Wall clock time and date at job start Sat Apr 11 2020 06:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99772 * 2 1 4 4 H 1.48505 * 109.47033 * 90.00203 * 3 2 1 5 5 H 1.48493 * 109.47135 * 330.00219 * 3 2 1 6 6 H 1.48497 * 109.47031 * 209.99954 * 3 2 1 7 7 C 1.38811 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99611 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00058 * 179.97438 * 7 2 1 10 10 C 1.46507 * 119.99885 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47067 * 187.05235 * 10 9 7 12 12 H 1.08995 * 109.86958 * 314.86833 * 11 10 9 13 13 C 1.54328 * 109.88003 * 193.85630 * 11 10 9 14 14 C 1.55396 * 102.82507 * 218.48144 * 13 11 10 15 15 C 1.54910 * 101.67031 * 35.33458 * 14 13 11 16 16 N 1.47013 * 109.88491 * 75.88448 * 11 10 9 17 17 C 1.34782 * 125.65124 * 298.39669 * 16 11 10 18 18 O 1.21596 * 119.99787 * 4.66045 * 17 16 11 19 19 C 1.47524 * 120.00073 * 184.66359 * 17 16 11 20 20 C 1.39792 * 120.06695 * 336.24202 * 19 17 16 21 21 C 1.37612 * 119.92773 * 179.79046 * 20 19 17 22 22 C 1.39219 * 120.06643 * 0.46316 * 21 20 19 23 23 N 1.39055 * 119.92839 * 179.76632 * 22 21 20 24 24 C 1.48227 * 110.99931 * 119.92658 * 23 22 21 25 25 C 1.51120 * 105.35992 * 144.89826 * 24 23 22 26 26 C 1.30963 * 109.45612 * 343.02417 * 25 24 23 27 27 C 1.48219 * 110.99962 * 233.56751 * 23 22 21 28 28 C 1.39212 * 120.13913 * 359.78794 * 22 21 20 29 29 C 1.37611 * 120.07335 * 359.97438 * 28 22 21 30 30 H 0.96997 * 120.00012 * 359.97438 * 1 2 3 31 31 H 0.96994 * 120.00251 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.47034 * 307.05078 * 10 9 7 33 33 H 1.09000 * 109.47096 * 67.04880 * 10 9 7 34 34 H 1.09002 * 110.71853 * 336.74737 * 13 11 10 35 35 H 1.08997 * 110.71683 * 100.02672 * 13 11 10 36 36 H 1.09005 * 110.88752 * 277.26733 * 14 13 11 37 37 H 1.09003 * 111.07531 * 153.48795 * 14 13 11 38 38 H 1.09000 * 110.36832 * 204.23406 * 15 14 13 39 39 H 1.09006 * 110.36335 * 81.91294 * 15 14 13 40 40 H 1.07999 * 120.04030 * 359.97438 * 20 19 17 41 41 H 1.07996 * 119.96549 * 180.22965 * 21 20 19 42 42 H 1.08997 * 110.27147 * 263.87398 * 24 23 22 43 43 H 1.08998 * 110.26648 * 25.92785 * 24 23 22 44 44 H 1.08001 * 125.27094 * 163.00636 * 25 24 23 45 45 H 1.08001 * 125.26923 * 179.97438 * 26 25 24 46 46 H 1.09010 * 110.26799 * 334.06960 * 27 23 22 47 47 H 1.09001 * 110.27071 * 96.12374 * 27 23 22 48 48 H 1.08000 * 119.96641 * 179.97438 * 28 22 21 49 49 H 1.07994 * 120.03865 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4001 5 1 1.4475 2.6527 -0.7000 6 1 3.5476 1.4403 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2020 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 6 5.6071 -2.1966 0.1754 12 1 5.9122 -1.3756 -0.4734 13 6 6.4172 -3.4648 -0.1665 14 6 7.5502 -3.4475 0.8969 15 6 6.8140 -2.8663 2.1298 16 7 5.8912 -1.8579 1.5775 17 6 5.3904 -0.8010 2.2474 18 8 4.5684 -0.0789 1.7168 19 6 5.8396 -0.5202 3.6243 20 6 6.3639 -1.5482 4.4133 21 6 6.7860 -1.2822 5.6958 22 6 6.6823 0.0071 6.2109 23 7 7.1053 0.2716 7.5089 24 6 8.1854 1.2866 7.5191 25 6 7.9595 2.0990 8.7732 26 6 6.7422 1.8957 9.2112 27 6 6.0323 0.9269 8.2939 28 6 6.1558 1.0318 5.4294 29 6 5.7365 0.7732 4.1445 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3620 -0.0007 32 1 3.7579 -3.0949 0.8194 33 1 3.9465 -2.9860 -0.9472 34 1 5.8007 -4.3572 -0.0579 35 1 6.8291 -3.3994 -1.1735 36 1 8.3657 -2.7947 0.5853 37 1 7.9142 -4.4550 1.0983 38 1 7.5250 -2.3978 2.8102 39 1 6.2565 -3.6500 2.6429 40 1 6.4404 -2.5495 4.0158 41 1 7.1946 -2.0751 6.3046 42 1 9.1603 0.8004 7.5547 43 1 8.1127 1.9242 6.6380 44 1 8.6890 2.7466 9.2366 45 1 6.3123 2.3496 10.0919 46 1 5.3533 1.4633 7.6310 47 1 5.4851 0.1864 8.8772 48 1 6.0763 2.0308 5.8320 49 1 5.3277 1.5685 3.5389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483945422.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:54 Heat of formation + Delta-G solvation = 91.401077 kcal Electronic energy + Delta-G solvation = -30070.524552 eV Core-core repulsion = 26193.408751 eV Total energy + Delta-G solvation = -3877.115802 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.97028 -40.11175 -38.10414 -36.98351 -34.49760 -33.20559 -31.84779 -31.32373 -31.00102 -29.33842 -28.78719 -28.64493 -25.41498 -24.30643 -23.17076 -22.78728 -21.60515 -21.05357 -20.88017 -19.76880 -19.20089 -17.80786 -17.55353 -16.92449 -16.52995 -16.01347 -15.47153 -14.88499 -14.55392 -14.39815 -14.33773 -14.03728 -13.92128 -13.70893 -13.37370 -13.31411 -13.13044 -13.05332 -12.72997 -12.65721 -12.45212 -12.29453 -12.11494 -11.85447 -11.69284 -11.66077 -11.55654 -11.44781 -10.87595 -10.74436 -10.56537 -10.34268 -10.01985 -9.93292 -9.53364 -9.15181 -9.13009 -8.80643 -8.71243 -8.64227 -8.32728 -6.87927 -5.52542 -2.82724 0.72237 1.24408 1.75777 2.96681 3.13426 3.51211 3.63027 3.69556 3.76423 3.78678 4.28166 4.44283 4.44820 4.45553 4.68164 4.78101 4.84780 4.88700 4.90486 5.00991 5.11106 5.13146 5.14858 5.21706 5.24476 5.30889 5.35999 5.41351 5.44590 5.56405 5.65317 5.72244 5.78488 5.88089 5.89651 5.91744 5.94902 6.00595 6.04706 6.09889 6.23166 6.26091 6.28553 6.36656 6.42569 6.52694 6.73992 6.88269 7.06419 7.76699 8.22729 8.55661 8.69741 9.56163 10.28826 10.50687 11.66340 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010988 B = 0.003509 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.692835 B = 7976.753457 C = 9933.151542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.305 1.305 6 H -0.282 1.282 7 C -0.231 4.231 8 H 0.081 0.919 9 N -0.744 5.744 10 C 0.151 3.849 11 C 0.126 3.874 12 H 0.073 0.927 13 C -0.123 4.123 14 C -0.134 4.134 15 C 0.089 3.911 16 N -0.610 5.610 17 C 0.560 3.440 18 O -0.484 6.484 19 C -0.116 4.116 20 C -0.100 4.100 21 C -0.100 4.100 22 C 0.090 3.910 23 N -0.470 5.470 24 C 0.055 3.945 25 C -0.170 4.170 26 C -0.165 4.165 27 C 0.051 3.949 28 C -0.158 4.158 29 C -0.052 4.052 30 H 0.255 0.745 31 H 0.377 0.623 32 H 0.027 0.973 33 H 0.026 0.974 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.148 0.852 41 H 0.134 0.866 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.068 0.932 47 H 0.092 0.908 48 H 0.125 0.875 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.414 -3.063 15.358 28.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.193 4.193 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.232 1.232 6 H -0.209 1.209 7 C -0.361 4.361 8 H 0.099 0.901 9 N -0.395 5.395 10 C 0.022 3.978 11 C 0.023 3.977 12 H 0.092 0.908 13 C -0.162 4.162 14 C -0.172 4.172 15 C -0.034 4.034 16 N -0.346 5.346 17 C 0.348 3.652 18 O -0.357 6.357 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.004 4.004 23 N -0.191 5.191 24 C -0.071 4.071 25 C -0.189 4.189 26 C -0.184 4.184 27 C -0.075 4.075 28 C -0.178 4.178 29 C -0.071 4.071 30 H 0.065 0.935 31 H 0.216 0.784 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.165 0.835 41 H 0.152 0.848 42 H 0.108 0.892 43 H 0.083 0.917 44 H 0.155 0.845 45 H 0.156 0.844 46 H 0.086 0.914 47 H 0.110 0.890 48 H 0.143 0.857 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 22.877 -3.172 15.331 27.721 hybrid contribution 0.163 1.934 -0.153 1.947 sum 23.040 -1.237 15.178 27.618 Atomic orbital electron populations 1.69738 1.05209 1.25462 1.58978 1.24573 0.95082 0.97312 1.02329 0.86233 0.78307 0.84214 0.77782 1.20967 1.23245 1.20869 1.19011 0.81182 0.94231 1.41662 0.90068 1.43062 1.03854 1.02555 1.90073 1.20947 0.88024 0.90586 0.98251 1.21972 0.97001 0.96868 0.81843 0.90846 1.22679 0.96499 0.97647 0.99376 1.22849 0.97764 1.01525 0.95079 1.22737 0.92354 0.91410 0.96906 1.48340 1.47533 1.25849 1.12856 1.17863 0.81382 0.80642 0.85270 1.90793 1.29657 1.47404 1.67865 1.20049 1.02265 0.94798 0.94781 1.21994 0.96150 0.99950 0.93778 1.20882 1.00490 0.95563 0.94949 1.19123 0.97917 0.93935 0.89451 1.63109 1.07390 1.38746 1.09871 1.22216 0.96411 0.91883 0.96587 1.23568 0.97886 1.00303 0.97104 1.23593 0.96114 0.98993 0.99663 1.22275 0.93970 0.95852 0.95424 1.21545 1.01820 0.99469 0.94972 1.21133 0.95115 0.96171 0.94701 0.93548 0.78352 0.95492 0.95602 0.90076 0.89974 0.90707 0.89886 0.89838 0.91064 0.83472 0.84821 0.89192 0.91709 0.84454 0.84406 0.91372 0.89021 0.85726 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -32.14 13.97 55.49 0.78 -31.36 16 2 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 3 Si 0.90 25.92 26.62 -169.99 -4.52 21.39 16 4 H -0.28 -8.20 7.11 56.52 0.40 -7.80 16 5 H -0.30 -8.66 7.11 56.52 0.40 -8.26 16 6 H -0.28 -7.86 6.52 56.52 0.37 -7.49 16 7 C -0.23 -7.22 10.47 -15.06 -0.16 -7.37 16 8 H 0.08 2.68 8.06 -52.49 -0.42 2.25 16 9 N -0.74 -19.91 3.90 -59.90 -0.23 -20.15 16 10 C 0.15 3.15 5.61 -4.04 -0.02 3.13 16 11 C 0.13 2.03 3.07 -66.95 -0.21 1.82 16 12 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 13 C -0.12 -1.34 6.46 -24.76 -0.16 -1.50 16 14 C -0.13 -1.13 7.09 -24.45 -0.17 -1.30 16 15 C 0.09 0.91 5.01 -2.53 -0.01 0.90 16 16 N -0.61 -9.44 3.07 -164.23 -0.50 -9.94 16 17 C 0.56 10.41 7.49 -12.47 -0.09 10.32 16 18 O -0.48 -11.52 11.58 5.28 0.06 -11.46 16 19 C -0.12 -1.77 5.77 -104.95 -0.61 -2.37 16 20 C -0.10 -1.19 7.97 -39.23 -0.31 -1.50 16 21 C -0.10 -1.09 9.95 -39.45 -0.39 -1.48 16 22 C 0.09 1.03 4.90 -83.86 -0.41 0.62 16 23 N -0.47 -4.78 5.56 -171.17 -0.95 -5.73 16 24 C 0.05 0.47 6.46 -4.04 -0.03 0.44 16 25 C -0.17 -1.24 10.95 -35.81 -0.39 -1.63 16 26 C -0.17 -1.25 10.95 -35.81 -0.39 -1.64 16 27 C 0.05 0.47 6.43 -4.04 -0.03 0.44 16 28 C -0.16 -1.94 7.65 -39.45 -0.30 -2.24 16 29 C -0.05 -0.77 9.58 -39.23 -0.38 -1.14 16 30 H 0.25 8.27 8.31 -40.82 -0.34 7.94 16 31 H 0.38 10.28 3.18 -40.82 -0.13 10.15 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.03 0.53 8.08 -51.93 -0.42 0.11 16 34 H 0.08 0.85 7.85 -51.93 -0.41 0.44 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.74 5.85 -51.93 -0.30 0.43 16 39 H 0.07 0.67 7.42 -51.93 -0.39 0.28 16 40 H 0.15 1.45 4.19 -52.49 -0.22 1.23 16 41 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.57 6.73 -51.93 -0.35 0.22 16 44 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 45 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.07 0.67 6.28 -51.92 -0.33 0.35 16 47 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.12 1.35 7.01 -52.49 -0.37 0.98 16 49 H 0.14 2.15 7.82 -52.49 -0.41 1.74 16 LS Contribution 378.65 15.07 5.71 5.71 Total: -1.00 -38.81 378.65 -10.97 -49.78 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -7.14 Total: 6.32 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -4.16 Total: -4.56 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -0.91 Total: -67.18 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.06 Total: -11.46 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -4.52 Total: 21.39 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.81 -10.97 -49.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483945422.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.179 kcal (2) G-P(sol) polarization free energy of solvation -38.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds