Wall clock time and date at job start Sat Apr 11 2020 06:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99772 * 2 1 4 4 H 1.48505 * 109.47033 * 90.00203 * 3 2 1 5 5 H 1.48493 * 109.47135 * 330.00219 * 3 2 1 6 6 H 1.48497 * 109.47031 * 209.99954 * 3 2 1 7 7 C 1.38811 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99611 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00058 * 179.97438 * 7 2 1 10 10 C 1.46507 * 119.99885 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47067 * 187.05235 * 10 9 7 12 12 H 1.08995 * 109.86958 * 314.86833 * 11 10 9 13 13 C 1.54328 * 109.88003 * 193.85630 * 11 10 9 14 14 C 1.55396 * 102.82507 * 218.48144 * 13 11 10 15 15 C 1.54910 * 101.67031 * 35.33458 * 14 13 11 16 16 N 1.47013 * 109.88491 * 75.88448 * 11 10 9 17 17 C 1.34782 * 125.65124 * 298.39669 * 16 11 10 18 18 O 1.21596 * 119.99787 * 4.66045 * 17 16 11 19 19 C 1.47524 * 120.00073 * 184.66359 * 17 16 11 20 20 C 1.39792 * 120.06695 * 336.24202 * 19 17 16 21 21 C 1.37612 * 119.92773 * 179.79046 * 20 19 17 22 22 C 1.39219 * 120.06643 * 0.46316 * 21 20 19 23 23 N 1.39055 * 119.92839 * 179.76632 * 22 21 20 24 24 C 1.48227 * 110.99931 * 119.92658 * 23 22 21 25 25 C 1.51120 * 105.35992 * 144.89826 * 24 23 22 26 26 C 1.30963 * 109.45612 * 343.02417 * 25 24 23 27 27 C 1.48219 * 110.99962 * 233.56751 * 23 22 21 28 28 C 1.39212 * 120.13913 * 359.78794 * 22 21 20 29 29 C 1.37611 * 120.07335 * 359.97438 * 28 22 21 30 30 H 0.96997 * 120.00012 * 359.97438 * 1 2 3 31 31 H 0.96994 * 120.00251 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.47034 * 307.05078 * 10 9 7 33 33 H 1.09000 * 109.47096 * 67.04880 * 10 9 7 34 34 H 1.09002 * 110.71853 * 336.74737 * 13 11 10 35 35 H 1.08997 * 110.71683 * 100.02672 * 13 11 10 36 36 H 1.09005 * 110.88752 * 277.26733 * 14 13 11 37 37 H 1.09003 * 111.07531 * 153.48795 * 14 13 11 38 38 H 1.09000 * 110.36832 * 204.23406 * 15 14 13 39 39 H 1.09006 * 110.36335 * 81.91294 * 15 14 13 40 40 H 1.07999 * 120.04030 * 359.97438 * 20 19 17 41 41 H 1.07996 * 119.96549 * 180.22965 * 21 20 19 42 42 H 1.08997 * 110.27147 * 263.87398 * 24 23 22 43 43 H 1.08998 * 110.26648 * 25.92785 * 24 23 22 44 44 H 1.08001 * 125.27094 * 163.00636 * 25 24 23 45 45 H 1.08001 * 125.26923 * 179.97438 * 26 25 24 46 46 H 1.09010 * 110.26799 * 334.06960 * 27 23 22 47 47 H 1.09001 * 110.27071 * 96.12374 * 27 23 22 48 48 H 1.08000 * 119.96641 * 179.97438 * 28 22 21 49 49 H 1.07994 * 120.03865 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4001 5 1 1.4475 2.6527 -0.7000 6 1 3.5476 1.4403 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2020 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 6 5.6071 -2.1966 0.1754 12 1 5.9122 -1.3756 -0.4734 13 6 6.4172 -3.4648 -0.1665 14 6 7.5502 -3.4475 0.8969 15 6 6.8140 -2.8663 2.1298 16 7 5.8912 -1.8579 1.5775 17 6 5.3904 -0.8010 2.2474 18 8 4.5684 -0.0789 1.7168 19 6 5.8396 -0.5202 3.6243 20 6 6.3639 -1.5482 4.4133 21 6 6.7860 -1.2822 5.6958 22 6 6.6823 0.0071 6.2109 23 7 7.1053 0.2716 7.5089 24 6 8.1854 1.2866 7.5191 25 6 7.9595 2.0990 8.7732 26 6 6.7422 1.8957 9.2112 27 6 6.0323 0.9269 8.2939 28 6 6.1558 1.0318 5.4294 29 6 5.7365 0.7732 4.1445 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3620 -0.0007 32 1 3.7579 -3.0949 0.8194 33 1 3.9465 -2.9860 -0.9472 34 1 5.8007 -4.3572 -0.0579 35 1 6.8291 -3.3994 -1.1735 36 1 8.3657 -2.7947 0.5853 37 1 7.9142 -4.4550 1.0983 38 1 7.5250 -2.3978 2.8102 39 1 6.2565 -3.6500 2.6429 40 1 6.4404 -2.5495 4.0158 41 1 7.1946 -2.0751 6.3046 42 1 9.1603 0.8004 7.5547 43 1 8.1127 1.9242 6.6380 44 1 8.6890 2.7466 9.2366 45 1 6.3123 2.3496 10.0919 46 1 5.3533 1.4633 7.6310 47 1 5.4851 0.1864 8.8772 48 1 6.0763 2.0308 5.8320 49 1 5.3277 1.5685 3.5389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483945422.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:53 Heat of formation + Delta-G solvation = 64.437112 kcal Electronic energy + Delta-G solvation = -30071.693798 eV Core-core repulsion = 26193.408751 eV Total energy + Delta-G solvation = -3878.285047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.92379 -41.16175 -39.06974 -38.23349 -36.45967 -34.23709 -33.50308 -32.75230 -32.03780 -30.79418 -29.65988 -29.44141 -26.92813 -25.48897 -24.25900 -24.03778 -23.16325 -22.00737 -21.88304 -20.53202 -20.35529 -19.75350 -18.42479 -18.23669 -17.66500 -16.94506 -16.69217 -16.56336 -15.92682 -15.62542 -15.47583 -15.41557 -14.93054 -14.78907 -14.67312 -14.49611 -14.25910 -14.13618 -13.96513 -13.81981 -13.57138 -13.51141 -13.27948 -13.18652 -12.94924 -12.90283 -12.77630 -12.47395 -12.27730 -12.14152 -11.96169 -11.77451 -11.68175 -11.54011 -11.01070 -10.79095 -10.68775 -10.10517 -9.84464 -9.60683 -9.44087 -9.14160 -8.04699 -5.29378 -0.31121 0.26472 1.19938 1.26698 1.37384 1.46090 1.77477 1.96789 2.49256 2.65868 2.75131 3.28100 3.43828 3.54364 3.63091 3.72333 3.76091 3.82551 3.87517 3.96531 4.15323 4.20916 4.23533 4.28554 4.33066 4.42881 4.47756 4.49438 4.50513 4.57451 4.65417 4.74103 4.78634 4.86193 4.90248 4.94240 5.00576 5.06636 5.11848 5.18035 5.24929 5.27980 5.35238 5.40046 5.40383 5.50511 5.59242 5.72292 5.85381 6.19288 6.21859 6.54280 7.08809 7.27590 7.99249 8.18623 9.17794 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010988 B = 0.003509 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.692835 B = 7976.753457 C = 9933.151542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.062 4.062 3 Si 0.968 3.032 4 H -0.293 1.293 5 H -0.299 1.299 6 H -0.274 1.274 7 C -0.216 4.216 8 H 0.054 0.946 9 N -0.750 5.750 10 C 0.144 3.856 11 C 0.126 3.874 12 H 0.057 0.943 13 C -0.114 4.114 14 C -0.118 4.118 15 C 0.077 3.923 16 N -0.609 5.609 17 C 0.549 3.451 18 O -0.554 6.554 19 C -0.140 4.140 20 C -0.086 4.086 21 C -0.094 4.094 22 C 0.098 3.902 23 N -0.474 5.474 24 C 0.049 3.951 25 C -0.167 4.167 26 C -0.172 4.172 27 C 0.044 3.956 28 C -0.156 4.156 29 C -0.072 4.072 30 H 0.255 0.745 31 H 0.375 0.625 32 H 0.017 0.983 33 H 0.036 0.964 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.172 0.828 41 H 0.163 0.837 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.161 0.839 45 H 0.158 0.842 46 H 0.057 0.943 47 H 0.093 0.907 48 H 0.133 0.867 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.417 -4.643 17.200 32.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.640 5.640 2 C -0.253 4.253 3 Si 0.800 3.200 4 H -0.220 1.220 5 H -0.226 1.226 6 H -0.200 1.200 7 C -0.347 4.347 8 H 0.072 0.928 9 N -0.401 5.401 10 C 0.017 3.983 11 C 0.023 3.977 12 H 0.075 0.925 13 C -0.153 4.153 14 C -0.156 4.156 15 C -0.044 4.044 16 N -0.343 5.343 17 C 0.340 3.660 18 O -0.432 6.432 19 C -0.143 4.143 20 C -0.105 4.105 21 C -0.112 4.112 22 C 0.003 3.997 23 N -0.195 5.195 24 C -0.076 4.076 25 C -0.185 4.185 26 C -0.190 4.190 27 C -0.082 4.082 28 C -0.176 4.176 29 C -0.092 4.092 30 H 0.063 0.937 31 H 0.215 0.785 32 H 0.035 0.965 33 H 0.053 0.947 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.138 0.862 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.189 0.811 41 H 0.181 0.819 42 H 0.119 0.881 43 H 0.078 0.922 44 H 0.179 0.821 45 H 0.175 0.825 46 H 0.075 0.925 47 H 0.111 0.889 48 H 0.151 0.849 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 26.970 -4.821 17.177 32.336 hybrid contribution -1.024 2.293 -0.638 2.591 sum 25.946 -2.527 16.539 30.873 Atomic orbital electron populations 1.69870 1.06640 1.26140 1.61302 1.25251 0.95891 1.00533 1.03607 0.85186 0.77304 0.80435 0.77123 1.22038 1.22613 1.19984 1.19086 0.83384 0.93001 1.39265 0.92816 1.43204 1.02315 1.04846 1.89722 1.21214 0.91064 0.88032 0.97997 1.21970 0.94182 0.99152 0.82433 0.92526 1.22693 0.96677 0.94610 1.01300 1.22875 0.96580 1.03629 0.92522 1.23152 0.92148 0.90622 0.98447 1.48487 1.47344 1.25764 1.12658 1.18490 0.80642 0.80510 0.86407 1.90712 1.32956 1.49941 1.69570 1.19936 1.04625 0.95889 0.93843 1.22188 0.94694 0.99945 0.93650 1.21198 0.99456 0.95957 0.94592 1.19331 0.96586 0.93932 0.89847 1.63209 1.07954 1.39590 1.08787 1.22324 0.96294 0.91815 0.97204 1.23775 0.98286 1.00098 0.96332 1.23725 0.96154 0.98915 1.00186 1.22344 0.93940 0.96341 0.95576 1.21586 1.01598 1.00430 0.93975 1.21048 0.96567 0.95895 0.95690 0.93668 0.78502 0.96512 0.94677 0.89311 0.88171 0.89921 0.86208 0.87863 0.89413 0.81063 0.81949 0.88096 0.92210 0.82120 0.82491 0.92520 0.88871 0.84909 0.87357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -69.66 13.97 21.65 0.30 -69.36 16 2 C -0.06 -4.17 5.50 84.86 0.47 -3.70 16 3 Si 0.97 56.38 26.62 68.60 1.83 58.20 16 4 H -0.29 -17.39 7.11 99.48 0.71 -16.68 16 5 H -0.30 -16.83 7.11 99.48 0.71 -16.13 16 6 H -0.27 -15.32 6.52 99.48 0.65 -14.67 16 7 C -0.22 -14.03 10.47 84.03 0.88 -13.15 16 8 H 0.05 3.71 8.06 -2.91 -0.02 3.69 16 9 N -0.75 -41.36 3.90 -343.43 -1.34 -42.70 16 10 C 0.14 6.10 5.61 86.38 0.48 6.58 16 11 C 0.13 3.95 3.07 45.35 0.14 4.09 16 12 H 0.06 1.96 8.10 -2.39 -0.02 1.95 16 13 C -0.11 -2.09 6.46 31.87 0.21 -1.89 16 14 C -0.12 -1.42 7.09 32.07 0.23 -1.20 16 15 C 0.08 1.30 5.01 86.85 0.44 1.74 16 16 N -0.61 -18.26 3.07 -791.77 -2.43 -20.69 16 17 C 0.55 20.89 7.49 86.69 0.65 21.54 16 18 O -0.55 -27.63 11.58 -4.02 -0.05 -27.67 16 19 C -0.14 -4.29 5.77 -20.08 -0.12 -4.40 16 20 C -0.09 -1.86 7.97 22.50 0.18 -1.68 16 21 C -0.09 -1.76 9.95 22.36 0.22 -1.54 16 22 C 0.10 2.06 4.90 38.47 0.19 2.25 16 23 N -0.47 -8.61 5.56 -695.45 -3.87 -12.48 16 24 C 0.05 0.72 6.46 85.43 0.55 1.28 16 25 C -0.17 -1.99 10.95 25.82 0.28 -1.71 16 26 C -0.17 -2.22 10.95 25.82 0.28 -1.93 16 27 C 0.04 0.75 6.43 85.44 0.55 1.30 16 28 C -0.16 -3.82 7.65 22.36 0.17 -3.65 16 29 C -0.07 -2.24 9.58 22.50 0.22 -2.03 16 30 H 0.25 17.12 8.31 -92.71 -0.77 16.35 16 31 H 0.38 21.12 3.18 -92.71 -0.29 20.82 16 32 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.04 1.43 8.08 -2.39 -0.02 1.41 16 34 H 0.09 1.53 7.85 -2.39 -0.02 1.51 16 35 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.10 1.39 5.85 -2.39 -0.01 1.38 16 39 H 0.09 1.26 7.42 -2.38 -0.02 1.24 16 40 H 0.17 2.74 4.19 -2.91 -0.01 2.73 16 41 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 42 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.06 0.96 6.73 -2.39 -0.02 0.94 16 44 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 45 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 46 H 0.06 1.10 6.28 -2.38 -0.01 1.08 16 47 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.13 2.92 7.01 -2.91 -0.02 2.90 16 49 H 0.11 3.84 7.82 -2.91 -0.02 3.82 16 Total: -1.00 -90.31 378.65 1.08 -89.23 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.61 Total: 23.56 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 6.02 Total: 1.90 kcal Atomic # 7 Polarization: -137.89 SS G_CDS: -7.33 Total: -145.22 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.05 Total: -27.67 kcal Atomic # 14 Polarization: 56.38 SS G_CDS: 1.83 Total: 58.20 kcal Total: -90.31 1.08 -89.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483945422.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.667 kcal (2) G-P(sol) polarization free energy of solvation -90.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds