Wall clock time and date at job start Sat Apr 11 2020 06:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99788 * 2 1 4 4 H 1.48497 * 109.47049 * 270.00079 * 3 2 1 5 5 H 1.48500 * 109.47114 * 30.00436 * 3 2 1 6 6 H 1.48500 * 109.46949 * 150.00322 * 3 2 1 7 7 C 1.38810 * 120.00363 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00551 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99689 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00090 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47269 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.47194 * 304.99635 * 11 10 9 13 13 C 1.52999 * 109.46991 * 65.00478 * 11 10 9 14 14 C 1.52997 * 109.46991 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47131 * 299.99311 * 14 13 11 16 16 C 1.53002 * 109.46972 * 60.00459 * 15 14 13 17 17 C 1.52997 * 109.46817 * 299.99733 * 16 15 14 18 18 H 1.09001 * 109.47289 * 180.02562 * 17 16 15 19 19 N 1.46500 * 109.47473 * 299.99988 * 17 16 15 20 20 C 1.34768 * 120.00056 * 275.00296 * 19 17 16 21 21 O 1.21601 * 120.00319 * 359.97438 * 20 19 17 22 22 C 1.47506 * 120.00223 * 179.97438 * 20 19 17 23 23 C 1.41195 * 126.37628 * 179.97438 * 22 20 19 24 24 C 1.37991 * 106.86506 * 179.97438 * 23 22 20 25 25 C 1.41388 * 131.97845 * 180.02562 * 24 23 22 26 26 C 1.35742 * 119.32883 * 180.02562 * 25 24 23 27 27 C 1.40821 * 119.72084 * 359.96958 * 26 25 24 28 28 C 1.34544 * 120.58688 * 0.02562 * 27 26 25 29 29 N 1.37445 * 120.73680 * 0.02562 * 28 27 26 30 30 C 1.35127 * 131.28144 * 180.28741 * 29 28 27 31 31 H 0.97002 * 120.00534 * 0.02562 * 1 2 3 32 32 H 0.97002 * 120.00403 * 0.02562 * 9 7 2 33 33 H 1.09002 * 109.46913 * 59.99757 * 10 9 7 34 34 H 1.09001 * 109.46815 * 300.00334 * 10 9 7 35 35 H 1.09002 * 109.46719 * 299.99711 * 13 11 10 36 36 H 1.08993 * 109.47839 * 59.99553 * 13 11 10 37 37 H 1.09001 * 109.47289 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.47611 * 59.99933 * 14 13 11 39 39 H 1.08996 * 109.47452 * 300.00000 * 15 14 13 40 40 H 1.09000 * 109.47054 * 180.02562 * 15 14 13 41 41 H 1.09002 * 109.47070 * 179.97438 * 16 15 14 42 42 H 1.08996 * 109.47407 * 59.99513 * 16 15 14 43 43 H 0.97007 * 119.99645 * 94.99637 * 19 17 16 44 44 H 1.07999 * 126.56319 * 0.02562 * 23 22 20 45 45 H 1.07999 * 120.33550 * 359.96452 * 25 24 23 46 46 H 1.08001 * 120.13814 * 179.97438 * 26 25 24 47 47 H 1.08004 * 119.71125 * 179.97438 * 27 26 25 48 48 H 1.08000 * 119.62947 * 179.97438 * 28 27 26 49 49 H 1.07996 * 125.61890 * 359.96635 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.3802 -4.7127 0.8421 13 6 0.2687 -4.8115 -1.3070 14 6 -0.7259 -5.9741 -1.3061 15 6 0.0345 -7.2957 -1.1801 16 6 0.8297 -7.3040 0.1270 17 6 1.8243 -6.1414 0.1261 18 1 2.3912 -6.1475 1.0571 19 7 2.7434 -6.2858 -1.0056 20 6 3.8425 -7.0567 -0.8869 21 8 4.0716 -7.6320 0.1596 22 6 4.7676 -7.2026 -2.0265 23 6 5.9519 -7.9710 -2.0507 24 6 6.5001 -7.8222 -3.3082 25 6 7.6702 -8.3526 -3.8986 26 6 7.9720 -8.0305 -5.1822 27 6 7.1187 -7.1761 -5.9067 28 6 6.0070 -6.6755 -5.3377 29 7 5.6814 -6.9867 -4.0392 30 6 4.6344 -6.6163 -3.2693 31 1 -0.4851 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6848 -3.7144 0.8894 34 1 2.6848 -3.7144 -0.8905 35 1 -0.2734 -3.8701 -1.3965 36 1 0.9525 -4.9185 -2.1490 37 1 -1.2928 -5.9680 -2.2371 38 1 -1.4098 -5.8666 -0.4641 39 1 0.7182 -7.4032 -2.0221 40 1 -0.6741 -8.1240 -1.1799 41 1 1.3711 -8.2457 0.2170 42 1 0.1460 -7.1964 0.9690 43 1 2.5608 -5.8267 -1.8403 44 1 6.3516 -8.5626 -1.2403 45 1 8.3179 -9.0067 -3.3336 46 1 8.8627 -8.4280 -5.6460 47 1 7.3592 -6.9196 -6.9279 48 1 5.3638 -6.0213 -5.9075 49 1 3.8269 -5.9678 -3.5755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483441046.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:35 Heat of formation + Delta-G solvation = 34.541761 kcal Electronic energy + Delta-G solvation = -29550.364230 eV Core-core repulsion = 25670.782823 eV Total energy + Delta-G solvation = -3879.581407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.41688 -40.08582 -38.04944 -36.57220 -34.62442 -33.54384 -33.28896 -31.89826 -30.66584 -29.67933 -29.16886 -27.94092 -25.30336 -24.41891 -23.03911 -22.83222 -22.22653 -21.81657 -20.68406 -20.01715 -18.88293 -17.95931 -17.46870 -17.05117 -16.25655 -15.77515 -15.69537 -15.33914 -15.18243 -14.71320 -14.64982 -14.54479 -14.08152 -13.82148 -13.62193 -13.52351 -13.23721 -13.03432 -12.70201 -12.54218 -12.24930 -12.05653 -11.90675 -11.88124 -11.64729 -11.54061 -11.36362 -10.88580 -10.86818 -10.70086 -10.69106 -10.32252 -10.18357 -9.95489 -9.84163 -9.80083 -9.59286 -8.92479 -8.84621 -8.65215 -7.63468 -6.89993 -5.75894 -3.03810 0.49106 1.08864 2.02168 2.41631 3.22246 3.37332 3.43496 3.49234 3.50943 3.61135 4.18765 4.48583 4.51089 4.58555 4.68627 4.79041 4.88834 4.94216 4.96216 4.99258 5.16534 5.27586 5.34679 5.38545 5.53459 5.58884 5.65388 5.67729 5.69054 5.73719 5.80418 5.84644 5.87807 5.97564 6.07037 6.11398 6.19104 6.22650 6.27416 6.32620 6.42476 6.49903 6.52073 6.60796 6.68670 6.71111 6.85295 6.92225 6.98417 7.70801 7.72348 8.42389 8.43469 9.54718 10.12932 10.47874 11.47037 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009165 B = 0.003061 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3054.489297 B = 9146.044754 C =11068.137603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.160 3.840 11 C -0.102 4.102 12 H 0.086 0.914 13 C -0.109 4.109 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.128 4.128 17 C 0.156 3.844 18 H 0.089 0.911 19 N -0.711 5.711 20 C 0.587 3.413 21 O -0.543 6.543 22 C -0.163 4.163 23 C -0.134 4.134 24 C 0.021 3.979 25 C -0.073 4.073 26 C -0.138 4.138 27 C -0.136 4.136 28 C 0.041 3.959 29 N -0.338 5.338 30 C -0.008 4.008 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.398 0.602 44 H 0.155 0.845 45 H 0.143 0.857 46 H 0.133 0.867 47 H 0.145 0.855 48 H 0.163 0.837 49 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.065 -19.629 -12.221 24.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.032 3.968 11 C -0.121 4.121 12 H 0.104 0.896 13 C -0.147 4.147 14 C -0.158 4.158 15 C -0.153 4.153 16 C -0.167 4.167 17 C 0.051 3.949 18 H 0.107 0.893 19 N -0.362 5.362 20 C 0.374 3.626 21 O -0.421 6.421 22 C -0.171 4.171 23 C -0.159 4.159 24 C -0.083 4.083 25 C -0.092 4.092 26 C -0.158 4.158 27 C -0.156 4.156 28 C -0.077 4.077 29 N -0.001 5.001 30 C -0.142 4.142 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.234 0.766 44 H 0.172 0.828 45 H 0.160 0.840 46 H 0.151 0.849 47 H 0.163 0.837 48 H 0.180 0.820 49 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 9.327 -19.790 -11.679 24.800 hybrid contribution 0.062 1.356 -0.557 1.468 sum 9.389 -18.434 -12.236 24.035 Atomic orbital electron populations 1.69650 1.05060 1.25580 1.58021 1.24712 0.95504 0.97599 1.03181 0.86211 0.78724 0.83957 0.77458 1.21814 1.21783 1.20782 1.19227 0.91009 0.84229 1.42337 0.91328 1.42371 1.05809 0.99912 1.89436 1.20643 0.92978 0.85278 0.97871 1.21627 0.97809 0.93467 0.99175 0.89623 1.21522 0.97615 0.98957 0.96622 1.21586 0.98044 0.94570 1.01620 1.21487 0.98587 0.97409 0.97813 1.21903 0.97899 0.98687 0.98186 1.20955 0.89697 0.94404 0.89824 0.89334 1.45955 1.23891 1.49419 1.16954 1.17384 0.80130 0.78674 0.86452 1.90756 1.74772 1.47505 1.29066 1.19704 0.99036 1.04712 0.93653 1.21100 0.95749 1.03771 0.95232 1.18826 0.95549 1.00890 0.93007 1.20666 0.94215 0.99061 0.95222 1.20928 1.00575 0.99728 0.94552 1.20730 0.94305 0.99440 1.01154 1.21723 0.99764 1.02645 0.83558 1.41282 1.17640 1.31798 1.09423 1.22172 0.94111 1.06868 0.91056 0.93569 0.78229 0.96384 0.96448 0.90308 0.92869 0.92359 0.91889 0.92322 0.92544 0.91670 0.91051 0.76612 0.82760 0.83963 0.84920 0.83729 0.82012 0.80667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.17 5.33 -59.91 -0.32 -18.49 16 10 C 0.16 3.18 5.42 -4.04 -0.02 3.16 16 11 C -0.10 -1.58 2.02 -90.62 -0.18 -1.76 16 12 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 13 C -0.11 -1.56 4.90 -26.73 -0.13 -1.69 16 14 C -0.12 -1.44 5.92 -26.73 -0.16 -1.59 16 15 C -0.12 -1.29 5.77 -26.73 -0.15 -1.44 16 16 C -0.13 -1.59 5.60 -26.73 -0.15 -1.74 16 17 C 0.16 2.20 2.23 -67.93 -0.15 2.05 16 18 H 0.09 1.42 7.57 -51.93 -0.39 1.02 16 19 N -0.71 -9.49 3.61 -54.86 -0.20 -9.69 16 20 C 0.59 8.81 7.78 -12.49 -0.10 8.72 16 21 O -0.54 -9.89 16.58 5.28 0.09 -9.80 16 22 C -0.16 -2.16 6.12 -105.06 -0.64 -2.81 16 23 C -0.13 -1.70 10.78 -38.55 -0.42 -2.11 16 24 C 0.02 0.24 6.70 -84.01 -0.56 -0.33 16 25 C -0.07 -0.62 10.11 -39.28 -0.40 -1.02 16 26 C -0.14 -0.96 10.07 -39.50 -0.40 -1.36 16 27 C -0.14 -0.90 9.97 -39.91 -0.40 -1.30 16 28 C 0.04 0.32 10.89 -16.34 -0.18 0.15 16 29 N -0.34 -3.55 2.92 -60.42 -0.18 -3.73 16 30 C -0.01 -0.09 11.09 -16.17 -0.18 -0.27 16 31 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.38 9.93 6.85 -40.82 -0.28 9.65 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.02 0.35 7.61 -51.93 -0.40 -0.05 16 35 H 0.08 1.34 7.18 -51.93 -0.37 0.96 16 36 H 0.05 0.70 6.51 -51.93 -0.34 0.37 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.65 7.60 -51.93 -0.39 0.25 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.40 4.73 5.57 -40.82 -0.23 4.50 16 44 H 0.15 1.84 8.06 -52.49 -0.42 1.41 16 45 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 47 H 0.15 0.54 8.06 -52.48 -0.42 0.12 16 48 H 0.16 0.82 8.06 -52.49 -0.42 0.39 16 49 H 0.18 1.48 7.42 -52.49 -0.39 1.09 16 LS Contribution 392.96 15.07 5.92 5.92 Total: -1.00 -34.13 392.96 -10.86 -44.98 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -7.41 Total: 11.28 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -4.46 Total: -10.62 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 0.03 Total: -59.23 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.13 -10.86 -44.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483441046.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.525 kcal (2) G-P(sol) polarization free energy of solvation -34.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds