Wall clock time and date at job start Sat Apr 11 2020 06:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 119.99771 * 2 1 4 4 H 1.48496 * 109.47359 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47077 * 300.00267 * 3 2 1 6 6 H 1.48504 * 109.46947 * 59.99647 * 3 2 1 7 7 C 1.38941 * 120.00471 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00479 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99932 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00003 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00328 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00035 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47217 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00072 * 177.91111 * 13 12 10 15 15 C 1.52998 * 115.55148 * 294.31496 * 14 13 12 16 16 N 1.46499 * 109.46943 * 272.74637 * 15 14 13 17 17 C 1.34780 * 120.00506 * 174.94926 * 16 15 14 18 18 O 1.21281 * 119.99583 * 0.02562 * 17 16 15 19 19 C 1.50689 * 120.00458 * 180.02562 * 17 16 15 20 20 C 1.53008 * 109.47327 * 180.02562 * 19 17 16 21 21 C 1.52997 * 109.47047 * 179.97438 * 20 19 17 22 22 C 1.52998 * 109.47654 * 300.00213 * 21 20 19 23 23 F 1.39894 * 109.47343 * 180.02562 * 22 21 20 24 24 C 1.53000 * 109.47063 * 60.00058 * 22 21 20 25 25 C 1.53003 * 109.47300 * 300.00121 * 19 17 16 26 26 C 1.52998 * 117.49913 * 79.97993 * 14 13 12 27 27 C 1.52996 * 117.50100 * 148.64131 * 14 13 12 28 28 H 0.96998 * 120.00425 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00063 * 0.02562 * 9 7 2 30 30 H 1.09006 * 109.47008 * 59.99925 * 12 10 9 31 31 H 1.09000 * 109.47357 * 300.00062 * 12 10 9 32 32 H 1.00901 * 111.00006 * 301.86730 * 13 12 10 33 33 H 1.08992 * 109.47840 * 152.74660 * 15 14 13 34 34 H 1.09002 * 109.47250 * 32.74019 * 15 14 13 35 35 H 0.97004 * 119.99990 * 354.95369 * 16 15 14 36 36 H 1.09007 * 109.47385 * 60.00111 * 19 17 16 37 37 H 1.08995 * 109.46720 * 59.99913 * 20 19 17 38 38 H 1.08996 * 109.46509 * 299.99802 * 20 19 17 39 39 H 1.09004 * 109.47058 * 60.00472 * 21 20 19 40 40 H 1.08999 * 109.46715 * 179.97438 * 21 20 19 41 41 H 1.09007 * 109.46597 * 300.00291 * 22 21 20 42 42 H 1.08992 * 109.47409 * 60.00149 * 24 22 21 43 43 H 1.08999 * 109.46880 * 180.02562 * 24 22 21 44 44 H 1.09004 * 109.46774 * 60.00323 * 25 19 17 45 45 H 1.08995 * 109.47278 * 300.00412 * 25 19 17 46 46 H 1.09000 * 117.50355 * 215.00412 * 26 14 13 47 47 H 1.09002 * 117.49894 * 0.02562 * 26 14 13 48 48 H 1.09007 * 117.49784 * 359.97423 * 27 14 13 49 49 H 1.09001 * 117.50223 * 144.97590 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8891 2.3965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0888 -1.2032 -0.0001 9 7 1.3234 -2.3906 -0.0016 10 6 1.9974 -3.5577 -0.0016 11 8 3.2104 -3.5577 -0.0011 12 6 1.2440 -4.8629 -0.0022 13 7 2.1986 -5.9794 -0.0014 14 6 1.4991 -7.2702 0.0480 15 6 0.7192 -7.5492 1.3343 16 7 1.6094 -8.1656 2.3212 17 6 1.1657 -8.4081 3.5705 18 8 0.0293 -8.1164 3.8777 19 6 2.0816 -9.0416 4.5857 20 6 1.3368 -9.2061 5.9121 21 6 2.2666 -9.8499 6.9426 22 6 2.7166 -11.2219 6.4368 23 9 3.5662 -11.8108 7.3794 24 6 3.4614 -11.0574 5.1105 25 6 2.5316 -10.4139 4.0805 26 6 0.9191 -7.8100 -1.2609 27 6 2.1622 -8.4602 -0.6483 28 1 -0.4851 0.8400 -0.0004 29 1 0.3535 -2.3907 -0.0024 30 1 0.6176 -4.9205 -0.8925 31 1 0.6169 -4.9209 0.8875 32 1 2.8122 -5.9310 -0.8010 33 1 -0.1077 -8.2257 1.1185 34 1 0.3282 -6.6129 1.7326 35 1 2.5182 -8.3992 2.0754 36 1 2.9541 -8.4054 4.7350 37 1 0.4647 -9.8425 5.7625 38 1 1.0160 -8.2286 6.2722 39 1 3.1390 -9.2138 7.0923 40 1 1.7361 -9.9666 7.8876 41 1 1.8440 -11.8580 6.2872 42 1 4.3337 -10.4214 5.2601 43 1 3.7815 -12.0350 4.7500 44 1 3.0621 -10.2971 3.1355 45 1 1.6593 -11.0501 3.9312 46 1 -0.0180 -8.3640 -1.2056 47 1 1.0570 -7.2076 -2.1587 48 1 3.1174 -8.2853 -1.1436 49 1 2.0432 -9.4419 -0.1898 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483764057.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:49 Heat of formation + Delta-G solvation = -119.358955 kcal Electronic energy + Delta-G solvation = -29595.604638 eV Core-core repulsion = 25278.580370 eV Total energy + Delta-G solvation = -4317.024267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -47.94843 -40.41302 -39.05964 -37.91704 -37.38862 -34.35061 -33.99123 -32.64683 -31.32495 -31.20425 -30.96458 -27.26072 -26.55785 -24.10516 -23.64651 -23.19683 -22.59896 -20.87917 -20.18954 -19.68164 -19.26111 -17.91450 -17.44754 -16.62506 -16.43519 -16.38658 -16.06132 -15.52173 -15.37870 -15.28519 -14.92208 -14.52226 -14.28704 -14.08796 -14.06219 -13.94406 -13.62989 -13.28108 -13.12561 -12.78153 -12.61864 -12.54920 -12.24434 -12.06229 -11.93390 -11.75620 -11.66508 -11.60631 -11.49926 -11.37153 -11.12823 -10.89009 -10.81210 -10.46053 -10.39206 -10.35477 -10.23506 -9.81006 -9.53976 -9.12503 -8.47643 -8.11517 -7.98274 -6.43338 -3.84413 2.53928 2.93061 3.15140 3.25881 3.32825 3.57978 3.87007 4.01258 4.03023 4.07915 4.16982 4.23358 4.42710 4.45504 4.58143 4.59642 4.61201 4.74896 4.81789 4.88129 4.97075 5.04417 5.08574 5.23291 5.25222 5.40625 5.42447 5.47200 5.50658 5.52284 5.61188 5.65814 5.69179 5.69834 5.71801 5.82280 5.84630 5.89715 5.95588 5.98249 6.23105 6.33413 7.08170 7.40602 7.50953 7.53765 8.04078 8.13277 8.58651 9.15826 9.51912 10.02788 10.74345 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.002115 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.519657 B =13232.754585 C =14376.469129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.562 5.562 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.626 5.626 14 C 0.039 3.961 15 C 0.165 3.835 16 N -0.717 5.717 17 C 0.517 3.483 18 O -0.542 6.542 19 C -0.111 4.111 20 C -0.096 4.096 21 C -0.146 4.146 22 C 0.089 3.911 23 F -0.216 7.216 24 C -0.143 4.143 25 C -0.107 4.107 26 C -0.206 4.206 27 C -0.167 4.167 28 H 0.271 0.729 29 H 0.393 0.607 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.354 0.646 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.403 0.597 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.100 0.900 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.531 -24.252 5.984 25.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.226 3.774 11 O -0.469 6.469 12 C -0.082 4.082 13 N -0.257 5.257 14 C -0.055 4.055 15 C 0.041 3.959 16 N -0.368 5.368 17 C 0.303 3.697 18 O -0.419 6.419 19 C -0.132 4.132 20 C -0.134 4.134 21 C -0.184 4.184 22 C 0.053 3.947 23 F -0.197 7.197 24 C -0.181 4.181 25 C -0.145 4.145 26 C -0.247 4.247 27 C -0.205 4.205 28 H 0.081 0.919 29 H 0.226 0.774 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.174 0.826 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.238 0.762 36 H 0.121 0.879 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.116 0.884 47 H 0.116 0.884 48 H 0.119 0.881 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.530 -23.811 6.910 24.840 hybrid contribution -0.080 0.780 -1.112 1.361 sum 1.451 -23.031 5.798 23.793 Atomic orbital electron populations 1.69617 1.05944 1.28115 1.50476 1.25274 0.95646 0.99768 0.97287 0.85799 0.79694 0.81109 0.77730 1.19216 1.20752 1.20703 1.19743 0.93379 0.82175 1.47582 0.87862 1.41863 1.09243 1.04599 1.64161 1.19751 0.88348 0.84657 0.84655 1.90524 1.13705 1.87072 1.55564 1.21690 0.94402 0.90564 1.01558 1.59848 1.18549 0.98079 1.49224 1.21870 1.00444 0.90931 0.92223 1.20721 0.90874 0.98680 0.85588 1.45924 1.16884 1.62789 1.11210 1.20532 0.88179 0.78435 0.82578 1.90714 1.19748 1.52347 1.79078 1.21418 0.99241 0.97649 0.94907 1.21279 0.97557 1.02465 0.92141 1.22160 1.00998 0.95498 0.99697 1.21647 0.91779 0.94573 0.86735 1.92811 1.73640 1.85822 1.67451 1.22107 0.99267 1.02490 0.94264 1.21459 0.99782 0.94702 0.98556 1.23662 0.97981 1.04983 0.98065 1.23149 0.97577 0.96461 1.03311 0.91874 0.77426 0.93452 0.89440 0.82593 0.91144 0.90144 0.76193 0.87947 0.90768 0.90134 0.90488 0.90355 0.89899 0.90269 0.90355 0.90490 0.90916 0.88416 0.88410 0.88141 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.57 13.05 55.49 0.72 -23.84 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 10 C 0.44 10.29 7.82 -10.99 -0.09 10.21 16 11 O -0.58 -15.65 15.82 5.54 0.09 -15.56 16 12 C 0.05 0.86 6.03 -4.97 -0.03 0.83 16 13 N -0.63 -9.41 6.26 -101.22 -0.63 -10.04 16 14 C 0.04 0.43 1.90 -131.61 -0.25 0.18 16 15 C 0.17 1.92 5.75 -4.04 -0.02 1.89 16 16 N -0.72 -7.33 5.36 -60.30 -0.32 -7.66 16 17 C 0.52 5.87 7.15 -10.99 -0.08 5.79 16 18 O -0.54 -8.31 15.98 5.56 0.09 -8.22 16 19 C -0.11 -0.89 2.53 -91.77 -0.23 -1.12 16 20 C -0.10 -0.79 4.49 -26.73 -0.12 -0.91 16 21 C -0.15 -1.01 5.66 -26.73 -0.15 -1.16 16 22 C 0.09 0.61 3.87 -26.73 -0.10 0.50 16 23 F -0.22 -2.02 17.08 2.25 0.04 -1.98 16 24 C -0.14 -0.82 5.66 -26.75 -0.15 -0.97 16 25 C -0.11 -0.62 5.09 -26.75 -0.14 -0.75 16 26 C -0.21 -1.96 10.07 -26.69 -0.27 -2.23 16 27 C -0.17 -1.43 9.56 -26.70 -0.26 -1.68 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.39 9.55 7.90 -40.82 -0.32 9.22 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.46 6.55 -51.93 -0.34 1.12 16 32 H 0.35 5.44 8.38 -39.29 -0.33 5.11 16 33 H 0.07 0.76 7.89 -51.93 -0.41 0.35 16 34 H 0.08 1.14 6.46 -51.93 -0.34 0.80 16 35 H 0.40 3.38 7.59 -40.82 -0.31 3.07 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 38 H 0.08 0.77 8.10 -51.93 -0.42 0.34 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.36 7.56 -51.93 -0.39 -0.03 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.10 0.83 8.04 -51.93 -0.42 0.41 16 47 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 402.08 15.07 6.06 6.06 Total: -1.00 -33.20 402.08 -9.03 -42.23 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -7.86 Total: 14.70 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -2.13 Total: 2.58 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.29 Total: -55.84 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: 0.18 Total: -23.78 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.20 -9.03 -42.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483764057.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.134 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds