Wall clock time and date at job start Sat Apr 11 2020 06:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 119.99771 * 2 1 4 4 H 1.48496 * 109.47359 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47077 * 300.00267 * 3 2 1 6 6 H 1.48504 * 109.46947 * 59.99647 * 3 2 1 7 7 C 1.38941 * 120.00471 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00479 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99932 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00003 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00328 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00035 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47217 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00072 * 177.91111 * 13 12 10 15 15 C 1.52998 * 115.55148 * 294.31496 * 14 13 12 16 16 N 1.46499 * 109.46943 * 272.74637 * 15 14 13 17 17 C 1.34780 * 120.00506 * 174.94926 * 16 15 14 18 18 O 1.21281 * 119.99583 * 0.02562 * 17 16 15 19 19 C 1.50689 * 120.00458 * 180.02562 * 17 16 15 20 20 C 1.53008 * 109.47327 * 180.02562 * 19 17 16 21 21 C 1.52997 * 109.47047 * 179.97438 * 20 19 17 22 22 C 1.52998 * 109.47654 * 300.00213 * 21 20 19 23 23 F 1.39894 * 109.47343 * 180.02562 * 22 21 20 24 24 C 1.53000 * 109.47063 * 60.00058 * 22 21 20 25 25 C 1.53003 * 109.47300 * 300.00121 * 19 17 16 26 26 C 1.52998 * 117.49913 * 79.97993 * 14 13 12 27 27 C 1.52996 * 117.50100 * 148.64131 * 14 13 12 28 28 H 0.96998 * 120.00425 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00063 * 0.02562 * 9 7 2 30 30 H 1.09006 * 109.47008 * 59.99925 * 12 10 9 31 31 H 1.09000 * 109.47357 * 300.00062 * 12 10 9 32 32 H 1.00901 * 111.00006 * 301.86730 * 13 12 10 33 33 H 1.08992 * 109.47840 * 152.74660 * 15 14 13 34 34 H 1.09002 * 109.47250 * 32.74019 * 15 14 13 35 35 H 0.97004 * 119.99990 * 354.95369 * 16 15 14 36 36 H 1.09007 * 109.47385 * 60.00111 * 19 17 16 37 37 H 1.08995 * 109.46720 * 59.99913 * 20 19 17 38 38 H 1.08996 * 109.46509 * 299.99802 * 20 19 17 39 39 H 1.09004 * 109.47058 * 60.00472 * 21 20 19 40 40 H 1.08999 * 109.46715 * 179.97438 * 21 20 19 41 41 H 1.09007 * 109.46597 * 300.00291 * 22 21 20 42 42 H 1.08992 * 109.47409 * 60.00149 * 24 22 21 43 43 H 1.08999 * 109.46880 * 180.02562 * 24 22 21 44 44 H 1.09004 * 109.46774 * 60.00323 * 25 19 17 45 45 H 1.08995 * 109.47278 * 300.00412 * 25 19 17 46 46 H 1.09000 * 117.50355 * 215.00412 * 26 14 13 47 47 H 1.09002 * 117.49894 * 0.02562 * 26 14 13 48 48 H 1.09007 * 117.49784 * 359.97423 * 27 14 13 49 49 H 1.09001 * 117.50223 * 144.97590 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8891 2.3965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0888 -1.2032 -0.0001 9 7 1.3234 -2.3906 -0.0016 10 6 1.9974 -3.5577 -0.0016 11 8 3.2104 -3.5577 -0.0011 12 6 1.2440 -4.8629 -0.0022 13 7 2.1986 -5.9794 -0.0014 14 6 1.4991 -7.2702 0.0480 15 6 0.7192 -7.5492 1.3343 16 7 1.6094 -8.1656 2.3212 17 6 1.1657 -8.4081 3.5705 18 8 0.0293 -8.1164 3.8777 19 6 2.0816 -9.0416 4.5857 20 6 1.3368 -9.2061 5.9121 21 6 2.2666 -9.8499 6.9426 22 6 2.7166 -11.2219 6.4368 23 9 3.5662 -11.8108 7.3794 24 6 3.4614 -11.0574 5.1105 25 6 2.5316 -10.4139 4.0805 26 6 0.9191 -7.8100 -1.2609 27 6 2.1622 -8.4602 -0.6483 28 1 -0.4851 0.8400 -0.0004 29 1 0.3535 -2.3907 -0.0024 30 1 0.6176 -4.9205 -0.8925 31 1 0.6169 -4.9209 0.8875 32 1 2.8122 -5.9310 -0.8010 33 1 -0.1077 -8.2257 1.1185 34 1 0.3282 -6.6129 1.7326 35 1 2.5182 -8.3992 2.0754 36 1 2.9541 -8.4054 4.7350 37 1 0.4647 -9.8425 5.7625 38 1 1.0160 -8.2286 6.2722 39 1 3.1390 -9.2138 7.0923 40 1 1.7361 -9.9666 7.8876 41 1 1.8440 -11.8580 6.2872 42 1 4.3337 -10.4214 5.2601 43 1 3.7815 -12.0350 4.7500 44 1 3.0621 -10.2971 3.1355 45 1 1.6593 -11.0501 3.9312 46 1 -0.0180 -8.3640 -1.2056 47 1 1.0570 -7.2076 -2.1587 48 1 3.1174 -8.2853 -1.1436 49 1 2.0432 -9.4419 -0.1898 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483764057.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:48 Heat of formation + Delta-G solvation = -143.294632 kcal Electronic energy + Delta-G solvation = -29596.642567 eV Core-core repulsion = 25278.580370 eV Total energy + Delta-G solvation = -4318.062196 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.58090 -41.27281 -40.35243 -39.35123 -38.15429 -36.04458 -35.24551 -33.92628 -33.21527 -31.88136 -31.59911 -28.33521 -28.00116 -25.89721 -24.31291 -23.75026 -23.33460 -21.54629 -21.17208 -20.95756 -20.50412 -19.92997 -18.33809 -17.83559 -17.27230 -17.09588 -16.97275 -16.90172 -16.43623 -16.27286 -15.96027 -15.86119 -15.77854 -15.43687 -14.93148 -14.78151 -14.62320 -14.35002 -14.15573 -13.79463 -13.68404 -13.55784 -13.41189 -13.26444 -12.98747 -12.87912 -12.69189 -12.55949 -12.42881 -12.39892 -12.14695 -12.12694 -11.99636 -11.85017 -11.53314 -11.35944 -11.22485 -11.01114 -10.73601 -10.34464 -10.04928 -10.04044 -9.27330 -8.48805 -5.97977 1.35109 1.40477 1.54859 1.65642 2.01405 2.11828 2.26433 2.64208 3.03570 3.18305 3.42800 3.46812 3.52517 3.58983 3.61598 3.77239 3.86948 3.99501 4.02658 4.08055 4.21081 4.25638 4.29612 4.42041 4.43015 4.45333 4.50461 4.58379 4.67837 4.76783 4.77020 4.82936 4.89725 5.00171 5.05195 5.09973 5.10725 5.13021 5.22221 5.25496 5.38785 5.39044 5.47205 5.83974 6.04723 6.33723 6.56540 6.59928 7.09804 7.28103 7.52864 8.07364 8.68844 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.002115 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.519657 B =13232.754585 C =14376.469129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.080 0.920 9 N -0.574 5.574 10 C 0.439 3.561 11 O -0.621 6.621 12 C 0.067 3.933 13 N -0.638 5.638 14 C 0.020 3.980 15 C 0.168 3.832 16 N -0.707 5.707 17 C 0.513 3.487 18 O -0.588 6.588 19 C -0.106 4.106 20 C -0.093 4.093 21 C -0.140 4.140 22 C 0.084 3.916 23 F -0.230 7.230 24 C -0.138 4.138 25 C -0.099 4.099 26 C -0.200 4.200 27 C -0.142 4.142 28 H 0.278 0.722 29 H 0.395 0.605 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.351 0.649 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.414 0.586 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.075 0.925 46 H 0.112 0.888 47 H 0.093 0.907 48 H 0.105 0.895 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.042 -25.856 5.319 26.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.098 0.902 9 N -0.211 5.211 10 C 0.226 3.774 11 O -0.507 6.507 12 C -0.065 4.065 13 N -0.269 5.269 14 C -0.072 4.072 15 C 0.044 3.956 16 N -0.358 5.358 17 C 0.301 3.699 18 O -0.468 6.468 19 C -0.127 4.127 20 C -0.131 4.131 21 C -0.178 4.178 22 C 0.048 3.952 23 F -0.211 7.211 24 C -0.176 4.176 25 C -0.137 4.137 26 C -0.240 4.240 27 C -0.180 4.180 28 H 0.087 0.913 29 H 0.229 0.771 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.171 0.829 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.251 0.749 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.094 0.906 46 H 0.130 0.870 47 H 0.112 0.888 48 H 0.123 0.877 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.046 -25.447 6.230 26.278 hybrid contribution -0.254 1.229 -0.906 1.548 sum 1.792 -24.218 5.323 24.860 Atomic orbital electron populations 1.69680 1.06894 1.29284 1.50311 1.26078 0.96564 1.02544 0.96263 0.84855 0.78059 0.76987 0.78334 1.19657 1.19465 1.19719 1.19702 0.92706 0.83933 1.49865 0.90195 1.41952 1.09329 1.04814 1.64963 1.20801 0.88248 0.86050 0.82301 1.90488 1.15634 1.87949 1.56648 1.21457 0.94131 0.88190 1.02688 1.59788 1.18673 0.99016 1.49387 1.21798 1.02347 0.90146 0.92915 1.20616 0.91503 0.97593 0.85883 1.45886 1.17229 1.61936 1.10788 1.21125 0.87948 0.77750 0.83125 1.90693 1.21885 1.54351 1.79871 1.21437 0.98503 0.99040 0.93693 1.21204 0.97768 1.01409 0.92720 1.22093 1.00652 0.95715 0.99336 1.21806 0.92148 0.94321 0.86928 1.92783 1.74141 1.86035 1.68176 1.22075 0.98980 1.03176 0.93373 1.21440 1.00084 0.92955 0.99234 1.23699 0.99253 1.04616 0.96407 1.23275 0.97320 0.96037 1.01350 0.91281 0.77090 0.91446 0.88910 0.82901 0.90051 0.93273 0.74884 0.87175 0.91298 0.92086 0.90463 0.90230 0.88824 0.90165 0.89090 0.88696 0.90647 0.86978 0.88845 0.87711 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.29 13.05 21.66 0.28 -50.01 16 2 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 3 Si 0.99 43.21 29.55 68.60 2.03 45.24 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 8 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 9 N -0.57 -29.80 5.29 -306.99 -1.62 -31.42 16 10 C 0.44 20.91 7.82 87.66 0.69 21.60 16 11 O -0.62 -34.07 15.82 -3.08 -0.05 -34.12 16 12 C 0.07 2.32 6.03 85.56 0.52 2.83 16 13 N -0.64 -18.66 6.26 -474.15 -2.97 -21.63 16 14 C 0.02 0.42 1.90 3.53 0.01 0.42 16 15 C 0.17 3.72 5.75 86.38 0.50 4.21 16 16 N -0.71 -13.47 5.36 -463.08 -2.48 -15.95 16 17 C 0.51 11.34 7.15 87.65 0.63 11.97 16 18 O -0.59 -18.34 15.98 -3.03 -0.05 -18.38 16 19 C -0.11 -1.57 2.53 -11.54 -0.03 -1.60 16 20 C -0.09 -1.50 4.49 30.60 0.14 -1.37 16 21 C -0.14 -1.84 5.66 30.59 0.17 -1.66 16 22 C 0.08 1.01 3.87 30.59 0.12 1.13 16 23 F -0.23 -4.00 17.08 44.97 0.77 -3.23 16 24 C -0.14 -1.24 5.66 30.58 0.17 -1.07 16 25 C -0.10 -0.90 5.09 30.58 0.16 -0.74 16 26 C -0.20 -3.24 10.07 30.62 0.31 -2.93 16 27 C -0.14 -1.96 9.56 30.62 0.29 -1.67 16 28 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 30 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.09 3.13 6.55 -2.39 -0.02 3.11 16 32 H 0.35 10.52 8.38 -89.69 -0.75 9.77 16 33 H 0.08 1.62 7.89 -2.39 -0.02 1.61 16 34 H 0.05 1.41 6.46 -2.39 -0.02 1.39 16 35 H 0.41 5.97 7.59 -92.71 -0.70 5.27 16 36 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.07 1.18 8.10 -2.39 -0.02 1.16 16 38 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 39 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.09 0.55 7.56 -2.39 -0.02 0.54 16 45 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.11 1.53 8.04 -2.39 -0.02 1.51 16 47 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 49 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -73.57 402.08 -0.35 -73.92 By element: Atomic # 1 Polarization: 44.21 SS G_CDS: -1.20 Total: 43.01 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 4.94 Total: 12.59 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -6.79 Total: -119.01 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -0.10 Total: -52.51 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.77 Total: -3.23 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -73.57 -0.35 -73.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483764057.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.377 kcal (2) G-P(sol) polarization free energy of solvation -73.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds