Wall clock time and date at job start Sat Apr 11 2020 06:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99933 * 2 1 4 4 H 1.48501 * 109.46957 * 269.99551 * 3 2 1 5 5 H 1.48493 * 109.47293 * 29.99934 * 3 2 1 6 6 H 1.48501 * 109.46899 * 150.00226 * 3 2 1 7 7 C 1.38812 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00427 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99974 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00317 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47494 * 185.01185 * 10 9 7 12 12 H 1.09004 * 109.99672 * 306.32719 * 11 10 9 13 13 C 1.54331 * 109.88369 * 67.41869 * 11 10 9 14 14 C 1.55157 * 102.93983 * 141.61320 * 13 11 10 15 15 C 1.55131 * 101.48730 * 324.33212 * 14 13 11 16 16 N 1.47021 * 109.88431 * 185.23040 * 11 10 9 17 17 C 1.34776 * 125.64943 * 61.60211 * 16 11 10 18 18 O 1.21277 * 119.99899 * 355.07867 * 17 16 11 19 19 C 1.50697 * 119.99904 * 175.07973 * 17 16 11 20 20 C 1.53000 * 109.47022 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.47442 * 179.97438 * 20 19 17 22 22 C 1.34239 * 126.50606 * 265.00679 * 21 20 19 23 23 N 1.36825 * 109.92953 * 179.97438 * 22 21 20 24 24 H 0.96999 * 125.06231 * 180.02562 * 23 22 21 25 25 C 1.37684 * 109.87478 * 359.97438 * 23 22 21 26 26 C 1.39133 * 133.50779 * 179.97438 * 25 23 22 27 27 C 1.37742 * 119.77823 * 180.02562 * 26 25 23 28 28 C 1.38834 * 120.66827 * 359.97438 * 27 26 25 29 29 C 1.36617 * 120.52693 * 0.02567 * 28 27 26 30 30 C 1.39630 * 119.76282 * 359.97091 * 29 28 27 31 31 H 0.96996 * 120.00144 * 0.02562 * 1 2 3 32 32 H 0.97001 * 120.00148 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47344 * 65.00365 * 10 9 7 34 34 H 1.09007 * 109.46477 * 305.00744 * 10 9 7 35 35 H 1.08995 * 110.71719 * 259.97644 * 13 11 10 36 36 H 1.08999 * 110.71443 * 23.25235 * 13 11 10 37 37 H 1.08998 * 111.00664 * 82.57627 * 14 13 11 38 38 H 1.09001 * 111.00178 * 206.39027 * 14 13 11 39 39 H 1.09000 * 110.49510 * 278.45677 * 15 14 13 40 40 H 1.08996 * 110.34360 * 156.06524 * 15 14 13 41 41 H 1.08999 * 109.47665 * 60.00126 * 19 17 16 42 42 H 1.09002 * 109.47198 * 299.99500 * 19 17 16 43 43 H 1.09004 * 109.47385 * 59.99935 * 20 19 17 44 44 H 1.08995 * 109.47557 * 300.00131 * 20 19 17 45 45 H 1.08001 * 125.02934 * 0.02562 * 22 21 20 46 46 H 1.08007 * 120.10834 * 0.02829 * 26 25 23 47 47 H 1.08002 * 119.66664 * 180.27716 * 27 26 25 48 48 H 1.07998 * 119.73549 * 179.97438 * 28 27 26 49 49 H 1.08001 * 120.11988 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0687 -4.8170 -0.1246 12 1 0.3041 -4.7407 0.6485 13 6 0.4088 -4.7947 -1.5195 14 6 0.3141 -6.3000 -1.8832 15 6 1.6205 -6.8524 -1.2550 16 7 1.7807 -6.0972 0.0010 17 6 2.4705 -6.5096 1.0830 18 8 2.6159 -5.7651 2.0293 19 6 3.0610 -7.8956 1.1168 20 6 3.7875 -8.1080 2.4464 21 6 4.3775 -9.4943 2.4807 22 6 3.8167 -10.5879 3.0207 23 7 4.6459 -11.6645 2.8611 24 1 4.4561 -12.5645 3.1692 25 6 5.7893 -11.2803 2.1973 26 6 6.9323 -11.9590 1.7866 27 6 7.9312 -11.2791 1.1253 28 6 7.8097 -9.9212 0.8630 29 6 6.6960 -9.2352 1.2572 30 6 5.6711 -9.9046 1.9289 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 2.6151 -3.7540 0.9335 34 1 2.7509 -3.6770 -0.8396 35 1 -0.5837 -4.3468 -1.4694 36 1 1.0370 -4.2638 -2.2348 37 1 -0.5653 -6.7570 -1.4295 38 1 0.3116 -6.4413 -2.9640 39 1 2.4679 -6.6726 -1.9165 40 1 1.5200 -7.9176 -1.0470 41 1 3.7677 -8.0097 0.2948 42 1 2.2642 -8.6326 1.0160 43 1 3.0812 -7.9938 3.2688 44 1 4.5843 -7.3711 2.5470 45 1 2.8532 -10.6140 3.5080 46 1 7.0360 -13.0155 1.9857 47 1 8.8157 -11.8087 0.8034 48 1 8.6023 -9.4030 0.3438 49 1 6.6085 -8.1789 1.0500 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499947506.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:44 Heat of formation + Delta-G solvation = 7.210460 kcal Electronic energy + Delta-G solvation = -28712.236547 eV Core-core repulsion = 24831.469966 eV Total energy + Delta-G solvation = -3880.766581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.15148 -41.19316 -38.71321 -37.77276 -36.42331 -35.10246 -33.51171 -32.63847 -31.80531 -30.41100 -30.16962 -29.29406 -26.73848 -25.83746 -24.40561 -23.70353 -23.22034 -22.62839 -21.75799 -20.26011 -20.04002 -19.07937 -18.69122 -17.87206 -17.52986 -17.24462 -16.51296 -16.45537 -16.20323 -15.84523 -15.40615 -15.20067 -15.07168 -15.03264 -14.87898 -14.67486 -14.30937 -14.12112 -13.78495 -13.59480 -13.35204 -13.28204 -13.04022 -12.97549 -12.83411 -12.73610 -12.53780 -12.51538 -12.21745 -12.02407 -11.94476 -11.91369 -11.78945 -11.60687 -11.55827 -11.02980 -10.78130 -10.44673 -9.63357 -9.10677 -9.04897 -8.52096 -7.98781 -5.28565 0.24854 0.73783 1.43652 1.46683 1.55345 1.67671 1.72070 2.05573 2.32006 2.54404 3.02183 3.33287 3.50119 3.67579 3.84276 3.87650 3.95610 3.95916 4.11038 4.15536 4.23935 4.29661 4.30757 4.36544 4.41595 4.51450 4.52776 4.57463 4.67057 4.75761 4.78696 4.87799 4.92466 4.96660 5.00232 5.05620 5.10254 5.15594 5.15626 5.24521 5.33318 5.36958 5.41886 5.50858 5.62444 5.74777 5.82928 5.88298 6.22760 6.28819 6.62969 6.77652 7.23667 7.29133 8.00629 8.28569 9.24504 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015029 B = 0.002160 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.558534 B =12958.157852 C =13739.198023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.977 3.023 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.736 5.736 10 C 0.153 3.847 11 C 0.136 3.864 12 H 0.051 0.949 13 C -0.118 4.118 14 C -0.119 4.119 15 C 0.096 3.904 16 N -0.614 5.614 17 C 0.514 3.486 18 O -0.586 6.586 19 C -0.108 4.108 20 C -0.021 4.021 21 C -0.194 4.194 22 C 0.070 3.930 23 N -0.585 5.585 24 H 0.431 0.569 25 C 0.079 3.921 26 C -0.133 4.133 27 C -0.107 4.107 28 C -0.153 4.153 29 C -0.095 4.095 30 C -0.126 4.126 31 H 0.254 0.746 32 H 0.376 0.624 33 H 0.003 0.997 34 H 0.018 0.982 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.077 0.923 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.121 0.879 43 H 0.071 0.929 44 H 0.049 0.951 45 H 0.201 0.799 46 H 0.143 0.857 47 H 0.148 0.852 48 H 0.134 0.866 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.581 -33.428 -1.093 34.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.805 3.195 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.380 5.380 10 C 0.025 3.975 11 C 0.032 3.968 12 H 0.069 0.931 13 C -0.156 4.156 14 C -0.156 4.156 15 C -0.026 4.026 16 N -0.348 5.348 17 C 0.305 3.695 18 O -0.466 6.466 19 C -0.148 4.148 20 C -0.059 4.059 21 C -0.201 4.201 22 C -0.057 4.057 23 N -0.189 5.189 24 H 0.271 0.729 25 C -0.029 4.029 26 C -0.154 4.154 27 C -0.126 4.126 28 C -0.172 4.172 29 C -0.113 4.113 30 C -0.130 4.130 31 H 0.063 0.937 32 H 0.208 0.792 33 H 0.021 0.979 34 H 0.036 0.964 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.128 0.872 39 H 0.095 0.905 40 H 0.129 0.871 41 H 0.120 0.880 42 H 0.139 0.861 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.217 0.783 46 H 0.161 0.839 47 H 0.166 0.834 48 H 0.152 0.848 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.804 -33.120 -0.466 34.273 hybrid contribution -0.023 1.362 0.434 1.430 sum 8.781 -31.758 -0.033 32.950 Atomic orbital electron populations 1.69808 1.06454 1.26275 1.59062 1.25586 0.96558 1.01039 1.03252 0.85095 0.77474 0.79157 0.77746 1.20655 1.21646 1.20091 1.19540 0.91178 0.85420 1.42009 0.91583 1.42332 1.05500 1.00692 1.89452 1.20959 0.94130 0.85522 0.96890 1.21527 0.93026 0.83392 0.98889 0.93111 1.22570 1.00793 0.98805 0.93466 1.22849 0.97350 0.92622 1.02809 1.22689 0.98661 0.97396 0.83811 1.48734 1.51767 1.18452 1.15889 1.21325 0.77195 0.90456 0.80562 1.90726 1.60265 1.58028 1.37576 1.21595 1.01561 0.91138 1.00512 1.19443 0.98483 0.91747 0.96265 1.20199 0.95502 0.95442 1.08963 1.22069 0.97120 0.85202 1.01328 1.41727 1.14966 1.11659 1.50499 0.72933 1.18487 0.90475 0.94042 0.99878 1.20357 0.91958 1.00538 1.02515 1.21144 0.98998 0.94214 0.98249 1.20907 0.98283 0.95313 1.02735 1.20463 0.93339 0.99636 0.97899 1.19386 0.96188 0.93603 1.03851 0.93745 0.79194 0.97910 0.96445 0.90615 0.91411 0.89466 0.87202 0.90466 0.87133 0.87965 0.86144 0.91069 0.93248 0.78263 0.83936 0.83415 0.84825 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.09 13.06 21.65 0.28 -60.81 16 2 C -0.07 -4.35 5.50 84.86 0.47 -3.89 16 3 Si 0.98 48.45 29.55 68.60 2.03 50.48 16 4 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 7 C -0.25 -15.18 9.99 84.03 0.84 -14.34 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 9 N -0.74 -41.27 5.42 -343.44 -1.86 -43.13 16 10 C 0.15 7.26 5.66 86.38 0.49 7.75 16 11 C 0.14 5.02 2.94 45.34 0.13 5.15 16 12 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 13 C -0.12 -3.50 6.23 31.78 0.20 -3.30 16 14 C -0.12 -2.16 7.10 32.06 0.23 -1.93 16 15 C 0.10 1.77 6.75 86.93 0.59 2.36 16 16 N -0.61 -18.04 3.06 -787.61 -2.41 -20.46 16 17 C 0.51 16.18 7.66 87.66 0.67 16.86 16 18 O -0.59 -25.00 14.77 -3.02 -0.04 -25.05 16 19 C -0.11 -2.25 4.61 29.85 0.14 -2.11 16 20 C -0.02 -0.48 5.03 29.85 0.15 -0.33 16 21 C -0.19 -3.80 5.57 -18.62 -0.10 -3.91 16 22 C 0.07 0.94 11.73 83.00 0.97 1.91 16 23 N -0.58 -6.92 6.07 -187.62 -1.14 -8.06 16 24 H 0.43 2.11 8.96 -92.71 -0.83 1.28 16 25 C 0.08 1.35 7.28 39.03 0.28 1.64 16 26 C -0.13 -1.89 10.08 22.37 0.23 -1.66 16 27 C -0.11 -1.53 10.01 22.30 0.22 -1.31 16 28 C -0.15 -2.67 9.97 22.03 0.22 -2.45 16 29 C -0.09 -2.02 10.05 22.23 0.22 -1.80 16 30 C -0.13 -2.69 6.35 -20.20 -0.13 -2.82 16 31 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 32 H 0.38 21.73 7.61 -92.71 -0.71 21.02 16 33 H 0.00 0.16 6.55 -2.39 -0.02 0.15 16 34 H 0.02 0.83 8.02 -2.38 -0.02 0.81 16 35 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.07 2.20 7.76 -2.39 -0.02 2.18 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.11 1.28 7.48 -2.39 -0.02 1.26 16 41 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.12 1.76 7.96 -2.39 -0.02 1.74 16 43 H 0.07 1.68 8.10 -2.38 -0.02 1.66 16 44 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 45 H 0.20 1.34 8.06 -2.91 -0.02 1.32 16 46 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 47 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 48 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 49 H 0.11 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -83.60 401.61 2.10 -81.50 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: -0.57 Total: 29.70 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 5.82 Total: -4.17 kcal Atomic # 7 Polarization: -127.33 SS G_CDS: -5.13 Total: -132.46 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.04 Total: -25.05 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.03 Total: 50.48 kcal Total: -83.60 2.10 -81.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499947506.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.706 kcal (2) G-P(sol) polarization free energy of solvation -83.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds