Wall clock time and date at job start Sat Apr 11 2020 06:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 119.99785 * 2 1 4 4 H 1.48500 * 109.47238 * 270.00050 * 3 2 1 5 5 H 1.48504 * 109.47273 * 30.00316 * 3 2 1 6 6 H 1.48501 * 109.47086 * 149.99881 * 3 2 1 7 7 C 1.38948 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00757 * 0.02562 * 7 2 1 9 9 N 1.37105 * 119.99507 * 179.97438 * 7 2 1 10 10 C 1.34781 * 119.99477 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00540 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99626 * 179.97438 * 10 9 7 13 13 N 1.46893 * 109.47040 * 180.02562 * 12 10 9 14 14 C 1.46907 * 111.00103 * 180.02562 * 13 12 10 15 15 C 1.52992 * 115.54941 * 65.19236 * 14 13 12 16 16 N 1.46501 * 109.47209 * 80.50631 * 15 14 13 17 17 C 1.34773 * 120.00205 * 174.98497 * 16 15 14 18 18 O 1.21283 * 119.99994 * 0.02562 * 17 16 15 19 19 C 1.50707 * 120.00183 * 180.02562 * 17 16 15 20 20 F 1.39901 * 109.46946 * 54.99993 * 19 17 16 21 21 C 1.52999 * 109.46952 * 295.00118 * 19 17 16 22 22 C 1.52994 * 109.47077 * 179.97438 * 21 19 17 23 23 C 1.53001 * 109.47144 * 59.99930 * 22 21 19 24 24 C 1.52999 * 109.47191 * 300.00000 * 23 22 21 25 25 C 1.52992 * 109.47227 * 174.99914 * 19 17 16 26 26 C 1.53002 * 117.49525 * 279.52768 * 14 13 12 27 27 C 1.52994 * 117.49854 * 210.86650 * 14 13 12 28 28 H 0.96999 * 120.00662 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00167 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.47235 * 59.99726 * 12 10 9 31 31 H 1.09007 * 109.47182 * 300.00473 * 12 10 9 32 32 H 1.00894 * 111.00386 * 56.12494 * 13 12 10 33 33 H 1.09001 * 109.47232 * 200.50617 * 15 14 13 34 34 H 1.09006 * 109.47695 * 320.50756 * 15 14 13 35 35 H 0.97001 * 120.00097 * 354.99159 * 16 15 14 36 36 H 1.08996 * 109.47250 * 299.99971 * 21 19 17 37 37 H 1.09000 * 109.47068 * 60.00151 * 21 19 17 38 38 H 1.09004 * 109.47457 * 300.00065 * 22 21 19 39 39 H 1.08996 * 109.47720 * 180.02562 * 22 21 19 40 40 H 1.08999 * 109.47124 * 180.02562 * 23 22 21 41 41 H 1.08996 * 109.46857 * 60.00037 * 23 22 21 42 42 H 1.08999 * 109.47208 * 300.00328 * 24 23 22 43 43 H 1.09000 * 109.47068 * 179.97438 * 24 23 22 44 44 H 1.09005 * 109.47539 * 299.99934 * 25 19 17 45 45 H 1.09007 * 109.47294 * 60.00041 * 25 19 17 46 46 H 1.09002 * 117.50266 * 359.97438 * 26 14 13 47 47 H 1.08996 * 117.49753 * 145.02333 * 26 14 13 48 48 H 1.08993 * 117.49953 * 214.97441 * 27 14 13 49 49 H 1.09004 * 117.50291 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0014 9 7 3.3799 -1.2033 -0.0011 10 6 4.0537 -2.3705 -0.0011 11 8 3.4473 -3.4210 -0.0011 12 6 5.5608 -2.3705 -0.0022 13 7 6.0504 -3.7554 -0.0026 14 6 7.5190 -3.7946 -0.0031 15 6 8.1945 -3.2335 1.2497 16 7 8.1730 -4.2439 2.3102 17 6 8.8034 -4.0088 3.4779 18 8 9.3883 -2.9604 3.6510 19 6 8.7818 -5.0484 4.5687 20 9 9.2635 -6.2619 4.0660 21 6 7.3471 -5.2360 5.0661 22 6 7.3250 -6.2919 6.1730 23 6 8.2111 -5.8334 7.3330 24 6 9.6458 -5.6458 6.8356 25 6 9.6677 -4.5894 5.7285 26 6 8.2306 -3.5887 -1.3418 27 6 8.1938 -4.9778 -0.6998 28 1 -0.4851 0.8400 0.0004 29 1 3.8649 -0.3632 -0.0014 30 1 5.9248 -1.8562 0.8872 31 1 5.9234 -1.8569 -0.8927 32 1 5.6754 -4.2714 -0.7843 33 1 9.2269 -2.9708 1.0190 34 1 7.6593 -2.3446 1.5839 35 1 7.7050 -5.0823 2.1720 36 1 6.9718 -4.2906 5.4578 37 1 6.7160 -5.5631 4.2398 38 1 7.7001 -7.2373 5.7810 39 1 6.3029 -6.4259 6.5271 40 1 8.1957 -6.5859 8.1214 41 1 7.8360 -4.8881 7.7251 42 1 10.0209 -6.5911 6.4435 43 1 10.2769 -5.3188 7.6619 44 1 10.6899 -4.4557 5.3742 45 1 9.2925 -3.6439 6.1203 46 1 7.6092 -3.4246 -2.2222 47 1 9.1803 -3.0539 -1.3299 48 1 9.1192 -5.3562 -0.2659 49 1 7.5482 -5.7275 -1.1574 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483781926.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:51 Heat of formation + Delta-G solvation = -130.101235 kcal Electronic energy + Delta-G solvation = -30392.635804 eV Core-core repulsion = 26075.145717 eV Total energy + Delta-G solvation = -4317.490088 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.01772 -41.12131 -40.41696 -39.36698 -38.24823 -36.08424 -35.39743 -34.03482 -33.66277 -31.96810 -31.78313 -28.51783 -28.23306 -25.69397 -24.63978 -23.76819 -23.36141 -21.55564 -21.31669 -20.92938 -20.57253 -20.29372 -18.82133 -17.93926 -17.57469 -17.21750 -16.97332 -16.75397 -16.58075 -16.25201 -15.80030 -15.71993 -15.49982 -15.41270 -15.14587 -14.73945 -14.51070 -14.45341 -14.27461 -14.13639 -13.89222 -13.64117 -13.51432 -13.30272 -13.20041 -13.00917 -12.94610 -12.82738 -12.43862 -12.43578 -12.11489 -12.00839 -11.92800 -11.71143 -11.53174 -11.51917 -11.25654 -11.08818 -10.76864 -10.43620 -10.26902 -10.20056 -9.31204 -8.43065 -6.03910 1.29021 1.29423 1.33407 1.42683 1.83965 1.92140 2.21017 2.49991 2.87978 3.13381 3.20928 3.27529 3.36155 3.49253 3.55243 3.60166 3.72949 3.96299 4.08162 4.10999 4.11494 4.23669 4.33544 4.39351 4.43894 4.44010 4.52601 4.58369 4.62432 4.72718 4.74954 4.80760 4.94888 4.97640 5.00781 5.12650 5.13710 5.18287 5.25284 5.27756 5.28938 5.47859 5.50368 5.85290 5.97456 6.26130 6.34569 6.56973 6.85664 6.95469 7.37134 7.92562 8.74421 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.011558 B = 0.002668 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.903396 B =10492.213098 C =11638.518065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.962 3.038 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.234 1.234 7 C -0.328 4.328 8 H 0.057 0.943 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.611 6.611 12 C 0.062 3.938 13 N -0.640 5.640 14 C 0.022 3.978 15 C 0.166 3.834 16 N -0.699 5.699 17 C 0.495 3.505 18 O -0.561 6.561 19 C 0.116 3.884 20 F -0.195 7.195 21 C -0.140 4.140 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.122 4.122 26 C -0.191 4.191 27 C -0.151 4.151 28 H 0.279 0.721 29 H 0.389 0.611 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.352 0.648 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.414 0.586 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.113 0.887 48 H 0.113 0.887 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.951 -8.691 8.409 27.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.212 4.212 3 Si 0.782 3.218 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.158 1.158 7 C -0.457 4.457 8 H 0.075 0.925 9 N -0.232 5.232 10 C 0.238 3.762 11 O -0.496 6.496 12 C -0.070 4.070 13 N -0.271 5.271 14 C -0.070 4.070 15 C 0.043 3.957 16 N -0.349 5.349 17 C 0.280 3.720 18 O -0.440 6.440 19 C 0.095 3.905 20 F -0.176 7.176 21 C -0.178 4.178 22 C -0.155 4.155 23 C -0.160 4.160 24 C -0.154 4.154 25 C -0.161 4.161 26 C -0.231 4.231 27 C -0.188 4.188 28 H 0.089 0.911 29 H 0.224 0.776 30 H 0.123 0.877 31 H 0.097 0.903 32 H 0.173 0.827 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.250 0.750 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.090 0.910 45 H 0.103 0.897 46 H 0.118 0.882 47 H 0.132 0.868 48 H 0.131 0.869 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 24.683 -8.642 9.182 27.717 hybrid contribution -0.502 0.828 -1.282 1.607 sum 24.181 -7.814 7.900 26.611 Atomic orbital electron populations 1.69795 1.08078 1.29261 1.50220 1.26078 0.96438 1.02603 0.96082 0.85407 0.79449 0.76969 0.79993 1.17996 1.20011 1.15752 1.19004 0.81403 0.94957 1.50334 0.92461 1.42041 1.05882 1.07600 1.67690 1.20859 0.90731 0.83356 0.81241 1.90546 1.71313 1.32606 1.55107 1.21587 0.89613 0.91996 1.03765 1.59817 1.04499 1.11726 1.51056 1.21758 0.86322 1.05980 0.92977 1.20775 1.00071 0.90499 0.84389 1.45915 1.53373 1.21460 1.14175 1.21204 0.78515 0.88506 0.83814 1.90704 1.44764 1.27881 1.80636 1.21176 0.97904 0.79166 0.92281 1.92875 1.89770 1.46093 1.88822 1.22168 0.92261 1.02410 1.00919 1.21520 1.01399 0.97762 0.94803 1.21612 0.94353 1.02303 0.97733 1.21560 0.97943 0.98407 0.97503 1.21918 0.99413 1.00594 0.94132 1.23702 1.03532 1.00090 0.95815 1.23230 1.02361 0.91442 1.01812 0.91110 0.77572 0.87732 0.90259 0.82745 0.89674 0.91761 0.74992 0.89708 0.90206 0.91131 0.90130 0.90053 0.91482 0.91385 0.89703 0.90982 0.89741 0.88249 0.86839 0.86896 0.87827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.02 13.96 21.66 0.30 -55.72 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 3 Si 0.96 38.76 27.73 68.60 1.90 40.66 16 4 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 5 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.23 -8.05 6.52 99.48 0.65 -7.40 16 7 C -0.33 -19.06 10.16 84.04 0.85 -18.21 16 8 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 9 N -0.59 -27.59 5.09 -306.97 -1.56 -29.16 16 10 C 0.45 19.87 7.82 87.66 0.69 20.55 16 11 O -0.61 -32.97 15.78 -3.06 -0.05 -33.01 16 12 C 0.06 1.85 6.00 85.56 0.51 2.36 16 13 N -0.64 -17.22 6.29 -474.15 -2.98 -20.21 16 14 C 0.02 0.43 1.80 3.52 0.01 0.44 16 15 C 0.17 3.45 5.68 86.38 0.49 3.94 16 16 N -0.70 -14.77 5.47 -463.06 -2.53 -17.30 16 17 C 0.50 11.76 6.82 87.66 0.60 12.36 16 18 O -0.56 -16.63 15.98 -3.04 -0.05 -16.68 16 19 C 0.12 2.26 1.05 -11.54 -0.01 2.25 16 20 F -0.19 -3.93 15.75 44.97 0.71 -3.22 16 21 C -0.14 -2.44 4.95 30.59 0.15 -2.29 16 22 C -0.12 -1.66 5.80 30.59 0.18 -1.48 16 23 C -0.12 -1.48 5.92 30.59 0.18 -1.30 16 24 C -0.12 -1.53 5.80 30.61 0.18 -1.35 16 25 C -0.12 -2.16 4.30 30.61 0.13 -2.03 16 26 C -0.19 -2.93 10.07 30.62 0.31 -2.62 16 27 C -0.15 -2.32 9.97 30.62 0.31 -2.01 16 28 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 29 H 0.39 15.17 5.76 -92.71 -0.53 14.63 16 30 H 0.10 2.84 6.63 -2.38 -0.02 2.82 16 31 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.35 10.04 8.31 -89.70 -0.74 9.30 16 33 H 0.09 1.64 7.94 -2.39 -0.02 1.62 16 34 H 0.06 1.51 6.52 -2.38 -0.02 1.50 16 35 H 0.41 8.09 8.26 -92.71 -0.77 7.32 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.44 7.92 -2.39 -0.02 1.42 16 38 H 0.07 1.01 7.80 -2.38 -0.02 0.99 16 39 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 0.92 7.80 -2.39 -0.02 0.90 16 43 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 45 H 0.08 1.56 8.05 -2.38 -0.02 1.54 16 46 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.11 1.44 8.08 -2.39 -0.02 1.42 16 48 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -75.89 398.61 -0.34 -76.23 By element: Atomic # 1 Polarization: 49.18 SS G_CDS: -1.11 Total: 48.06 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 5.04 Total: 10.35 kcal Atomic # 7 Polarization: -115.61 SS G_CDS: -6.78 Total: -122.39 kcal Atomic # 8 Polarization: -49.60 SS G_CDS: -0.10 Total: -49.69 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.71 Total: -3.22 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 1.90 Total: 40.66 kcal Total: -75.89 -0.34 -76.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483781926.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.872 kcal (2) G-P(sol) polarization free energy of solvation -75.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds