Wall clock time and date at job start Sat Apr 11 2020 06:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99673 * 2 1 4 4 H 1.48504 * 109.46864 * 89.99879 * 3 2 1 5 5 H 1.48506 * 109.47014 * 209.99530 * 3 2 1 6 6 H 1.48497 * 109.47441 * 329.99995 * 3 2 1 7 7 C 1.38804 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00062 * 201.01054 * 7 2 1 9 9 N 1.36943 * 120.00185 * 21.01986 * 7 2 1 10 10 C 1.46924 * 120.62541 * 31.22442 * 9 7 2 11 11 C 1.53194 * 108.76913 * 126.37629 * 10 9 7 12 12 C 1.53043 * 109.31518 * 54.63666 * 11 10 9 13 13 C 1.53042 * 109.53468 * 298.63047 * 12 11 10 14 14 C 1.46923 * 120.63307 * 210.95656 * 9 7 2 15 15 H 1.08990 * 109.58818 * 113.83520 * 14 9 7 16 16 C 1.53001 * 109.58514 * 353.41030 * 14 9 7 17 17 N 1.46505 * 109.47161 * 59.66713 * 16 14 9 18 18 C 1.34770 * 120.00002 * 180.02562 * 17 16 14 19 19 O 1.21286 * 120.00511 * 359.97438 * 18 17 16 20 20 C 1.50699 * 120.00187 * 180.02562 * 18 17 16 21 21 C 1.50694 * 109.47554 * 179.97438 * 20 18 17 22 22 C 1.34238 * 126.50339 * 264.68863 * 21 20 18 23 23 N 1.36841 * 109.92965 * 179.86785 * 22 21 20 24 24 H 0.97001 * 125.05975 * 180.14763 * 23 22 21 25 25 C 1.37690 * 109.87274 * 0.40787 * 23 22 21 26 26 C 1.39126 * 133.51365 * 179.75927 * 25 23 22 27 27 C 1.37740 * 119.78170 * 179.97438 * 26 25 23 28 28 C 1.38834 * 120.66899 * 0.02562 * 27 26 25 29 29 C 1.36622 * 120.52795 * 359.97299 * 28 27 26 30 30 C 1.39639 * 119.75921 * 0.04671 * 29 28 27 31 31 H 0.96990 * 119.99470 * 184.97986 * 1 2 3 32 32 H 1.09000 * 109.58842 * 246.15824 * 10 9 7 33 33 H 1.08993 * 109.58994 * 6.44756 * 10 9 7 34 34 H 1.09009 * 109.49614 * 174.58292 * 11 10 9 35 35 H 1.09004 * 109.49821 * 294.67842 * 11 10 9 36 36 H 1.08998 * 109.46056 * 58.65485 * 12 11 10 37 37 H 1.09000 * 109.45740 * 178.63126 * 12 11 10 38 38 H 1.08996 * 109.49793 * 181.31524 * 13 12 11 39 39 H 1.08997 * 109.50155 * 301.38619 * 13 12 11 40 40 H 1.08996 * 109.47185 * 179.66542 * 16 14 9 41 41 H 1.09000 * 109.47159 * 299.66840 * 16 14 9 42 42 H 0.97002 * 119.99777 * 0.02562 * 17 16 14 43 43 H 1.09009 * 109.47069 * 299.99943 * 20 18 17 44 44 H 1.09001 * 109.47031 * 59.99362 * 20 18 17 45 45 H 1.07996 * 125.03746 * 359.97438 * 22 21 20 46 46 H 1.08002 * 120.10245 * 0.02730 * 26 25 23 47 47 H 1.08007 * 119.66649 * 179.97438 * 27 26 25 48 48 H 1.08001 * 119.73618 * 179.97438 * 28 27 26 49 49 H 1.07998 * 120.11945 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 1.4001 5 1 3.5478 1.4403 -0.7000 6 1 1.4476 2.6528 -0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0365 -1.2329 0.3359 9 7 1.3940 -2.3488 -0.4243 10 6 0.3556 -2.2999 -1.4626 11 6 0.7343 -3.2715 -2.5847 12 6 0.9658 -4.6635 -1.9923 13 6 2.1219 -4.6078 -0.9911 14 6 1.7628 -3.6520 0.1452 15 1 0.9211 -4.0566 0.7071 16 6 2.9686 -3.4840 1.0718 17 7 2.6297 -2.5522 2.1504 18 6 3.5450 -2.2498 3.0921 19 8 4.6493 -2.7493 3.0471 20 6 3.1962 -1.2918 4.2019 21 6 4.3839 -1.1263 5.1145 22 6 4.6143 -1.7962 6.2547 23 7 5.7937 -1.3801 6.8100 24 1 6.1718 -1.7212 7.6356 25 6 6.3608 -0.4011 6.0253 26 6 7.5278 0.3499 6.1248 27 6 7.8288 1.2782 5.1528 28 6 6.9787 1.4738 4.0727 29 6 5.8276 0.7473 3.9551 30 6 5.5026 -0.1989 4.9293 31 1 -0.4849 -0.8368 0.0729 32 1 -0.6033 -2.5920 -1.0344 33 1 0.2847 -1.2879 -1.8611 34 1 -0.0737 -3.3167 -3.3150 35 1 1.6466 -2.9270 -3.0718 36 1 0.0610 -4.9970 -1.4842 37 1 1.2117 -5.3622 -2.7921 38 1 2.3015 -5.6040 -0.5870 39 1 3.0213 -4.2513 -1.4932 40 1 3.2369 -4.4507 1.4978 41 1 3.8116 -3.0908 0.5036 42 1 1.7463 -2.1530 2.1866 43 1 2.9271 -0.3250 3.7762 44 1 2.3536 -1.6856 4.7704 45 1 3.9659 -2.5528 6.6712 46 1 8.1957 0.2047 6.9609 47 1 8.7350 1.8605 5.2320 48 1 7.2293 2.2060 3.3194 49 1 5.1713 0.9046 3.1120 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491229865.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:23 Heat of formation + Delta-G solvation = 35.027137 kcal Electronic energy + Delta-G solvation = -30203.449355 eV Core-core repulsion = 26323.888995 eV Total energy + Delta-G solvation = -3879.560359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.14104 -39.07324 -37.79791 -36.74517 -34.11466 -33.34598 -32.84531 -30.93454 -29.93353 -29.70788 -29.13328 -27.21339 -25.63029 -24.42365 -22.71327 -22.05550 -21.62870 -21.04033 -20.11723 -19.22358 -18.91825 -17.73970 -17.23534 -16.29198 -16.10717 -15.50398 -15.39597 -15.05785 -14.40261 -14.27604 -14.14895 -13.83843 -13.69187 -13.62704 -13.50936 -13.27496 -12.96171 -12.73828 -12.42924 -12.34323 -12.13036 -11.87406 -11.53189 -11.52657 -11.39548 -11.09977 -11.06823 -10.74197 -10.62476 -10.39274 -10.24587 -10.09290 -9.97304 -9.73615 -9.54693 -9.22390 -9.01851 -8.48569 -8.11919 -8.06239 -7.49211 -6.87890 -6.05146 -3.30104 1.28218 1.78946 2.77761 3.21047 3.36632 3.46325 3.52139 3.66318 3.99464 4.19357 4.53227 4.85308 4.91493 5.08142 5.09842 5.24737 5.34967 5.35382 5.43356 5.44529 5.51017 5.59307 5.66892 5.68782 5.84262 5.86034 5.87589 5.97519 6.01777 6.08184 6.10338 6.24657 6.29040 6.30825 6.33713 6.51019 6.54834 6.60258 6.61149 6.70437 6.77073 6.84881 6.87755 6.95049 7.09744 7.18708 7.28780 7.30713 7.62265 8.05895 8.37939 8.56890 9.01852 9.06496 9.80467 10.25929 11.19932 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013430 B = 0.003464 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.336871 B = 8081.513819 C = 9275.284155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.019 4.019 3 Si 1.056 2.944 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.342 4.342 8 H 0.063 0.937 9 N -0.596 5.596 10 C 0.152 3.848 11 C -0.139 4.139 12 C -0.107 4.107 13 C -0.128 4.128 14 C 0.163 3.837 15 H 0.029 0.971 16 C 0.139 3.861 17 N -0.695 5.695 18 C 0.508 3.492 19 O -0.556 6.556 20 C -0.069 4.069 21 C -0.136 4.136 22 C 0.052 3.948 23 N -0.597 5.597 24 H 0.412 0.588 25 C 0.095 3.905 26 C -0.137 4.137 27 C -0.101 4.101 28 C -0.151 4.151 29 C -0.061 4.061 30 C -0.089 4.089 31 H 0.270 0.730 32 H 0.016 0.984 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.412 0.588 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.167 0.833 46 H 0.115 0.885 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.047 -3.542 10.227 12.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.886 3.114 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.213 1.213 7 C -0.471 4.471 8 H 0.080 0.920 9 N -0.321 5.321 10 C 0.026 3.974 11 C -0.178 4.178 12 C -0.145 4.145 13 C -0.168 4.168 14 C 0.056 3.944 15 H 0.046 0.954 16 C 0.015 3.985 17 N -0.346 5.346 18 C 0.294 3.706 19 O -0.436 6.436 20 C -0.110 4.110 21 C -0.143 4.143 22 C -0.073 4.073 23 N -0.200 5.200 24 H 0.249 0.751 25 C -0.012 4.012 26 C -0.158 4.158 27 C -0.121 4.121 28 C -0.171 4.171 29 C -0.080 4.080 30 C -0.094 4.094 31 H 0.081 0.919 32 H 0.034 0.966 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.249 0.751 43 H 0.120 0.880 44 H 0.113 0.887 45 H 0.184 0.816 46 H 0.133 0.867 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.675 -2.292 10.242 13.002 hybrid contribution -0.051 -1.710 0.285 1.734 sum 7.625 -4.002 10.527 13.600 Atomic orbital electron populations 1.70769 1.06514 1.30445 1.48223 1.25745 0.96556 1.01101 0.98785 0.83648 0.74842 0.76208 0.76697 1.21855 1.21901 1.21281 1.20021 0.95982 0.86957 1.44169 0.91974 1.44156 1.45260 1.01616 1.41075 1.20953 0.90243 0.98383 0.87809 1.22079 1.00587 0.96116 0.99016 1.21359 0.98137 0.97179 0.97817 1.21870 0.98699 0.98508 0.97728 1.20613 0.94062 0.87958 0.91746 0.95395 1.21176 0.97964 0.91457 0.87931 1.45983 1.17104 1.46133 1.25429 1.20460 0.84858 0.82268 0.83045 1.90642 1.22144 1.54109 1.76679 1.19955 0.95677 1.00799 0.94532 1.19649 0.97370 1.00571 0.96734 1.21465 0.89021 1.00846 0.95980 1.41598 1.20160 1.34753 1.23515 0.75141 1.18218 0.96149 0.93627 0.93185 1.19927 0.95609 0.99030 1.01213 1.20741 0.99345 0.97839 0.94141 1.20611 0.95538 1.01767 0.99159 1.20390 0.96631 0.93786 0.97166 1.19025 0.95529 0.99112 0.95694 0.91878 0.96578 0.90452 0.93353 0.92496 0.92892 0.93470 0.92943 0.92042 0.93063 0.91861 0.75062 0.87971 0.88747 0.81598 0.86693 0.86111 0.86166 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.27 12.50 55.49 0.69 -24.58 16 2 C -0.02 -0.50 4.77 -17.43 -0.08 -0.59 16 3 Si 1.06 24.30 29.97 -169.99 -5.09 19.21 16 4 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.34 -8.48 6.86 -15.06 -0.10 -8.58 16 8 H 0.06 1.62 5.89 -52.49 -0.31 1.31 16 9 N -0.60 -13.39 2.82 -165.04 -0.46 -13.86 16 10 C 0.15 3.31 4.65 -3.71 -0.02 3.30 16 11 C -0.14 -2.52 6.08 -26.61 -0.16 -2.69 16 12 C -0.11 -1.73 5.89 -26.69 -0.16 -1.89 16 13 C -0.13 -2.17 5.35 -26.83 -0.14 -2.31 16 14 C 0.16 3.13 3.00 -67.82 -0.20 2.93 16 15 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 16 C 0.14 2.68 4.42 -4.04 -0.02 2.67 16 17 N -0.70 -13.33 3.81 -60.29 -0.23 -13.56 16 18 C 0.51 9.67 7.82 -10.99 -0.09 9.59 16 19 O -0.56 -12.36 16.03 5.55 0.09 -12.27 16 20 C -0.07 -1.09 6.23 -29.04 -0.18 -1.27 16 21 C -0.14 -2.14 4.81 -102.71 -0.49 -2.64 16 22 C 0.05 0.67 11.73 -16.73 -0.20 0.47 16 23 N -0.60 -7.05 6.07 -10.65 -0.06 -7.11 16 24 H 0.41 3.32 8.96 -40.82 -0.37 2.95 16 25 C 0.10 1.37 7.28 -83.99 -0.61 0.76 16 26 C -0.14 -1.72 10.08 -39.43 -0.40 -2.12 16 27 C -0.10 -1.26 10.01 -39.54 -0.40 -1.66 16 28 C -0.15 -2.13 9.97 -39.94 -0.40 -2.53 16 29 C -0.06 -1.01 10.05 -39.64 -0.40 -1.41 16 30 C -0.09 -1.48 6.35 -105.13 -0.67 -2.15 16 31 H 0.27 7.42 6.45 -40.82 -0.26 7.15 16 32 H 0.02 0.36 7.78 -51.93 -0.40 -0.04 16 33 H 0.08 1.92 6.43 -51.93 -0.33 1.59 16 34 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.06 1.37 7.45 -51.93 -0.39 0.99 16 42 H 0.41 8.15 7.34 -40.82 -0.30 7.85 16 43 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 44 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.17 1.57 8.06 -52.49 -0.42 1.14 16 46 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 47 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 48 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 49 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 389.91 15.07 5.88 5.88 Total: -1.00 -31.29 389.91 -11.41 -42.70 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -7.50 Total: 13.70 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -4.71 Total: -10.11 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.07 Total: -59.10 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.09 Total: 19.21 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.29 -11.41 -42.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491229865.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.730 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds