Wall clock time and date at job start Sat Apr 11 2020 06:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 119.99947 * 2 1 4 4 H 1.48505 * 109.46717 * 239.99378 * 3 2 1 5 5 H 1.48502 * 109.47283 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47517 * 119.99635 * 3 2 1 7 7 C 1.38946 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99971 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00087 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99872 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00101 * 359.73373 * 10 9 7 12 12 C 1.50699 * 119.99678 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47320 * 179.72628 * 12 10 9 14 14 C 1.46898 * 111.00368 * 180.02562 * 13 12 10 15 15 C 1.52994 * 109.47203 * 175.07570 * 14 13 12 16 16 H 1.09011 * 109.87127 * 304.77341 * 15 14 13 17 17 C 1.54324 * 109.88755 * 65.79125 * 15 14 13 18 18 C 1.55155 * 102.94000 * 141.61260 * 17 15 14 19 19 C 1.54910 * 101.58396 * 324.49848 * 18 17 15 20 20 N 1.47023 * 109.88504 * 183.60583 * 15 14 13 21 21 C 1.34772 * 125.64896 * 61.61256 * 20 15 14 22 22 O 1.21287 * 120.00389 * 5.38180 * 21 20 15 23 23 C 1.50706 * 119.99852 * 185.38329 * 21 20 15 24 24 C 1.53000 * 112.85107 * 48.80398 * 23 21 20 25 25 F 1.39890 * 109.47135 * 189.66580 * 24 23 21 26 26 C 1.53784 * 113.61356 * 277.49525 * 23 21 20 27 27 C 1.53781 * 87.08198 * 220.02044 * 26 23 21 28 28 C 1.53784 * 87.08111 * 25.43474 * 27 26 23 29 29 H 0.97000 * 119.99713 * 0.02562 * 1 2 3 30 30 H 0.97002 * 119.99698 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.47284 * 299.72588 * 12 10 9 32 32 H 1.09000 * 109.47278 * 59.72968 * 12 10 9 33 33 H 1.00901 * 110.99745 * 303.96046 * 13 12 10 34 34 H 1.09006 * 109.46941 * 295.07073 * 14 13 12 35 35 H 1.09004 * 109.46804 * 55.07049 * 14 13 12 36 36 H 1.08997 * 110.71817 * 259.97517 * 17 15 14 37 37 H 1.09004 * 110.71707 * 23.07266 * 17 15 14 38 38 H 1.08996 * 111.00485 * 82.57632 * 18 17 15 39 39 H 1.09004 * 110.99919 * 206.38874 * 18 17 15 40 40 H 1.09001 * 110.36412 * 155.85218 * 19 18 17 41 41 H 1.08994 * 110.36707 * 278.06298 * 19 18 17 42 42 H 1.08999 * 109.46798 * 309.67013 * 24 23 21 43 43 H 1.09006 * 109.46748 * 69.66623 * 24 23 21 44 44 H 1.08995 * 113.61153 * 334.56937 * 26 23 21 45 45 H 1.09002 * 113.60669 * 105.47238 * 26 23 21 46 46 H 1.08999 * 113.61404 * 270.88522 * 27 26 23 47 47 H 1.09000 * 113.61236 * 139.98090 * 27 26 23 48 48 H 1.09005 * 113.61580 * 220.02032 * 28 27 26 49 49 H 1.09002 * 113.61589 * 89.11687 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6966 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 -0.0042 12 6 1.2437 -4.8629 0.0022 13 7 2.1982 -5.9795 -0.0046 14 6 1.4979 -7.2708 -0.0048 15 6 2.5175 -8.4039 -0.1357 16 1 3.1308 -8.2498 -1.0236 17 6 3.4139 -8.4511 1.1197 18 6 3.6025 -9.9731 1.3549 19 6 2.2212 -10.5277 0.9258 20 7 1.8210 -9.6957 -0.2235 21 6 0.9590 -10.0589 -1.1938 22 8 0.7758 -9.3306 -2.1461 23 6 0.2228 -11.3702 -1.0955 24 6 -0.4325 -11.5827 0.2707 25 9 -0.9024 -12.8971 0.3631 26 6 1.0445 -12.5760 -1.5808 27 6 -0.2503 -13.0997 -2.2242 28 6 -0.7214 -11.6369 -2.2798 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3906 0.0016 31 1 0.6210 -4.9225 0.8949 32 1 0.6130 -4.9187 -0.8851 33 1 2.8296 -5.9107 -0.7886 34 1 0.9458 -7.3849 0.9282 35 1 0.8039 -7.3076 -0.8446 36 1 4.3723 -7.9689 0.9275 37 1 2.9131 -7.9860 1.9688 38 1 4.3966 -10.3707 0.7230 39 1 3.7996 -10.1844 2.4059 40 1 2.3082 -11.5721 0.6262 41 1 1.5023 -10.4256 1.7387 42 1 0.3004 -11.4026 1.0571 43 1 -1.2663 -10.8898 0.3854 44 1 1.8170 -12.3152 -2.3042 45 1 1.4158 -13.2054 -0.7719 46 1 -0.8461 -13.7253 -1.5595 47 1 -0.0997 -13.5476 -3.2064 48 1 -1.7758 -11.5080 -2.0351 49 1 -0.4317 -11.1193 -3.1943 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495578871.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:32 Heat of formation + Delta-G solvation = -92.023555 kcal Electronic energy + Delta-G solvation = -30323.463965 eV Core-core repulsion = 26007.625050 eV Total energy + Delta-G solvation = -4315.838915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.21587 -41.04853 -38.94339 -38.16755 -37.18831 -35.28301 -33.81422 -32.14542 -31.23464 -30.57566 -29.19159 -26.84834 -26.15112 -25.46185 -24.49611 -23.33849 -22.56390 -21.50417 -20.04403 -19.32723 -18.98973 -17.89908 -17.66193 -16.88585 -16.56486 -16.36557 -16.04327 -15.76523 -15.38714 -15.11503 -14.59641 -14.48819 -14.37123 -14.04157 -13.90838 -13.71768 -13.57530 -13.37833 -13.24312 -12.83848 -12.77544 -12.51935 -12.44160 -12.21116 -11.74448 -11.63060 -11.57613 -11.48758 -11.47473 -11.32784 -11.05257 -10.90962 -10.86957 -10.72245 -10.56664 -10.42996 -10.19756 -9.94963 -9.48190 -8.96839 -8.42669 -8.04572 -7.93971 -6.39679 -3.80592 2.23277 2.57530 3.21489 3.26913 3.31425 3.77244 3.88109 3.93409 3.98182 4.07566 4.15700 4.24029 4.37578 4.44305 4.50109 4.59335 4.62471 4.74052 4.87872 4.94465 5.09928 5.11208 5.15721 5.16383 5.26312 5.29438 5.34879 5.39008 5.48075 5.52468 5.58052 5.59899 5.72949 5.73777 5.78066 5.83054 5.90861 6.00800 6.02033 6.12151 6.18131 6.29713 7.15118 7.23608 7.56777 7.64678 7.85989 8.08006 8.63302 9.19551 9.56393 10.07838 10.78061 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.021103 B = 0.002040 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.477874 B =13721.090412 C =14369.353530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.442 3.558 11 O -0.584 6.584 12 C 0.052 3.948 13 N -0.662 5.662 14 C 0.050 3.950 15 C 0.138 3.862 16 H 0.077 0.923 17 C -0.114 4.114 18 C -0.136 4.136 19 C 0.093 3.907 20 N -0.613 5.613 21 C 0.547 3.453 22 O -0.524 6.524 23 C -0.143 4.143 24 C 0.077 3.923 25 F -0.206 7.206 26 C -0.115 4.115 27 C -0.144 4.144 28 C -0.110 4.110 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.349 0.651 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.096 0.904 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.894 -28.653 1.803 28.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.228 3.772 11 O -0.468 6.468 12 C -0.081 4.081 13 N -0.295 5.295 14 C -0.081 4.081 15 C 0.035 3.965 16 H 0.095 0.905 17 C -0.152 4.152 18 C -0.174 4.174 19 C -0.030 4.030 20 N -0.347 5.347 21 C 0.335 3.665 22 O -0.399 6.399 23 C -0.147 4.147 24 C 0.022 3.978 25 F -0.187 7.187 26 C -0.153 4.153 27 C -0.181 4.181 28 C -0.148 4.148 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.168 0.832 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.096 0.904 46 H 0.114 0.886 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.298 -28.121 1.896 28.187 hybrid contribution -0.654 0.873 -0.834 1.373 sum -0.952 -27.249 1.062 27.286 Atomic orbital electron populations 1.69609 1.05938 1.28245 1.50566 1.25269 0.95644 0.99733 0.97348 0.85910 0.78745 0.80444 0.79062 1.19919 1.20994 1.19883 1.19652 0.93337 0.82241 1.47666 0.87968 1.41858 1.09214 1.04598 1.64379 1.19778 0.88359 0.84679 0.84411 1.90513 1.13734 1.87081 1.55451 1.21660 0.94324 0.90863 1.01245 1.60090 1.18946 0.99550 1.50920 1.22270 0.95659 0.88975 1.01177 1.21576 0.93057 0.82278 0.99567 0.90490 1.22604 1.00510 0.95034 0.97044 1.22846 0.95823 0.96446 1.02301 1.22544 0.96717 0.95242 0.88476 1.48575 1.44687 1.16599 1.24880 1.19734 0.78718 0.86689 0.81363 1.90738 1.64406 1.53478 1.31320 1.22788 0.99634 0.94373 0.97868 1.21947 0.99932 0.79971 0.95928 1.92737 1.90388 1.38538 1.96988 1.22832 0.97304 0.94344 1.00786 1.23012 0.96790 0.96707 1.01624 1.22867 0.98466 0.96332 0.97123 0.91830 0.77452 0.89697 0.93817 0.83193 0.91137 0.94222 0.89354 0.89654 0.90563 0.89581 0.90391 0.90913 0.89041 0.89848 0.89382 0.90380 0.88560 0.91009 0.90741 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.61 5.29 -10.97 -0.06 -14.67 16 10 C 0.44 10.68 7.82 -10.99 -0.09 10.59 16 11 O -0.58 -16.01 15.78 5.55 0.09 -15.92 16 12 C 0.05 0.96 6.16 -4.97 -0.03 0.93 16 13 N -0.66 -10.97 5.93 -115.05 -0.68 -11.65 16 14 C 0.05 0.67 5.09 -3.83 -0.02 0.65 16 15 C 0.14 1.56 2.99 -66.96 -0.20 1.36 16 16 H 0.08 0.98 8.13 -51.92 -0.42 0.56 16 17 C -0.11 -1.05 6.26 -24.90 -0.16 -1.21 16 18 C -0.14 -0.86 7.08 -24.58 -0.17 -1.03 16 19 C 0.09 0.59 5.01 -2.53 -0.01 0.57 16 20 N -0.61 -5.93 3.05 -163.02 -0.50 -6.43 16 21 C 0.55 6.17 6.70 -10.98 -0.07 6.09 16 22 O -0.52 -8.06 15.10 5.55 0.08 -7.98 16 23 C -0.14 -1.19 0.76 -154.84 -0.12 -1.31 16 24 C 0.08 0.53 6.82 37.16 0.25 0.78 16 25 F -0.21 -1.61 14.57 2.25 0.03 -1.58 16 26 C -0.11 -0.81 6.38 -25.92 -0.17 -0.98 16 27 C -0.14 -1.01 7.57 -25.92 -0.20 -1.21 16 28 C -0.11 -0.95 6.97 -25.91 -0.18 -1.13 16 29 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.35 6.08 8.36 -39.29 -0.33 5.76 16 34 H 0.07 0.90 8.06 -51.93 -0.42 0.49 16 35 H 0.04 0.61 6.92 -51.93 -0.36 0.25 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.85 7.79 -51.93 -0.40 0.44 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.39 6.84 -51.93 -0.36 0.03 16 41 H 0.07 0.38 6.80 -51.93 -0.35 0.02 16 42 H 0.09 0.49 4.22 -51.93 -0.22 0.27 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 45 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 46 H 0.10 0.67 6.44 -51.93 -0.33 0.34 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 49 H 0.10 1.00 7.43 -51.93 -0.39 0.62 16 LS Contribution 389.82 15.07 5.87 5.87 Total: -1.00 -33.25 389.82 -8.48 -41.73 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -7.62 Total: 12.54 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -1.40 Total: 5.98 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.51 Total: -56.93 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: 0.17 Total: -23.90 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.03 Total: -1.58 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.25 -8.48 -41.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495578871.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.290 kcal (2) G-P(sol) polarization free energy of solvation -33.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds