Wall clock time and date at job start Sat Apr 11 2020 06:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86806 * 120.00232 * 2 1 4 4 H 1.48503 * 109.46817 * 269.99937 * 3 2 1 5 5 H 1.48499 * 109.47214 * 29.99674 * 3 2 1 6 6 H 1.48496 * 109.47460 * 150.00197 * 3 2 1 7 7 C 1.38950 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99992 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00079 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99770 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99834 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.46953 * 179.97438 * 12 10 9 14 14 C 1.46898 * 111.00165 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47622 * 179.97438 * 14 13 12 16 16 H 1.08995 * 110.00086 * 294.64320 * 15 14 13 17 17 C 1.54323 * 109.88648 * 173.54476 * 15 14 13 18 18 C 1.55156 * 102.94123 * 218.39146 * 17 15 14 19 19 C 1.54911 * 101.58571 * 35.50422 * 18 17 15 20 20 N 1.47297 * 109.87128 * 55.69865 * 15 14 13 21 21 C 1.34780 * 125.79184 * 298.35807 * 20 15 14 22 22 O 1.21286 * 119.99808 * 354.23713 * 21 20 15 23 23 C 1.50699 * 119.99820 * 174.23155 * 21 20 15 24 24 C 1.52999 * 112.85025 * 295.50971 * 23 21 20 25 25 F 1.39905 * 109.46945 * 302.19827 * 24 23 21 26 26 C 1.53776 * 113.61107 * 164.31091 * 23 21 20 27 27 C 1.53956 * 87.02069 * 220.04954 * 26 23 21 28 28 C 1.53777 * 87.11004 * 25.36397 * 27 26 23 29 29 H 0.96999 * 119.99552 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99919 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.47094 * 59.99947 * 12 10 9 32 32 H 1.09000 * 109.47077 * 299.99906 * 12 10 9 33 33 H 1.00906 * 111.00237 * 303.95160 * 13 12 10 34 34 H 1.09007 * 109.47484 * 59.99739 * 14 13 12 35 35 H 1.09007 * 109.47200 * 300.00214 * 14 13 12 36 36 H 1.08994 * 110.71880 * 100.03151 * 17 15 14 37 37 H 1.09001 * 110.71706 * 336.75329 * 17 15 14 38 38 H 1.08997 * 111.00734 * 277.42342 * 18 17 15 39 39 H 1.09004 * 111.00376 * 153.57450 * 18 17 15 40 40 H 1.08995 * 110.37125 * 81.82559 * 19 18 17 41 41 H 1.09003 * 110.37020 * 204.04573 * 19 18 17 42 42 H 1.09000 * 109.47122 * 62.19798 * 24 23 21 43 43 H 1.09001 * 109.47208 * 182.20647 * 24 23 21 44 44 H 1.08996 * 113.61762 * 334.57147 * 26 23 21 45 45 H 1.09003 * 113.61651 * 105.47274 * 26 23 21 46 46 H 1.09001 * 113.53389 * 270.81526 * 27 26 23 47 47 H 1.08993 * 113.74331 * 139.94681 * 27 26 23 48 48 H 1.08995 * 113.61814 * 220.09347 * 28 27 26 49 49 H 1.09003 * 113.69014 * 89.19499 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5458 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0016 10 6 1.9972 -3.5579 0.0026 11 8 3.2101 -3.5578 0.0022 12 6 1.2437 -4.8629 0.0032 13 7 2.1983 -5.9795 0.0037 14 6 1.4980 -7.2708 0.0037 15 6 2.5228 -8.4068 0.0036 16 1 3.0896 -8.3976 -0.9274 17 6 1.8037 -9.7625 0.1667 18 6 2.7642 -10.5563 1.0911 19 6 3.2988 -9.4370 2.0190 20 7 3.4379 -8.2558 1.1479 21 6 4.2644 -7.2133 1.3639 22 8 4.3740 -6.3426 0.5267 23 6 5.0523 -7.1296 2.6458 24 6 4.1627 -6.9760 3.8810 25 9 3.3696 -5.8315 3.7452 26 6 6.2110 -6.1200 2.5917 27 6 7.0397 -7.1507 3.3798 28 6 6.1179 -8.2294 2.7869 29 1 -0.4849 0.8401 0.0004 30 1 0.3534 -2.3906 0.0024 31 1 0.6173 -4.9212 -0.8870 32 1 0.6167 -4.9200 0.8930 33 1 2.8332 -5.9128 -0.7777 34 1 0.8733 -7.3454 -0.8865 35 1 0.8727 -7.3451 0.8935 36 1 1.6966 -10.2606 -0.7969 37 1 0.8325 -9.6290 0.6432 38 1 3.5736 -11.0084 0.5179 39 1 2.2227 -11.3111 1.6615 40 1 2.5873 -9.2360 2.8199 41 1 4.2667 -9.7182 2.4341 42 1 3.5221 -7.8525 3.9787 43 1 4.7874 -6.8817 4.7693 44 1 6.5847 -5.9377 1.5842 45 1 6.0156 -5.2010 3.1444 46 1 6.9501 -7.0461 4.4611 47 1 8.0744 -7.2292 3.0464 48 1 5.8473 -9.0109 3.4968 49 1 6.4650 -8.6259 1.8327 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499928504.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:39 Heat of formation + Delta-G solvation = -103.250709 kcal Electronic energy + Delta-G solvation = -32020.514610 eV Core-core repulsion = 27704.188849 eV Total energy + Delta-G solvation = -4316.325761 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.57935 -41.52496 -40.11419 -39.46712 -37.71701 -36.45552 -35.69545 -33.25460 -32.56568 -31.28226 -29.56618 -28.26634 -26.67901 -26.35660 -25.82225 -24.55192 -23.11399 -22.02871 -21.07421 -20.42530 -19.91031 -19.44970 -18.22635 -17.76405 -17.50284 -17.06689 -16.82233 -16.72285 -16.38226 -16.25945 -15.93351 -15.72739 -15.16517 -15.07052 -14.94146 -14.82485 -14.60547 -14.08706 -13.96427 -13.63087 -13.51304 -13.42663 -13.35575 -13.04540 -12.95965 -12.82700 -12.67660 -12.48497 -12.43840 -12.20837 -12.15188 -12.01301 -11.88021 -11.83290 -11.50401 -11.50077 -11.32380 -11.20115 -10.27336 -10.20588 -9.99754 -9.44619 -8.92724 -8.46994 -5.95375 1.35242 1.36636 1.51152 1.96225 2.08411 2.26170 2.28744 2.99007 3.19300 3.28576 3.36882 3.53923 3.64942 3.70795 3.80780 3.84430 3.96373 4.10192 4.13023 4.26270 4.27263 4.29888 4.36142 4.46864 4.49545 4.52296 4.60675 4.64907 4.67976 4.73206 4.79521 4.85552 4.92560 5.01809 5.02813 5.09347 5.14469 5.18740 5.20914 5.38515 5.41569 5.43236 5.65625 5.92842 6.20276 6.54900 6.62432 6.86344 7.13786 7.57191 7.66996 8.16121 8.71252 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.013301 B = 0.003418 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.646659 B = 8190.651996 C = 9561.860864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.015 4.015 3 Si 0.994 3.006 4 H -0.269 1.269 5 H -0.266 1.266 6 H -0.276 1.276 7 C -0.332 4.332 8 H 0.072 0.928 9 N -0.580 5.580 10 C 0.438 3.562 11 O -0.604 6.604 12 C 0.065 3.935 13 N -0.655 5.655 14 C 0.048 3.952 15 C 0.137 3.863 16 H 0.052 0.948 17 C -0.117 4.117 18 C -0.120 4.120 19 C 0.086 3.914 20 N -0.615 5.615 21 C 0.531 3.469 22 O -0.524 6.524 23 C -0.140 4.140 24 C 0.083 3.917 25 F -0.238 7.238 26 C -0.127 4.127 27 C -0.124 4.124 28 C -0.097 4.097 29 H 0.277 0.723 30 H 0.394 0.606 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.343 0.657 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.062 0.938 45 H 0.046 0.954 46 H 0.105 0.895 47 H 0.083 0.917 48 H 0.115 0.885 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.137 -28.570 8.187 30.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.194 1.194 5 H -0.190 1.190 6 H -0.201 1.201 7 C -0.461 4.461 8 H 0.090 0.910 9 N -0.218 5.218 10 C 0.225 3.775 11 O -0.489 6.489 12 C -0.068 4.068 13 N -0.290 5.290 14 C -0.082 4.082 15 C 0.033 3.967 16 H 0.070 0.930 17 C -0.155 4.155 18 C -0.157 4.157 19 C -0.036 4.036 20 N -0.351 5.351 21 C 0.319 3.681 22 O -0.397 6.397 23 C -0.144 4.144 24 C 0.029 3.971 25 F -0.219 7.219 26 C -0.165 4.165 27 C -0.162 4.162 28 C -0.134 4.134 29 H 0.087 0.913 30 H 0.227 0.773 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.164 0.836 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.128 0.872 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.122 0.878 43 H 0.127 0.873 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.123 0.877 47 H 0.102 0.898 48 H 0.133 0.867 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.018 -27.823 8.412 29.683 hybrid contribution -0.786 1.756 -1.320 2.333 sum 5.231 -26.067 7.092 27.517 Atomic orbital electron populations 1.69684 1.06789 1.29182 1.50822 1.26047 0.96618 1.02323 0.96422 0.84923 0.77771 0.76816 0.78740 1.19415 1.19049 1.20130 1.19620 0.92451 0.84230 1.49816 0.90980 1.41923 1.09046 1.04662 1.66183 1.20908 0.88462 0.86131 0.82031 1.90555 1.15573 1.87693 1.55034 1.21507 0.94189 0.89564 1.01550 1.60464 1.16651 0.99912 1.51953 1.22578 0.96040 0.88830 1.00761 1.21692 0.89940 0.95318 0.89776 0.92951 1.22647 0.98984 0.91679 1.02180 1.22766 0.99169 0.96579 0.97231 1.22702 1.02600 0.84490 0.93831 1.48438 1.40321 1.20830 1.25489 1.20105 0.79456 0.80142 0.88417 1.90775 1.63304 1.38374 1.47216 1.22803 0.95537 1.02386 0.93625 1.22069 0.92573 0.85539 0.96948 1.92814 1.76816 1.55014 1.97255 1.22805 0.95761 0.97156 1.00817 1.22912 0.98897 0.93793 1.00558 1.22831 0.92465 0.95440 1.02704 0.91324 0.77294 0.92692 0.89359 0.83595 0.93911 0.91064 0.88644 0.89514 0.90158 0.87188 0.91208 0.88694 0.87835 0.87278 0.91970 0.93491 0.87687 0.89834 0.86652 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.55 13.05 21.66 0.28 -53.27 16 2 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 3 Si 0.99 46.50 29.55 68.60 2.03 48.53 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.33 -20.84 9.68 84.04 0.81 -20.03 16 8 H 0.07 4.86 7.16 -2.91 -0.02 4.84 16 9 N -0.58 -33.69 5.29 -306.98 -1.62 -35.31 16 10 C 0.44 24.46 7.82 87.66 0.69 25.14 16 11 O -0.60 -39.08 15.78 -3.05 -0.05 -39.13 16 12 C 0.06 2.75 6.17 85.56 0.53 3.28 16 13 N -0.65 -26.07 3.14 -517.92 -1.63 -27.70 16 14 C 0.05 1.32 5.29 86.30 0.46 1.78 16 15 C 0.14 3.07 3.27 45.29 0.15 3.22 16 16 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 17 C -0.12 -1.38 6.48 31.78 0.21 -1.18 16 18 C -0.12 -0.95 7.08 31.99 0.23 -0.72 16 19 C 0.09 1.07 5.60 86.86 0.49 1.55 16 20 N -0.61 -14.41 3.07 -787.40 -2.42 -16.83 16 21 C 0.53 17.12 6.02 87.66 0.53 17.65 16 22 O -0.52 -23.40 12.63 -3.05 -0.04 -23.44 16 23 C -0.14 -3.47 0.57 -52.40 -0.03 -3.50 16 24 C 0.08 1.86 6.65 71.98 0.48 2.34 16 25 F -0.24 -8.75 17.13 44.97 0.77 -7.98 16 26 C -0.13 -3.70 6.92 31.18 0.22 -3.48 16 27 C -0.12 -2.02 7.74 31.18 0.24 -1.78 16 28 C -0.10 -1.40 5.66 31.12 0.18 -1.23 16 29 H 0.28 14.94 8.31 -92.71 -0.77 14.17 16 30 H 0.39 21.71 7.90 -92.71 -0.73 20.98 16 31 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 33 H 0.34 15.48 7.02 -89.69 -0.63 14.85 16 34 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.07 1.91 8.04 -2.38 -0.02 1.89 16 36 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 0.93 7.78 -2.39 -0.02 0.91 16 38 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.07 0.79 7.23 -2.39 -0.02 0.78 16 41 H 0.09 0.80 5.69 -2.39 -0.01 0.79 16 42 H 0.10 1.63 6.13 -2.39 -0.01 1.61 16 43 H 0.11 1.72 7.31 -2.39 -0.02 1.70 16 44 H 0.06 2.18 7.69 -2.39 -0.02 2.16 16 45 H 0.05 1.57 8.10 -2.39 -0.02 1.56 16 46 H 0.10 1.25 7.60 -2.39 -0.02 1.23 16 47 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.12 0.76 7.41 -2.39 -0.02 0.74 16 49 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 Total: -1.00 -89.32 388.00 2.57 -86.75 By element: Atomic # 1 Polarization: 46.13 SS G_CDS: -0.38 Total: 45.75 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 5.63 Total: 22.62 kcal Atomic # 7 Polarization: -127.72 SS G_CDS: -5.39 Total: -133.11 kcal Atomic # 8 Polarization: -62.48 SS G_CDS: -0.09 Total: -62.57 kcal Atomic # 9 Polarization: -8.75 SS G_CDS: 0.77 Total: -7.98 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -89.32 2.57 -86.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499928504.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.502 kcal (2) G-P(sol) polarization free energy of solvation -89.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds