Wall clock time and date at job start Sat Apr 11 2020 06:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 119.99947 * 2 1 4 4 H 1.48505 * 109.46717 * 239.99378 * 3 2 1 5 5 H 1.48502 * 109.47283 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47517 * 119.99635 * 3 2 1 7 7 C 1.38946 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99971 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00087 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99872 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00101 * 359.73373 * 10 9 7 12 12 C 1.50699 * 119.99678 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47320 * 179.72628 * 12 10 9 14 14 C 1.46898 * 111.00368 * 180.02562 * 13 12 10 15 15 C 1.52994 * 109.47203 * 175.07570 * 14 13 12 16 16 H 1.09011 * 109.87127 * 304.77341 * 15 14 13 17 17 C 1.54324 * 109.88755 * 65.79125 * 15 14 13 18 18 C 1.55155 * 102.94000 * 141.61260 * 17 15 14 19 19 C 1.54910 * 101.58396 * 324.49848 * 18 17 15 20 20 N 1.47023 * 109.88504 * 183.60583 * 15 14 13 21 21 C 1.34772 * 125.64896 * 61.61256 * 20 15 14 22 22 O 1.21287 * 120.00389 * 5.38180 * 21 20 15 23 23 C 1.50706 * 119.99852 * 185.38329 * 21 20 15 24 24 C 1.53000 * 112.85107 * 48.80398 * 23 21 20 25 25 F 1.39890 * 109.47135 * 189.66580 * 24 23 21 26 26 C 1.53784 * 113.61356 * 277.49525 * 23 21 20 27 27 C 1.53781 * 87.08198 * 220.02044 * 26 23 21 28 28 C 1.53784 * 87.08111 * 25.43474 * 27 26 23 29 29 H 0.97000 * 119.99713 * 0.02562 * 1 2 3 30 30 H 0.97002 * 119.99698 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.47284 * 299.72588 * 12 10 9 32 32 H 1.09000 * 109.47278 * 59.72968 * 12 10 9 33 33 H 1.00901 * 110.99745 * 303.96046 * 13 12 10 34 34 H 1.09006 * 109.46941 * 295.07073 * 14 13 12 35 35 H 1.09004 * 109.46804 * 55.07049 * 14 13 12 36 36 H 1.08997 * 110.71817 * 259.97517 * 17 15 14 37 37 H 1.09004 * 110.71707 * 23.07266 * 17 15 14 38 38 H 1.08996 * 111.00485 * 82.57632 * 18 17 15 39 39 H 1.09004 * 110.99919 * 206.38874 * 18 17 15 40 40 H 1.09001 * 110.36412 * 155.85218 * 19 18 17 41 41 H 1.08994 * 110.36707 * 278.06298 * 19 18 17 42 42 H 1.08999 * 109.46798 * 309.67013 * 24 23 21 43 43 H 1.09006 * 109.46748 * 69.66623 * 24 23 21 44 44 H 1.08995 * 113.61153 * 334.56937 * 26 23 21 45 45 H 1.09002 * 113.60669 * 105.47238 * 26 23 21 46 46 H 1.08999 * 113.61404 * 270.88522 * 27 26 23 47 47 H 1.09000 * 113.61236 * 139.98090 * 27 26 23 48 48 H 1.09005 * 113.61580 * 220.02032 * 28 27 26 49 49 H 1.09002 * 113.61589 * 89.11687 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6966 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 -0.0042 12 6 1.2437 -4.8629 0.0022 13 7 2.1982 -5.9795 -0.0046 14 6 1.4979 -7.2708 -0.0048 15 6 2.5175 -8.4039 -0.1357 16 1 3.1308 -8.2498 -1.0236 17 6 3.4139 -8.4511 1.1197 18 6 3.6025 -9.9731 1.3549 19 6 2.2212 -10.5277 0.9258 20 7 1.8210 -9.6957 -0.2235 21 6 0.9590 -10.0589 -1.1938 22 8 0.7758 -9.3306 -2.1461 23 6 0.2228 -11.3702 -1.0955 24 6 -0.4325 -11.5827 0.2707 25 9 -0.9024 -12.8971 0.3631 26 6 1.0445 -12.5760 -1.5808 27 6 -0.2503 -13.0997 -2.2242 28 6 -0.7214 -11.6369 -2.2798 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3906 0.0016 31 1 0.6210 -4.9225 0.8949 32 1 0.6130 -4.9187 -0.8851 33 1 2.8296 -5.9107 -0.7886 34 1 0.9458 -7.3849 0.9282 35 1 0.8039 -7.3076 -0.8446 36 1 4.3723 -7.9689 0.9275 37 1 2.9131 -7.9860 1.9688 38 1 4.3966 -10.3707 0.7230 39 1 3.7996 -10.1844 2.4059 40 1 2.3082 -11.5721 0.6262 41 1 1.5023 -10.4256 1.7387 42 1 0.3004 -11.4026 1.0571 43 1 -1.2663 -10.8898 0.3854 44 1 1.8170 -12.3152 -2.3042 45 1 1.4158 -13.2054 -0.7719 46 1 -0.8461 -13.7253 -1.5595 47 1 -0.0997 -13.5476 -3.2064 48 1 -1.7758 -11.5080 -2.0351 49 1 -0.4317 -11.1193 -3.1943 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495578871.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:31 Heat of formation + Delta-G solvation = -115.362151 kcal Electronic energy + Delta-G solvation = -30324.476003 eV Core-core repulsion = 26007.625050 eV Total energy + Delta-G solvation = -4316.850953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.77730 -41.83640 -40.22907 -39.54785 -38.06012 -36.67249 -35.81480 -33.31365 -32.91320 -31.53694 -29.93115 -28.24669 -26.78000 -26.57292 -25.81843 -24.44662 -23.43930 -22.18578 -21.27597 -20.67531 -19.97324 -19.76125 -18.46180 -17.97323 -17.53502 -17.17483 -16.91739 -16.87770 -16.54329 -16.44144 -16.05969 -15.77080 -15.42385 -15.18522 -15.11625 -14.92807 -14.63121 -14.29455 -14.08393 -13.92955 -13.58595 -13.48339 -13.45323 -13.26337 -13.21017 -13.06761 -12.86236 -12.72173 -12.45202 -12.20372 -12.17861 -12.13301 -11.90251 -11.82643 -11.56921 -11.52111 -11.32866 -11.14556 -10.82267 -10.40424 -10.04659 -9.77567 -9.45357 -8.48355 -5.97772 1.38828 1.38938 1.40761 1.52137 1.77460 2.01204 2.28047 2.88837 3.12809 3.18185 3.26593 3.37642 3.44018 3.54352 3.64456 3.76898 3.80011 3.89047 4.02160 4.15896 4.21751 4.22453 4.29918 4.37661 4.41576 4.45627 4.50090 4.56479 4.63363 4.67614 4.70153 4.77286 4.82656 4.92392 4.99660 5.02876 5.03829 5.12784 5.16497 5.30945 5.38743 5.40439 5.43542 5.77918 6.02013 6.23364 6.42283 6.56725 7.00903 7.09464 7.52308 8.06988 8.68930 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.021103 B = 0.002040 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.477874 B =13721.090412 C =14369.353530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.996 3.004 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.081 0.919 9 N -0.573 5.573 10 C 0.440 3.560 11 O -0.620 6.620 12 C 0.065 3.935 13 N -0.665 5.665 14 C 0.059 3.941 15 C 0.139 3.861 16 H 0.055 0.945 17 C -0.111 4.111 18 C -0.125 4.125 19 C 0.086 3.914 20 N -0.608 5.608 21 C 0.543 3.457 22 O -0.576 6.576 23 C -0.139 4.139 24 C 0.080 3.920 25 F -0.208 7.208 26 C -0.109 4.109 27 C -0.135 4.135 28 C -0.120 4.120 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.107 0.893 32 H 0.055 0.945 33 H 0.341 0.659 34 H 0.084 0.916 35 H 0.019 0.981 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.103 0.897 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.997 -30.340 3.491 30.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.819 3.181 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.099 0.901 9 N -0.210 5.210 10 C 0.227 3.773 11 O -0.506 6.506 12 C -0.067 4.067 13 N -0.297 5.297 14 C -0.071 4.071 15 C 0.035 3.965 16 H 0.073 0.927 17 C -0.150 4.150 18 C -0.163 4.163 19 C -0.035 4.035 20 N -0.341 5.341 21 C 0.332 3.668 22 O -0.455 6.455 23 C -0.143 4.143 24 C 0.025 3.975 25 F -0.189 7.189 26 C -0.147 4.147 27 C -0.172 4.172 28 C -0.158 4.158 29 H 0.088 0.912 30 H 0.230 0.770 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.159 0.841 34 H 0.102 0.898 35 H 0.037 0.963 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.129 0.871 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.130 0.870 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.117 0.883 46 H 0.121 0.879 47 H 0.096 0.904 48 H 0.094 0.906 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.417 -29.851 3.620 30.073 hybrid contribution -0.626 1.372 -1.383 2.046 sum -1.043 -28.480 2.238 28.586 Atomic orbital electron populations 1.69676 1.06916 1.29439 1.50156 1.26097 0.96584 1.02567 0.96166 0.84953 0.77733 0.76405 0.79030 1.19712 1.19463 1.19473 1.19654 0.92771 0.83924 1.50108 0.90133 1.41931 1.09333 1.04755 1.64949 1.20711 0.88224 0.85958 0.82387 1.90481 1.15617 1.87892 1.56639 1.21524 0.94026 0.88431 1.02744 1.60117 1.18754 1.00273 1.50540 1.22254 0.95773 0.88210 1.00849 1.21465 0.92626 0.82534 0.99887 0.92654 1.22541 0.99300 0.97569 0.95544 1.22845 0.95883 0.93569 1.03953 1.22877 0.97197 0.95744 0.87694 1.48643 1.43790 1.16281 1.25426 1.20282 0.78604 0.87167 0.80757 1.90715 1.66139 1.55222 1.33458 1.22822 0.99588 0.93082 0.98774 1.21995 1.00457 0.79778 0.95230 1.92734 1.90474 1.38789 1.96916 1.22830 0.97008 0.93684 1.01159 1.22973 0.96581 0.95480 1.02167 1.22875 0.98709 0.97637 0.96588 0.91244 0.77041 0.87528 0.92728 0.84072 0.89804 0.96267 0.90389 0.89937 0.90272 0.87082 0.88235 0.88774 0.86954 0.89660 0.90204 0.88299 0.87912 0.90414 0.90595 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.64 13.05 21.66 0.28 -50.35 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 3 Si 1.00 43.46 29.55 68.60 2.03 45.49 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.34 -19.40 9.68 84.04 0.81 -18.58 16 8 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 9 N -0.57 -30.30 5.29 -307.00 -1.62 -31.92 16 10 C 0.44 21.66 7.82 87.66 0.69 22.35 16 11 O -0.62 -34.98 15.78 -3.06 -0.05 -35.03 16 12 C 0.07 2.41 6.16 85.56 0.53 2.94 16 13 N -0.66 -22.21 5.93 -517.92 -3.07 -25.28 16 14 C 0.06 1.59 5.09 86.30 0.44 2.03 16 15 C 0.14 3.10 2.99 45.34 0.14 3.24 16 16 H 0.06 1.48 8.13 -2.38 -0.02 1.46 16 17 C -0.11 -1.92 6.26 31.78 0.20 -1.72 16 18 C -0.12 -1.19 7.08 31.99 0.23 -0.96 16 19 C 0.09 0.80 5.01 86.86 0.44 1.24 16 20 N -0.61 -11.02 3.05 -788.05 -2.41 -13.42 16 21 C 0.54 12.08 6.70 87.66 0.59 12.66 16 22 O -0.58 -18.54 15.10 -3.05 -0.05 -18.59 16 23 C -0.14 -2.14 0.76 -52.40 -0.04 -2.18 16 24 C 0.08 0.89 6.82 71.98 0.49 1.38 16 25 F -0.21 -2.66 14.57 44.97 0.66 -2.00 16 26 C -0.11 -1.33 6.38 31.12 0.20 -1.13 16 27 C -0.13 -1.69 7.57 31.12 0.24 -1.45 16 28 C -0.12 -2.06 6.97 31.12 0.22 -1.84 16 29 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.40 19.99 7.90 -92.71 -0.73 19.26 16 31 H 0.11 3.50 8.14 -2.38 -0.02 3.48 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.34 12.33 8.36 -89.69 -0.75 11.58 16 34 H 0.08 2.03 8.06 -2.38 -0.02 2.01 16 35 H 0.02 0.60 6.92 -2.39 -0.02 0.59 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.49 7.79 -2.39 -0.02 1.47 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.10 0.57 6.84 -2.39 -0.02 0.55 16 41 H 0.09 0.55 6.80 -2.39 -0.02 0.53 16 42 H 0.11 0.77 4.22 -2.39 -0.01 0.76 16 43 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 44 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 45 H 0.10 0.81 7.87 -2.39 -0.02 0.79 16 46 H 0.10 1.19 6.44 -2.39 -0.02 1.18 16 47 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.08 1.23 8.10 -2.38 -0.02 1.21 16 49 H 0.08 1.65 7.43 -2.39 -0.02 1.64 16 Total: -1.00 -74.10 389.82 0.90 -73.20 By element: Atomic # 1 Polarization: 40.77 SS G_CDS: -0.50 Total: 40.28 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 5.62 Total: 17.64 kcal Atomic # 7 Polarization: -114.17 SS G_CDS: -6.81 Total: -120.98 kcal Atomic # 8 Polarization: -53.53 SS G_CDS: -0.09 Total: -53.62 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.66 Total: -2.00 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -74.10 0.90 -73.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495578871.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.160 kcal (2) G-P(sol) polarization free energy of solvation -74.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds