Wall clock time and date at job start Sat Apr 11 2020 06:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 119.99785 * 2 1 4 4 H 1.48500 * 109.47238 * 270.00050 * 3 2 1 5 5 H 1.48504 * 109.47273 * 30.00316 * 3 2 1 6 6 H 1.48501 * 109.47086 * 149.99881 * 3 2 1 7 7 C 1.38948 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00757 * 0.02562 * 7 2 1 9 9 N 1.37105 * 119.99507 * 179.97438 * 7 2 1 10 10 C 1.34781 * 119.99477 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00540 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99626 * 179.97438 * 10 9 7 13 13 N 1.46893 * 109.47040 * 180.02562 * 12 10 9 14 14 C 1.46907 * 111.00103 * 180.02562 * 13 12 10 15 15 C 1.52992 * 115.54941 * 65.19236 * 14 13 12 16 16 N 1.46501 * 109.47209 * 80.50631 * 15 14 13 17 17 C 1.34773 * 120.00205 * 174.98497 * 16 15 14 18 18 O 1.21283 * 119.99994 * 0.02562 * 17 16 15 19 19 C 1.50707 * 120.00183 * 180.02562 * 17 16 15 20 20 F 1.39901 * 109.46946 * 54.99993 * 19 17 16 21 21 C 1.52999 * 109.46952 * 295.00118 * 19 17 16 22 22 C 1.52994 * 109.47077 * 179.97438 * 21 19 17 23 23 C 1.53001 * 109.47144 * 59.99930 * 22 21 19 24 24 C 1.52999 * 109.47191 * 300.00000 * 23 22 21 25 25 C 1.52992 * 109.47227 * 174.99914 * 19 17 16 26 26 C 1.53002 * 117.49525 * 279.52768 * 14 13 12 27 27 C 1.52994 * 117.49854 * 210.86650 * 14 13 12 28 28 H 0.96999 * 120.00662 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00167 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.47235 * 59.99726 * 12 10 9 31 31 H 1.09007 * 109.47182 * 300.00473 * 12 10 9 32 32 H 1.00894 * 111.00386 * 56.12494 * 13 12 10 33 33 H 1.09001 * 109.47232 * 200.50617 * 15 14 13 34 34 H 1.09006 * 109.47695 * 320.50756 * 15 14 13 35 35 H 0.97001 * 120.00097 * 354.99159 * 16 15 14 36 36 H 1.08996 * 109.47250 * 299.99971 * 21 19 17 37 37 H 1.09000 * 109.47068 * 60.00151 * 21 19 17 38 38 H 1.09004 * 109.47457 * 300.00065 * 22 21 19 39 39 H 1.08996 * 109.47720 * 180.02562 * 22 21 19 40 40 H 1.08999 * 109.47124 * 180.02562 * 23 22 21 41 41 H 1.08996 * 109.46857 * 60.00037 * 23 22 21 42 42 H 1.08999 * 109.47208 * 300.00328 * 24 23 22 43 43 H 1.09000 * 109.47068 * 179.97438 * 24 23 22 44 44 H 1.09005 * 109.47539 * 299.99934 * 25 19 17 45 45 H 1.09007 * 109.47294 * 60.00041 * 25 19 17 46 46 H 1.09002 * 117.50266 * 359.97438 * 26 14 13 47 47 H 1.08996 * 117.49753 * 145.02333 * 26 14 13 48 48 H 1.08993 * 117.49953 * 214.97441 * 27 14 13 49 49 H 1.09004 * 117.50291 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0014 9 7 3.3799 -1.2033 -0.0011 10 6 4.0537 -2.3705 -0.0011 11 8 3.4473 -3.4210 -0.0011 12 6 5.5608 -2.3705 -0.0022 13 7 6.0504 -3.7554 -0.0026 14 6 7.5190 -3.7946 -0.0031 15 6 8.1945 -3.2335 1.2497 16 7 8.1730 -4.2439 2.3102 17 6 8.8034 -4.0088 3.4779 18 8 9.3883 -2.9604 3.6510 19 6 8.7818 -5.0484 4.5687 20 9 9.2635 -6.2619 4.0660 21 6 7.3471 -5.2360 5.0661 22 6 7.3250 -6.2919 6.1730 23 6 8.2111 -5.8334 7.3330 24 6 9.6458 -5.6458 6.8356 25 6 9.6677 -4.5894 5.7285 26 6 8.2306 -3.5887 -1.3418 27 6 8.1938 -4.9778 -0.6998 28 1 -0.4851 0.8400 0.0004 29 1 3.8649 -0.3632 -0.0014 30 1 5.9248 -1.8562 0.8872 31 1 5.9234 -1.8569 -0.8927 32 1 5.6754 -4.2714 -0.7843 33 1 9.2269 -2.9708 1.0190 34 1 7.6593 -2.3446 1.5839 35 1 7.7050 -5.0823 2.1720 36 1 6.9718 -4.2906 5.4578 37 1 6.7160 -5.5631 4.2398 38 1 7.7001 -7.2373 5.7810 39 1 6.3029 -6.4259 6.5271 40 1 8.1957 -6.5859 8.1214 41 1 7.8360 -4.8881 7.7251 42 1 10.0209 -6.5911 6.4435 43 1 10.2769 -5.3188 7.6619 44 1 10.6899 -4.4557 5.3742 45 1 9.2925 -3.6439 6.1203 46 1 7.6092 -3.4246 -2.2222 47 1 9.1803 -3.0539 -1.3299 48 1 9.1192 -5.3562 -0.2659 49 1 7.5482 -5.7275 -1.1574 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483781926.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:51 Heat of formation + Delta-G solvation = -105.538451 kcal Electronic energy + Delta-G solvation = -30391.570682 eV Core-core repulsion = 26075.145717 eV Total energy + Delta-G solvation = -4316.424965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.18655 -40.16502 -39.05130 -38.05129 -37.50472 -34.48231 -34.07757 -32.77080 -31.67037 -31.27836 -31.07353 -27.50501 -26.78305 -23.94742 -23.87690 -23.09858 -22.60514 -20.72646 -20.10235 -19.77019 -19.42904 -18.39836 -17.93136 -16.76451 -16.54358 -16.25552 -15.82263 -15.47225 -15.37654 -15.03940 -14.88906 -14.60694 -14.50868 -14.11425 -13.91502 -13.80962 -13.76705 -13.10447 -12.94603 -12.78807 -12.67560 -12.61158 -12.45907 -12.36383 -12.21885 -12.14738 -11.75267 -11.73942 -11.43116 -11.25423 -11.06077 -10.97571 -10.92073 -10.61889 -10.42779 -10.42174 -10.00812 -9.85124 -9.61068 -9.26053 -8.61939 -8.25873 -8.20137 -6.34540 -3.86277 2.24275 2.70086 3.01079 3.04716 3.13362 3.49902 3.68144 3.93432 4.00563 4.07589 4.11380 4.27991 4.33047 4.34821 4.54092 4.71667 4.72275 4.76882 4.78388 4.90044 4.97988 5.10538 5.17883 5.24902 5.33857 5.41044 5.42895 5.45332 5.53328 5.62921 5.64931 5.67023 5.67452 5.71139 5.76303 5.77484 5.87102 5.87224 5.88830 5.89850 6.07299 6.17580 6.94291 7.23408 7.40349 7.53940 7.88173 8.10106 8.55345 8.90835 9.38371 9.77437 10.78425 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.011558 B = 0.002668 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.903396 B =10492.213098 C =11638.518065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.588 5.588 10 C 0.449 3.551 11 O -0.566 6.566 12 C 0.047 3.953 13 N -0.626 5.626 14 C 0.034 3.966 15 C 0.165 3.835 16 N -0.705 5.705 17 C 0.499 3.501 18 O -0.529 6.529 19 C 0.113 3.887 20 F -0.193 7.193 21 C -0.140 4.140 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.123 4.123 26 C -0.205 4.205 27 C -0.163 4.163 28 H 0.274 0.726 29 H 0.371 0.629 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.357 0.643 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.410 0.590 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.101 0.899 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.943 -9.616 8.220 25.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.228 5.228 10 C 0.235 3.765 11 O -0.448 6.448 12 C -0.086 4.086 13 N -0.258 5.258 14 C -0.060 4.060 15 C 0.042 3.958 16 N -0.356 5.356 17 C 0.283 3.717 18 O -0.406 6.406 19 C 0.091 3.909 20 F -0.174 7.174 21 C -0.178 4.178 22 C -0.156 4.156 23 C -0.161 4.161 24 C -0.158 4.158 25 C -0.161 4.161 26 C -0.245 4.245 27 C -0.201 4.201 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.178 0.822 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.245 0.755 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.107 0.893 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.119 0.881 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 21.647 -9.537 9.002 25.310 hybrid contribution 0.467 1.272 -1.191 1.804 sum 22.114 -8.265 7.812 24.867 Atomic orbital electron populations 1.69618 1.05654 1.27571 1.49151 1.25040 0.95496 0.98003 0.97552 0.86681 0.79862 0.84026 0.78906 1.19614 1.20098 1.19424 1.19425 0.79177 0.96639 1.48209 0.86261 1.42201 1.07566 1.06152 1.66856 1.19640 0.88027 0.84619 0.84211 1.90568 1.69411 1.30886 1.53918 1.21730 0.95006 0.90190 1.01643 1.59872 1.02197 1.12851 1.50840 1.21852 0.88324 1.03605 0.92181 1.20773 0.99767 0.90964 0.84330 1.45881 1.53965 1.21359 1.14352 1.20818 0.79080 0.88503 0.83335 1.90726 1.43316 1.26523 1.80013 1.21174 0.97086 0.79847 0.92762 1.92882 1.89675 1.46045 1.88750 1.22157 0.93098 1.02039 1.00502 1.21507 1.00716 0.98390 0.95013 1.21600 0.94955 1.01791 0.97771 1.21564 0.97307 0.99177 0.97793 1.21907 1.00156 1.00130 0.93889 1.23656 1.03403 1.00124 0.97333 1.23163 1.02405 0.91611 1.02888 0.91559 0.79652 0.89371 0.93274 0.82250 0.90548 0.90469 0.75455 0.89358 0.89774 0.91089 0.90787 0.91487 0.91596 0.91273 0.91098 0.90249 0.89260 0.88292 0.88378 0.88063 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.55 13.96 55.50 0.77 -24.78 16 2 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 3 Si 0.88 19.26 27.73 -169.99 -4.71 14.55 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 7 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 9 N -0.59 -13.82 5.09 -10.96 -0.06 -13.87 16 10 C 0.45 9.92 7.82 -10.98 -0.09 9.83 16 11 O -0.57 -14.76 15.78 5.55 0.09 -14.67 16 12 C 0.05 0.74 6.00 -4.98 -0.03 0.71 16 13 N -0.63 -8.88 6.29 -101.22 -0.64 -9.52 16 14 C 0.03 0.37 1.80 -131.60 -0.24 0.13 16 15 C 0.17 1.87 5.68 -4.04 -0.02 1.85 16 16 N -0.70 -7.85 5.47 -60.29 -0.33 -8.18 16 17 C 0.50 6.10 6.82 -10.98 -0.07 6.03 16 18 O -0.53 -7.98 15.98 5.55 0.09 -7.89 16 19 C 0.11 1.14 1.05 -91.77 -0.10 1.04 16 20 F -0.19 -2.04 15.75 2.25 0.04 -2.01 16 21 C -0.14 -1.27 4.95 -26.73 -0.13 -1.40 16 22 C -0.12 -0.91 5.80 -26.73 -0.16 -1.07 16 23 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 24 C -0.12 -0.89 5.80 -26.71 -0.15 -1.04 16 25 C -0.12 -1.13 4.30 -26.71 -0.11 -1.25 16 26 C -0.20 -1.90 10.07 -26.69 -0.27 -2.17 16 27 C -0.16 -1.47 9.97 -26.69 -0.27 -1.73 16 28 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.37 7.67 5.76 -40.82 -0.24 7.44 16 30 H 0.09 1.31 6.63 -51.93 -0.34 0.97 16 31 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 32 H 0.36 5.25 8.31 -39.29 -0.33 4.92 16 33 H 0.08 0.83 7.94 -51.93 -0.41 0.41 16 34 H 0.08 0.98 6.52 -51.93 -0.34 0.64 16 35 H 0.41 4.23 8.26 -40.82 -0.34 3.89 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 38 H 0.07 0.56 7.80 -51.93 -0.41 0.15 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.53 7.80 -51.93 -0.41 0.12 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 0.85 8.05 -51.92 -0.42 0.43 16 46 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 48 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 398.61 15.07 6.01 6.01 Total: -1.00 -32.88 398.61 -8.62 -41.50 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -7.84 Total: 16.60 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -2.04 Total: 2.25 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.25 Total: -56.35 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: 0.18 Total: -22.56 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.55 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.88 -8.62 -41.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483781926.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.036 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds