829 0.572 1.920 sum 1.643 -11.914 -10.893 16.227 Atomic orbital electron populations 1.69725 1.05697 1.25591 1.59802 1.25142 0.96023 0.99569 1.04461 0.85634 0.77524 0.81544 0.77549 1.21761 1.22097 1.21267 1.19139 0.90615 0.85151 1.39849 0.92363 1.42594 1.05623 1.00007 1.87056 1.20693 0.91995 0.86630 0.91132 1.21729 0.92628 0.98768 0.86558 1.45643 1.11695 1.70995 1.05677 1.21388 0.89373 0.76593 0.85339 1.90709 1.17595 1.52303 1.85621 1.21739 0.92538 1.08298 0.80520 1.43558 1.46573 1.05110 1.20272 1.22235 0.99529 0.90603 0.95442 1.21943 1.07892 0.93669 1.00688 1.19625 1.02973 0.94378 0.97236 1.20576 0.98732 0.93134 0.97846 1.20970 1.01495 0.95036 0.99690 1.21154 0.97232 1.00246 0.93729 1.20286 1.05004 0.89354 1.01733 1.18598 1.00366 0.89926 0.93335 1.22799 0.98266 0.99464 0.96890 1.22354 0.98518 0.96959 0.97244 1.22282 1.00546 0.97285 0.94907 1.22364 0.98496 0.95224 0.99629 0.94217 0.78892 0.91855 0.95313 0.75364 0.84369 0.84031 0.80109 0.81818 0.84382 0.83400 0.83318 0.85907 0.91520 0.93571 0.93153 0.90550 0.90610 0.90321 0.91611 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -53.69 13.06 21.65 0.28 -53.41 16 2 C -0.06 -3.16 5.50 84.86 0.47 -2.69 16 3 Si 0.95 45.14 29.55 68.60 2.03 47.17 16 4 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 7 C -0.22 -10.91 8.39 84.03 0.70 -10.20 16 8 H 0.06 3.05 7.23 -2.91 -0.02 3.02 16 9 N -0.71 -30.61 4.76 -300.06 -1.43 -32.04 16 10 C 0.19 6.27 0.68 4.33 0.00 6.28 16 11 C 0.13 4.55 3.99 86.38 0.34 4.89 16 12 N -0.69 -22.03 5.10 -463.06 -2.36 -24.40 16 13 C 0.49 16.25 7.90 87.66 0.69 16.94 16 14 O -0.58 -24.80 16.42 -3.03 -0.05 -24.85 16 15 C 0.09 2.37 6.48 85.63 0.55 2.92 16 16 N -0.47 -13.66 2.27 -520.00 -1.18 -14.84 16 17 C 0.05 1.28 11.27 83.00 0.94 2.22 16 18 C -0.22 -5.88 11.08 23.51 0.26 -5.62 16 19 C -0.14 -3.99 6.37 -20.20 -0.13 -4.11 16 20 C -0.08 -2.01 10.05 22.23 0.22 -1.79 16 21 C -0.15 -3.17 9.97 22.03 0.22 -2.95 16 22 C -0.10 -2.25 10.01 22.29 0.22 -2.03 16 23 C -0.14 -3.72 10.00 22.37 0.22 -3.49 16 24 C 0.08 2.49 6.80 39.03 0.27 2.76 16 25 C -0.13 -4.39 5.94 31.67 0.19 -4.20 16 26 C -0.11 -3.05 6.91 31.88 0.22 -2.83 16 27 C -0.11 -2.53 6.83 31.64 0.22 -2.32 16 28 C -0.12 -3.13 5.80 31.29 0.18 -2.94 16 29 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 30 H 0.38 17.34 7.28 -92.71 -0.67 16.67 16 31 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.03 1.23 7.49 -2.39 -0.02 1.21 16 33 H 0.41 11.93 7.99 -92.71 -0.74 11.19 16 34 H 0.14 2.99 8.12 -2.39 -0.02 2.98 16 35 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.18 4.19 8.06 -2.91 -0.02 4.16 16 37 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 38 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 39 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 40 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 41 H 0.12 2.81 8.06 -2.91 -0.02 2.78 16 42 H 0.07 1.98 7.85 -2.39 -0.02 1.96 16 43 H 0.05 1.80 7.12 -2.39 -0.02 1.79 16 44 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 48 H 0.07 1.81 7.44 -2.39 -0.02 1.79 16 49 H 0.08 1.80 7.55 -2.39 -0.02 1.78 16 Total: -1.00 -69.93 400.04 2.63 -67.30 By element: Atomic # 1 Polarization: 44.69 SS G_CDS: -0.45 Total: 44.23 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 5.80 Total: -9.17 kcal Atomic # 7 Polarization: -120.00 SS G_CDS: -4.69 Total: -124.69 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.05 Total: -24.85 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -69.93 2.63 -67.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482236618.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.907 kcal (2) G-P(sol) polarization free energy of solvation -69.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds