Wall clock time and date at job start Sat Apr 11 2020 06:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86806 * 120.00232 * 2 1 4 4 H 1.48503 * 109.46817 * 269.99937 * 3 2 1 5 5 H 1.48499 * 109.47214 * 29.99674 * 3 2 1 6 6 H 1.48496 * 109.47460 * 150.00197 * 3 2 1 7 7 C 1.38950 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99992 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00079 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99770 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99834 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.46953 * 179.97438 * 12 10 9 14 14 C 1.46898 * 111.00165 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47622 * 179.97438 * 14 13 12 16 16 H 1.08995 * 110.00086 * 294.64320 * 15 14 13 17 17 C 1.54323 * 109.88648 * 173.54476 * 15 14 13 18 18 C 1.55156 * 102.94123 * 218.39146 * 17 15 14 19 19 C 1.54911 * 101.58571 * 35.50422 * 18 17 15 20 20 N 1.47297 * 109.87128 * 55.69865 * 15 14 13 21 21 C 1.34780 * 125.79184 * 298.35807 * 20 15 14 22 22 O 1.21286 * 119.99808 * 354.23713 * 21 20 15 23 23 C 1.50699 * 119.99820 * 174.23155 * 21 20 15 24 24 C 1.52999 * 112.85025 * 295.50971 * 23 21 20 25 25 F 1.39905 * 109.46945 * 302.19827 * 24 23 21 26 26 C 1.53776 * 113.61107 * 164.31091 * 23 21 20 27 27 C 1.53956 * 87.02069 * 220.04954 * 26 23 21 28 28 C 1.53777 * 87.11004 * 25.36397 * 27 26 23 29 29 H 0.96999 * 119.99552 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99919 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.47094 * 59.99947 * 12 10 9 32 32 H 1.09000 * 109.47077 * 299.99906 * 12 10 9 33 33 H 1.00906 * 111.00237 * 303.95160 * 13 12 10 34 34 H 1.09007 * 109.47484 * 59.99739 * 14 13 12 35 35 H 1.09007 * 109.47200 * 300.00214 * 14 13 12 36 36 H 1.08994 * 110.71880 * 100.03151 * 17 15 14 37 37 H 1.09001 * 110.71706 * 336.75329 * 17 15 14 38 38 H 1.08997 * 111.00734 * 277.42342 * 18 17 15 39 39 H 1.09004 * 111.00376 * 153.57450 * 18 17 15 40 40 H 1.08995 * 110.37125 * 81.82559 * 19 18 17 41 41 H 1.09003 * 110.37020 * 204.04573 * 19 18 17 42 42 H 1.09000 * 109.47122 * 62.19798 * 24 23 21 43 43 H 1.09001 * 109.47208 * 182.20647 * 24 23 21 44 44 H 1.08996 * 113.61762 * 334.57147 * 26 23 21 45 45 H 1.09003 * 113.61651 * 105.47274 * 26 23 21 46 46 H 1.09001 * 113.53389 * 270.81526 * 27 26 23 47 47 H 1.08993 * 113.74331 * 139.94681 * 27 26 23 48 48 H 1.08995 * 113.61814 * 220.09347 * 28 27 26 49 49 H 1.09003 * 113.69014 * 89.19499 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5458 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0016 10 6 1.9972 -3.5579 0.0026 11 8 3.2101 -3.5578 0.0022 12 6 1.2437 -4.8629 0.0032 13 7 2.1983 -5.9795 0.0037 14 6 1.4980 -7.2708 0.0037 15 6 2.5228 -8.4068 0.0036 16 1 3.0896 -8.3976 -0.9274 17 6 1.8037 -9.7625 0.1667 18 6 2.7642 -10.5563 1.0911 19 6 3.2988 -9.4370 2.0190 20 7 3.4379 -8.2558 1.1479 21 6 4.2644 -7.2133 1.3639 22 8 4.3740 -6.3426 0.5267 23 6 5.0523 -7.1296 2.6458 24 6 4.1627 -6.9760 3.8810 25 9 3.3696 -5.8315 3.7452 26 6 6.2110 -6.1200 2.5917 27 6 7.0397 -7.1507 3.3798 28 6 6.1179 -8.2294 2.7869 29 1 -0.4849 0.8401 0.0004 30 1 0.3534 -2.3906 0.0024 31 1 0.6173 -4.9212 -0.8870 32 1 0.6167 -4.9200 0.8930 33 1 2.8332 -5.9128 -0.7777 34 1 0.8733 -7.3454 -0.8865 35 1 0.8727 -7.3451 0.8935 36 1 1.6966 -10.2606 -0.7969 37 1 0.8325 -9.6290 0.6432 38 1 3.5736 -11.0084 0.5179 39 1 2.2227 -11.3111 1.6615 40 1 2.5873 -9.2360 2.8199 41 1 4.2667 -9.7182 2.4341 42 1 3.5221 -7.8525 3.9787 43 1 4.7874 -6.8817 4.7693 44 1 6.5847 -5.9377 1.5842 45 1 6.0156 -5.2010 3.1444 46 1 6.9501 -7.0461 4.4611 47 1 8.0744 -7.2292 3.0464 48 1 5.8473 -9.0109 3.4968 49 1 6.4650 -8.6259 1.8327 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499928504.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:40 Heat of formation + Delta-G solvation = -76.331201 kcal Electronic energy + Delta-G solvation = -32019.347293 eV Core-core repulsion = 27704.188849 eV Total energy + Delta-G solvation = -4315.158444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -47.38970 -40.55760 -38.72956 -37.89198 -36.61893 -34.91216 -33.57547 -31.69121 -31.01923 -30.20317 -28.65786 -26.71238 -25.75372 -25.07183 -24.44625 -23.28495 -22.07568 -21.36150 -19.56609 -18.99927 -18.47920 -17.68017 -17.14830 -16.64525 -16.13496 -15.80661 -15.74978 -15.39205 -15.00319 -14.59704 -14.35588 -14.18691 -14.06855 -13.86427 -13.78937 -13.55421 -13.19067 -13.15369 -12.58042 -12.51623 -12.47117 -12.12037 -11.97876 -11.71120 -11.48240 -11.44285 -11.43687 -11.30800 -11.21519 -11.01319 -10.96750 -10.85863 -10.78920 -10.39169 -10.34222 -10.26885 -10.04303 -9.30527 -9.06492 -8.43210 -8.06711 -7.74896 -7.53968 -6.23820 -3.62996 2.99863 3.23263 3.29266 3.35937 3.43411 4.15620 4.17934 4.22375 4.24174 4.34755 4.38520 4.48957 4.59986 4.66637 4.77441 4.94771 4.98273 5.01454 5.07399 5.21914 5.24801 5.34480 5.39792 5.40630 5.43178 5.46763 5.53886 5.61211 5.65225 5.66608 5.69741 5.72493 5.76965 5.87735 5.99060 6.01803 6.14855 6.18422 6.23848 6.32223 6.50079 6.56648 7.55266 7.72184 7.84260 8.09791 8.27403 8.75777 8.84344 9.38701 9.77166 10.31877 10.94896 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.013301 B = 0.003418 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.646659 B = 8190.651996 C = 9561.860864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.018 3.982 3 Si 0.927 3.073 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.290 4.290 8 H 0.101 0.899 9 N -0.574 5.574 10 C 0.446 3.554 11 O -0.561 6.561 12 C 0.050 3.950 13 N -0.643 5.643 14 C 0.048 3.952 15 C 0.143 3.857 16 H 0.070 0.930 17 C -0.126 4.126 18 C -0.131 4.131 19 C 0.096 3.904 20 N -0.616 5.616 21 C 0.543 3.457 22 O -0.456 6.456 23 C -0.134 4.134 24 C 0.093 3.907 25 F -0.197 7.197 26 C -0.105 4.105 27 C -0.145 4.145 28 C -0.118 4.118 29 H 0.268 0.732 30 H 0.390 0.610 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.358 0.642 34 H 0.028 0.972 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.734 -25.576 6.587 27.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.182 4.182 3 Si 0.755 3.245 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.420 4.420 8 H 0.119 0.881 9 N -0.213 5.213 10 C 0.231 3.769 11 O -0.443 6.443 12 C -0.083 4.083 13 N -0.279 5.279 14 C -0.083 4.083 15 C 0.039 3.961 16 H 0.088 0.912 17 C -0.165 4.165 18 C -0.169 4.169 19 C -0.028 4.028 20 N -0.354 5.354 21 C 0.329 3.671 22 O -0.324 6.324 23 C -0.138 4.138 24 C 0.038 3.962 25 F -0.178 7.178 26 C -0.142 4.142 27 C -0.182 4.182 28 C -0.156 4.156 29 H 0.078 0.922 30 H 0.222 0.778 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.181 0.819 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.115 0.885 45 H 0.095 0.905 46 H 0.100 0.900 47 H 0.091 0.909 48 H 0.092 0.908 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.675 -24.757 6.788 26.524 hybrid contribution -0.944 0.840 -0.799 1.495 sum 5.731 -23.917 5.989 25.313 Atomic orbital electron populations 1.69623 1.05852 1.27717 1.51860 1.25203 0.95598 0.99472 0.97973 0.85896 0.79253 0.81151 0.78201 1.20620 1.21081 1.19508 1.19682 0.93272 0.82385 1.46653 0.88137 1.41864 1.08982 1.04566 1.65865 1.19854 0.88573 0.84622 0.83815 1.90580 1.13363 1.86822 1.53498 1.21674 0.94509 0.91983 1.00170 1.60479 1.16657 0.98462 1.52301 1.22430 0.95335 0.90481 1.00039 1.21554 0.90380 0.93894 0.90282 0.91216 1.22654 0.98856 0.94283 1.00673 1.22750 0.99291 0.97029 0.97871 1.22348 1.00974 0.85688 0.93750 1.48355 1.41664 1.20504 1.24867 1.19462 0.79307 0.80293 0.88072 1.90798 1.60886 1.35689 1.44981 1.22699 0.95499 1.00972 0.94635 1.21613 0.92110 0.86171 0.96295 1.92899 1.75515 1.52384 1.97030 1.22787 0.92696 0.96639 1.02119 1.22940 0.98893 0.96422 0.99944 1.22879 0.95165 0.95696 1.01862 0.92191 0.77766 0.94849 0.90468 0.81928 0.95399 0.91450 0.90194 0.90374 0.90697 0.90089 0.92105 0.90726 0.90923 0.90442 0.88536 0.90477 0.90033 0.90875 0.90823 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.29 13.05 55.50 0.72 -25.56 16 2 C 0.02 0.51 5.50 -17.47 -0.10 0.41 16 3 Si 0.93 22.44 29.55 -169.99 -5.02 17.42 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.29 -8.71 9.68 -14.93 -0.14 -8.86 16 8 H 0.10 3.17 7.16 -52.48 -0.38 2.80 16 9 N -0.57 -15.94 5.29 -10.96 -0.06 -16.00 16 10 C 0.45 11.79 7.82 -10.98 -0.09 11.70 16 11 O -0.56 -16.85 15.78 5.55 0.09 -16.76 16 12 C 0.05 1.02 6.17 -4.98 -0.03 0.99 16 13 N -0.64 -12.22 3.14 -115.05 -0.36 -12.58 16 14 C 0.05 0.67 5.29 -3.83 -0.02 0.65 16 15 C 0.14 1.65 3.27 -66.80 -0.22 1.44 16 16 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 17 C -0.13 -0.95 6.48 -24.90 -0.16 -1.11 16 18 C -0.13 -0.80 7.08 -24.58 -0.17 -0.98 16 19 C 0.10 0.77 5.60 -2.53 -0.01 0.75 16 20 N -0.62 -7.48 3.07 -162.81 -0.50 -7.98 16 21 C 0.54 8.44 6.02 -10.98 -0.07 8.37 16 22 O -0.46 -9.35 12.63 5.55 0.07 -9.28 16 23 C -0.13 -1.68 0.57 -154.85 -0.09 -1.77 16 24 C 0.09 1.10 6.65 37.16 0.25 1.35 16 25 F -0.20 -3.51 17.13 2.25 0.04 -3.47 16 26 C -0.10 -1.41 6.92 -25.83 -0.18 -1.59 16 27 C -0.14 -1.30 7.74 -25.83 -0.20 -1.50 16 28 C -0.12 -1.01 5.66 -25.92 -0.15 -1.16 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.39 10.38 7.90 -40.82 -0.32 10.06 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.36 7.49 7.02 -39.29 -0.28 7.22 16 34 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.56 7.78 -51.93 -0.40 0.16 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.47 7.23 -51.93 -0.38 0.10 16 41 H 0.07 0.49 5.69 -51.93 -0.30 0.19 16 42 H 0.07 0.69 6.13 -51.93 -0.32 0.37 16 43 H 0.08 0.71 7.31 -51.93 -0.38 0.33 16 44 H 0.10 1.48 7.69 -51.93 -0.40 1.08 16 45 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 46 H 0.08 0.62 7.60 -51.93 -0.39 0.23 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 0.45 7.41 -51.93 -0.38 0.06 16 49 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 LS Contribution 388.00 15.07 5.85 5.85 Total: -1.00 -37.04 388.00 -8.26 -45.30 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -7.70 Total: 14.38 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -1.38 Total: 8.71 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -0.20 Total: -62.12 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: 0.16 Total: -26.05 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.04 Total: -3.47 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.04 -8.26 -45.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499928504.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.036 kcal (2) G-P(sol) polarization free energy of solvation -37.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds