Wall clock time and date at job start Sat Apr 11 2020 06:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 119.99881 * 2 1 4 4 H 1.48506 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00145 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00138 * 3 2 1 7 7 C 1.38809 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99940 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99795 * 180.02562 * 9 7 2 11 11 C 1.53012 * 109.46866 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.84661 * 45.33137 * 11 10 9 13 13 C 1.53776 * 113.61120 * 176.52859 * 11 10 9 14 14 C 1.53776 * 87.08140 * 139.98110 * 13 11 10 15 15 H 1.09003 * 113.61603 * 220.01858 * 14 13 11 16 16 N 1.46499 * 113.61864 * 89.11343 * 14 13 11 17 17 C 1.34771 * 120.00526 * 155.00336 * 16 14 13 18 18 O 1.21283 * 119.99706 * 359.97438 * 17 16 14 19 19 C 1.50705 * 120.00364 * 180.02562 * 17 16 14 20 20 C 1.52994 * 109.47137 * 179.97438 * 19 17 16 21 21 C 1.50705 * 109.47137 * 179.97438 * 20 19 17 22 22 C 1.38828 * 119.73367 * 89.99706 * 21 20 19 23 23 C 1.37750 * 120.66297 * 179.97438 * 22 21 20 24 24 C 1.39124 * 119.77671 * 0.02562 * 23 22 21 25 25 N 1.37692 * 133.50017 * 179.97438 * 24 23 22 26 26 H 0.96996 * 125.06622 * 0.02562 * 25 24 23 27 27 C 1.36827 * 109.86931 * 180.02562 * 25 24 23 28 28 C 1.34235 * 109.93440 * 0.02562 * 27 25 24 29 29 C 1.40669 * 119.33918 * 0.02562 * 24 23 22 30 30 C 1.36622 * 119.73247 * 269.72679 * 21 20 19 31 31 C 1.53780 * 113.61066 * 274.13381 * 11 10 9 32 32 H 0.97004 * 120.00335 * 180.02562 * 1 2 3 33 33 H 0.96997 * 120.00183 * 359.97438 * 9 7 2 34 34 H 1.08994 * 109.47375 * 299.99261 * 10 9 7 35 35 H 1.08995 * 109.47778 * 59.99907 * 10 9 7 36 36 H 1.09006 * 113.61201 * 254.52524 * 13 11 10 37 37 H 1.09000 * 113.61830 * 25.34704 * 13 11 10 38 38 H 0.97009 * 120.00063 * 335.00210 * 16 14 13 39 39 H 1.08997 * 109.46911 * 300.00111 * 19 17 16 40 40 H 1.09004 * 109.46754 * 59.99763 * 19 17 16 41 41 H 1.09006 * 109.46943 * 299.99531 * 20 19 17 42 42 H 1.08992 * 109.47367 * 59.99910 * 20 19 17 43 43 H 1.08000 * 119.67506 * 0.02562 * 22 21 20 44 44 H 1.08000 * 120.10869 * 180.02562 * 23 22 21 45 45 H 1.08007 * 125.03148 * 179.97438 * 27 25 24 46 46 H 1.07998 * 126.50525 * 179.97438 * 28 27 25 47 47 H 1.08000 * 120.11745 * 359.97438 * 30 21 20 48 48 H 1.08997 * 113.61404 * 334.56614 * 31 11 10 49 49 H 1.08997 * 113.61422 * 105.47538 * 31 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 1.2125 6 1 1.8914 2.3965 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 6 1.0638 -4.8197 -0.0022 12 1 0.2523 -4.6824 -0.7169 13 6 1.7326 -6.2018 -0.0876 14 6 0.6859 -6.6841 0.9305 15 1 1.0891 -7.3607 1.6840 16 7 -0.5450 -7.1853 0.3141 17 6 -1.3155 -8.0733 0.9730 18 8 -0.9896 -8.4578 2.0762 19 6 -2.5814 -8.5893 0.3387 20 6 -3.2620 -9.5767 1.2887 21 6 -4.5283 -10.0923 0.6547 22 6 -4.4880 -11.2342 -0.1338 23 6 -5.6338 -11.7225 -0.7221 24 6 -6.8447 -11.0662 -0.5261 25 7 -8.1294 -11.2963 -0.9649 26 1 -8.3997 -12.0318 -1.5364 27 6 -8.9679 -10.3326 -0.4744 28 6 -8.2759 -9.4646 0.2802 29 6 -6.8800 -9.9089 0.2728 30 6 -5.7075 -9.4352 0.8649 31 6 0.5858 -5.2222 1.4029 32 1 -0.4851 -0.8401 0.0004 33 1 0.3556 -2.3881 -0.0016 34 1 2.6853 -3.7141 -0.8911 35 1 2.6841 -3.7149 0.8888 36 1 1.6389 -6.6725 -1.0663 37 1 2.7537 -6.2171 0.2934 38 1 -0.8055 -6.8781 -0.5684 39 1 -3.2536 -7.7551 0.1384 40 1 -2.3394 -9.0937 -0.5968 41 1 -2.5895 -10.4110 1.4886 42 1 -3.5038 -9.0728 2.2244 43 1 -3.5490 -11.7455 -0.2868 44 1 -5.5923 -12.6119 -1.3334 45 1 -10.0294 -10.2780 -0.6668 46 1 -8.6728 -8.6022 0.7950 47 1 -5.7320 -8.5502 1.4834 48 1 1.2923 -4.9695 2.1934 49 1 -0.4323 -4.9032 1.6257 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506891630.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:53 Heat of formation + Delta-G solvation = 40.323841 kcal Electronic energy + Delta-G solvation = -27468.914785 eV Core-core repulsion = 23589.584108 eV Total energy + Delta-G solvation = -3879.330677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.52326 -40.24910 -38.57804 -37.64901 -34.76827 -33.52293 -33.11976 -32.14774 -30.76043 -29.16332 -29.02252 -26.61634 -25.53971 -24.78697 -23.19771 -22.87914 -21.67049 -21.39503 -20.85674 -20.29629 -19.07270 -18.38297 -17.31799 -17.17327 -16.48360 -15.98703 -15.74663 -15.23225 -14.92641 -14.79365 -14.60587 -14.51228 -14.08433 -13.80096 -13.64307 -13.57309 -13.42531 -13.21158 -12.98503 -12.87752 -12.74426 -12.44043 -12.20055 -11.72417 -11.64378 -11.48685 -11.36185 -11.00685 -10.70375 -10.66458 -10.50376 -10.26816 -10.06601 -10.01974 -9.95442 -9.87184 -9.13020 -8.99079 -8.82039 -8.43249 -8.03240 -6.95198 -6.07559 -3.06271 0.83131 1.29372 2.39305 2.57985 2.77618 3.08797 3.53455 3.60162 3.60419 3.69837 4.35066 4.46743 4.53349 4.65084 4.66074 4.77716 4.79168 4.81769 4.87952 5.02964 5.04869 5.08437 5.10355 5.18068 5.26904 5.38453 5.52039 5.60830 5.64493 5.69872 5.71299 5.83010 5.83476 5.90198 5.92924 5.96955 6.04072 6.11285 6.19388 6.23772 6.35254 6.37312 6.44429 6.48337 6.61712 6.73384 6.85026 6.88769 7.15205 7.45852 7.85167 8.18058 8.79407 9.27753 10.14095 10.29602 11.41457 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.001657 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.293398 B =16898.285203 C =18369.708873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.048 4.048 3 Si 1.086 2.914 4 H -0.295 1.295 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.331 4.331 8 H 0.065 0.935 9 N -0.743 5.743 10 C 0.168 3.832 11 C -0.115 4.115 12 H 0.085 0.915 13 C -0.137 4.137 14 C 0.116 3.884 15 H 0.099 0.901 16 N -0.711 5.711 17 C 0.514 3.486 18 O -0.543 6.543 19 C -0.135 4.135 20 C -0.059 4.059 21 C -0.108 4.108 22 C -0.091 4.091 23 C -0.130 4.130 24 C 0.090 3.910 25 N -0.599 5.599 26 H 0.414 0.586 27 C 0.047 3.953 28 C -0.204 4.204 29 C -0.108 4.108 30 C -0.065 4.065 31 C -0.139 4.139 32 H 0.255 0.745 33 H 0.366 0.634 34 H 0.019 0.981 35 H 0.021 0.979 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.401 0.599 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.125 0.875 44 H 0.119 0.881 45 H 0.169 0.831 46 H 0.147 0.853 47 H 0.123 0.877 48 H 0.090 0.910 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.956 -28.074 -3.059 31.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.245 4.245 3 Si 0.917 3.083 4 H -0.221 1.221 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.462 4.462 8 H 0.083 0.917 9 N -0.389 5.389 10 C 0.040 3.960 11 C -0.134 4.134 12 H 0.104 0.896 13 C -0.176 4.176 14 C 0.011 3.989 15 H 0.117 0.883 16 N -0.362 5.362 17 C 0.301 3.699 18 O -0.420 6.420 19 C -0.175 4.175 20 C -0.097 4.097 21 C -0.109 4.109 22 C -0.111 4.111 23 C -0.151 4.151 24 C -0.017 4.017 25 N -0.202 5.202 26 H 0.250 0.750 27 C -0.079 4.079 28 C -0.229 4.229 29 C -0.113 4.113 30 C -0.084 4.084 31 C -0.178 4.178 32 H 0.066 0.934 33 H 0.199 0.801 34 H 0.036 0.964 35 H 0.039 0.961 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.236 0.764 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.143 0.857 44 H 0.137 0.863 45 H 0.187 0.813 46 H 0.164 0.836 47 H 0.141 0.859 48 H 0.108 0.892 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.683 -26.778 -2.328 30.628 hybrid contribution -0.471 -1.747 -0.843 1.997 sum -15.154 -28.525 -3.171 32.456 Atomic orbital electron populations 1.70812 1.06042 1.28418 1.53942 1.25777 0.97093 1.01011 1.00610 0.83142 0.73534 0.75022 0.76587 1.22141 1.22027 1.22042 1.20121 0.92075 0.85929 1.48062 0.91744 1.42356 1.04835 1.00994 1.90676 1.20573 0.92916 0.84730 0.97755 1.22771 0.98981 0.94425 0.97230 0.89634 1.23292 0.98788 0.96459 0.99052 1.21949 0.84830 0.95699 0.96448 0.88289 1.45744 1.24261 1.44967 1.21236 1.20738 0.85077 0.78329 0.85766 1.90699 1.72731 1.58522 1.20033 1.21685 0.94693 1.00780 1.00384 1.20252 0.93118 0.98674 0.97616 1.19353 0.94850 0.96498 1.00188 1.20735 0.97341 0.96042 0.96940 1.19993 0.89927 1.01087 1.04061 1.18294 0.85806 0.97797 0.99799 1.41798 1.06049 1.26579 1.45758 0.74953 1.21824 0.96132 0.90716 0.99235 1.21756 0.91643 1.02842 1.06637 1.19221 0.94109 0.96592 1.01339 1.20208 0.90313 0.99248 0.98613 1.23438 1.02254 0.94434 0.97648 0.93382 0.80099 0.96368 0.96144 0.91259 0.88746 0.76432 0.88624 0.88806 0.90309 0.90237 0.85665 0.86343 0.81341 0.83577 0.85883 0.89178 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.79 13.70 55.49 0.76 -29.03 16 2 C -0.05 -1.41 5.50 -17.43 -0.10 -1.51 16 3 Si 1.09 26.50 29.92 -169.99 -5.09 21.42 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.33 -9.59 9.99 -15.06 -0.15 -9.74 16 8 H 0.06 1.85 7.83 -52.48 -0.41 1.43 16 9 N -0.74 -19.14 5.60 -59.91 -0.34 -19.48 16 10 C 0.17 3.42 6.08 -4.04 -0.02 3.39 16 11 C -0.12 -1.80 3.62 -89.80 -0.33 -2.12 16 12 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 13 C -0.14 -1.68 7.39 -25.92 -0.19 -1.87 16 14 C 0.12 1.48 4.33 -67.03 -0.29 1.19 16 15 H 0.10 1.35 7.47 -51.93 -0.39 0.97 16 16 N -0.71 -7.94 5.26 -52.93 -0.28 -8.22 16 17 C 0.51 6.14 7.83 -10.99 -0.09 6.06 16 18 O -0.54 -8.55 15.58 5.55 0.09 -8.46 16 19 C -0.14 -1.17 5.68 -27.88 -0.16 -1.33 16 20 C -0.06 -0.54 4.62 -27.88 -0.13 -0.67 16 21 C -0.11 -0.97 5.10 -104.99 -0.54 -1.51 16 22 C -0.09 -0.75 9.66 -39.54 -0.38 -1.13 16 23 C -0.13 -1.03 10.08 -39.43 -0.40 -1.43 16 24 C 0.09 0.80 7.28 -83.99 -0.61 0.18 16 25 N -0.60 -3.78 6.07 -10.65 -0.06 -3.84 16 26 H 0.41 1.34 8.96 -40.82 -0.37 0.98 16 27 C 0.05 0.29 11.81 -16.73 -0.20 0.09 16 28 C -0.20 -1.66 11.08 -37.67 -0.42 -2.08 16 29 C -0.11 -1.07 6.37 -105.14 -0.67 -1.74 16 30 C -0.07 -0.63 9.67 -39.65 -0.38 -1.01 16 31 C -0.14 -2.10 7.44 -25.83 -0.19 -2.30 16 32 H 0.25 7.89 6.78 -40.82 -0.28 7.62 16 33 H 0.37 9.61 6.50 -40.82 -0.27 9.35 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.02 0.43 7.87 -51.93 -0.41 0.02 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 38 H 0.40 3.64 8.70 -40.82 -0.36 3.29 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.74 8.04 -51.93 -0.42 0.33 16 42 H 0.08 0.81 8.03 -51.93 -0.42 0.39 16 43 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.17 0.44 8.06 -52.48 -0.42 0.01 16 46 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 48 H 0.09 1.41 7.92 -51.93 -0.41 1.00 16 49 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 406.32 15.07 6.12 6.12 Total: -1.00 -36.77 406.32 -11.62 -48.39 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -7.58 Total: 10.61 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -5.24 Total: -17.52 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.08 Total: -60.56 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 26.50 SS G_CDS: -5.09 Total: 21.42 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.77 -11.62 -48.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506891630.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.714 kcal (2) G-P(sol) polarization free energy of solvation -36.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds