Wall clock time and date at job start Sat Apr 11 2020 06:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 119.99881 * 2 1 4 4 H 1.48506 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00145 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00138 * 3 2 1 7 7 C 1.38809 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99940 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99795 * 180.02562 * 9 7 2 11 11 C 1.53012 * 109.46866 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.84661 * 45.33137 * 11 10 9 13 13 C 1.53776 * 113.61120 * 176.52859 * 11 10 9 14 14 C 1.53776 * 87.08140 * 139.98110 * 13 11 10 15 15 H 1.09003 * 113.61603 * 220.01858 * 14 13 11 16 16 N 1.46499 * 113.61864 * 89.11343 * 14 13 11 17 17 C 1.34771 * 120.00526 * 155.00336 * 16 14 13 18 18 O 1.21283 * 119.99706 * 359.97438 * 17 16 14 19 19 C 1.50705 * 120.00364 * 180.02562 * 17 16 14 20 20 C 1.52994 * 109.47137 * 179.97438 * 19 17 16 21 21 C 1.50705 * 109.47137 * 179.97438 * 20 19 17 22 22 C 1.38828 * 119.73367 * 89.99706 * 21 20 19 23 23 C 1.37750 * 120.66297 * 179.97438 * 22 21 20 24 24 C 1.39124 * 119.77671 * 0.02562 * 23 22 21 25 25 N 1.37692 * 133.50017 * 179.97438 * 24 23 22 26 26 H 0.96996 * 125.06622 * 0.02562 * 25 24 23 27 27 C 1.36827 * 109.86931 * 180.02562 * 25 24 23 28 28 C 1.34235 * 109.93440 * 0.02562 * 27 25 24 29 29 C 1.40669 * 119.33918 * 0.02562 * 24 23 22 30 30 C 1.36622 * 119.73247 * 269.72679 * 21 20 19 31 31 C 1.53780 * 113.61066 * 274.13381 * 11 10 9 32 32 H 0.97004 * 120.00335 * 180.02562 * 1 2 3 33 33 H 0.96997 * 120.00183 * 359.97438 * 9 7 2 34 34 H 1.08994 * 109.47375 * 299.99261 * 10 9 7 35 35 H 1.08995 * 109.47778 * 59.99907 * 10 9 7 36 36 H 1.09006 * 113.61201 * 254.52524 * 13 11 10 37 37 H 1.09000 * 113.61830 * 25.34704 * 13 11 10 38 38 H 0.97009 * 120.00063 * 335.00210 * 16 14 13 39 39 H 1.08997 * 109.46911 * 300.00111 * 19 17 16 40 40 H 1.09004 * 109.46754 * 59.99763 * 19 17 16 41 41 H 1.09006 * 109.46943 * 299.99531 * 20 19 17 42 42 H 1.08992 * 109.47367 * 59.99910 * 20 19 17 43 43 H 1.08000 * 119.67506 * 0.02562 * 22 21 20 44 44 H 1.08000 * 120.10869 * 180.02562 * 23 22 21 45 45 H 1.08007 * 125.03148 * 179.97438 * 27 25 24 46 46 H 1.07998 * 126.50525 * 179.97438 * 28 27 25 47 47 H 1.08000 * 120.11745 * 359.97438 * 30 21 20 48 48 H 1.08997 * 113.61404 * 334.56614 * 31 11 10 49 49 H 1.08997 * 113.61422 * 105.47538 * 31 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 1.2125 6 1 1.8914 2.3965 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 6 1.0638 -4.8197 -0.0022 12 1 0.2523 -4.6824 -0.7169 13 6 1.7326 -6.2018 -0.0876 14 6 0.6859 -6.6841 0.9305 15 1 1.0891 -7.3607 1.6840 16 7 -0.5450 -7.1853 0.3141 17 6 -1.3155 -8.0733 0.9730 18 8 -0.9896 -8.4578 2.0762 19 6 -2.5814 -8.5893 0.3387 20 6 -3.2620 -9.5767 1.2887 21 6 -4.5283 -10.0923 0.6547 22 6 -4.4880 -11.2342 -0.1338 23 6 -5.6338 -11.7225 -0.7221 24 6 -6.8447 -11.0662 -0.5261 25 7 -8.1294 -11.2963 -0.9649 26 1 -8.3997 -12.0318 -1.5364 27 6 -8.9679 -10.3326 -0.4744 28 6 -8.2759 -9.4646 0.2802 29 6 -6.8800 -9.9089 0.2728 30 6 -5.7075 -9.4352 0.8649 31 6 0.5858 -5.2222 1.4029 32 1 -0.4851 -0.8401 0.0004 33 1 0.3556 -2.3881 -0.0016 34 1 2.6853 -3.7141 -0.8911 35 1 2.6841 -3.7149 0.8888 36 1 1.6389 -6.6725 -1.0663 37 1 2.7537 -6.2171 0.2934 38 1 -0.8055 -6.8781 -0.5684 39 1 -3.2536 -7.7551 0.1384 40 1 -2.3394 -9.0937 -0.5968 41 1 -2.5895 -10.4110 1.4886 42 1 -3.5038 -9.0728 2.2244 43 1 -3.5490 -11.7455 -0.2868 44 1 -5.5923 -12.6119 -1.3334 45 1 -10.0294 -10.2780 -0.6668 46 1 -8.6728 -8.6022 0.7950 47 1 -5.7320 -8.5502 1.4834 48 1 1.2923 -4.9695 2.1934 49 1 -0.4323 -4.9032 1.6257 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506891630.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:52 Heat of formation + Delta-G solvation = 17.181063 kcal Electronic energy + Delta-G solvation = -27469.918331 eV Core-core repulsion = 23589.584108 eV Total energy + Delta-G solvation = -3880.334223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.08071 -41.30498 -39.66312 -38.34495 -36.67714 -34.53501 -34.09848 -32.78520 -32.60453 -29.88837 -29.60299 -28.21818 -26.69262 -25.78889 -24.98909 -23.53982 -23.08117 -22.09012 -21.60842 -21.01356 -20.30663 -19.28978 -18.93074 -18.23659 -17.15135 -17.02156 -16.75773 -16.56273 -16.06961 -15.80871 -15.66194 -15.35395 -15.24237 -15.07600 -14.81039 -14.72816 -14.60625 -14.10127 -13.85388 -13.80196 -13.47865 -13.40908 -13.38219 -13.01337 -12.66978 -12.59024 -12.38732 -12.12663 -12.05029 -11.92566 -11.86083 -11.65583 -11.63516 -11.35069 -11.07205 -10.92249 -10.86396 -10.65554 -10.04141 -9.10321 -9.03978 -8.60628 -8.41773 -5.34704 0.23326 0.64889 1.57555 1.62375 1.69411 1.81342 1.85358 2.17071 2.31910 2.70454 2.94589 3.37754 3.49753 3.54483 3.67428 3.81143 3.85475 3.88748 4.01961 4.10720 4.14351 4.20732 4.27097 4.35028 4.48233 4.49010 4.57005 4.66810 4.71136 4.73604 4.78485 4.83205 4.88506 4.91160 4.94471 4.99661 5.07677 5.09370 5.20052 5.22012 5.23076 5.31774 5.50278 5.57251 5.65451 5.78284 5.84065 5.85213 6.25307 6.48404 6.55484 6.75714 7.09431 7.25532 8.00444 8.11155 9.10661 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.001657 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.293398 B =16898.285203 C =18369.708873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.107 4.107 3 Si 1.134 2.866 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.336 4.336 8 H 0.066 0.934 9 N -0.757 5.757 10 C 0.165 3.835 11 C -0.112 4.112 12 H 0.086 0.914 13 C -0.116 4.116 14 C 0.127 3.873 15 H 0.094 0.906 16 N -0.704 5.704 17 C 0.513 3.487 18 O -0.584 6.584 19 C -0.125 4.125 20 C -0.053 4.053 21 C -0.110 4.110 22 C -0.101 4.101 23 C -0.129 4.129 24 C 0.071 3.929 25 N -0.590 5.590 26 H 0.429 0.571 27 C 0.064 3.936 28 C -0.240 4.240 29 C -0.135 4.135 30 C -0.086 4.086 31 C -0.145 4.145 32 H 0.244 0.756 33 H 0.360 0.640 34 H 0.020 0.980 35 H 0.017 0.983 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.414 0.586 39 H 0.104 0.896 40 H 0.120 0.880 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.207 0.793 46 H 0.151 0.849 47 H 0.119 0.881 48 H 0.081 0.919 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.961 -29.662 -4.781 33.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.298 4.298 3 Si 0.958 3.042 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.468 4.468 8 H 0.084 0.916 9 N -0.401 5.401 10 C 0.038 3.962 11 C -0.131 4.131 12 H 0.105 0.895 13 C -0.154 4.154 14 C 0.021 3.979 15 H 0.112 0.888 16 N -0.355 5.355 17 C 0.301 3.699 18 O -0.464 6.464 19 C -0.165 4.165 20 C -0.091 4.091 21 C -0.111 4.111 22 C -0.120 4.120 23 C -0.149 4.149 24 C -0.036 4.036 25 N -0.194 5.194 26 H 0.269 0.731 27 C -0.063 4.063 28 C -0.265 4.265 29 C -0.140 4.140 30 C -0.105 4.105 31 C -0.183 4.183 32 H 0.054 0.946 33 H 0.192 0.808 34 H 0.038 0.962 35 H 0.035 0.965 36 H 0.112 0.888 37 H 0.122 0.878 38 H 0.251 0.749 39 H 0.123 0.877 40 H 0.138 0.862 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.161 0.839 44 H 0.160 0.840 45 H 0.224 0.776 46 H 0.169 0.831 47 H 0.137 0.863 48 H 0.099 0.901 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.676 -28.421 -4.090 32.246 hybrid contribution -0.508 -1.315 -0.291 1.439 sum -15.184 -29.735 -4.382 33.674 Atomic orbital electron populations 1.70931 1.07155 1.27903 1.56410 1.27262 0.97172 1.04773 1.00558 0.82541 0.73702 0.71328 0.76584 1.19637 1.21808 1.21555 1.20489 0.92403 0.87319 1.46583 0.91648 1.42592 1.04786 1.02105 1.90623 1.20766 0.93764 0.84288 0.97336 1.22697 0.98424 0.94399 0.97537 0.89526 1.23203 0.98733 0.93305 1.00148 1.21743 0.85673 0.93874 0.96582 0.88837 1.45700 1.23656 1.44501 1.21651 1.21298 0.85633 0.77742 0.85179 1.90685 1.73814 1.60005 1.21919 1.21672 0.92936 1.01033 1.00851 1.20149 0.93297 0.98515 0.97092 1.19346 0.94302 0.96981 1.00486 1.20964 0.98385 0.95823 0.96832 1.20296 0.89441 1.01507 1.03676 1.18540 0.87063 0.97833 1.00165 1.41869 1.05231 1.26935 1.45407 0.73136 1.22401 0.97503 0.89251 0.97105 1.22013 0.91471 1.04366 1.08666 1.19583 0.94889 0.97547 1.01973 1.20305 0.90978 0.99753 0.99468 1.23448 1.01021 0.96590 0.97289 0.94554 0.80842 0.96195 0.96461 0.88776 0.87796 0.74924 0.87727 0.86209 0.90600 0.92022 0.83873 0.83968 0.77620 0.83111 0.86322 0.90066 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.29 13.70 21.65 0.30 -61.99 16 2 C -0.11 -6.34 5.50 84.86 0.47 -5.88 16 3 Si 1.13 53.06 29.92 68.60 2.05 55.11 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 7 C -0.34 -19.54 9.99 84.03 0.84 -18.70 16 8 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 9 N -0.76 -39.31 5.60 -343.44 -1.92 -41.24 16 10 C 0.16 6.64 6.08 86.38 0.53 7.16 16 11 C -0.11 -3.38 3.62 -10.27 -0.04 -3.42 16 12 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 13 C -0.12 -2.55 7.39 31.12 0.23 -2.32 16 14 C 0.13 3.10 4.33 45.58 0.20 3.30 16 15 H 0.09 2.47 7.47 -2.39 -0.02 2.45 16 16 N -0.70 -14.72 5.26 -439.76 -2.31 -17.04 16 17 C 0.51 11.90 7.83 87.66 0.69 12.58 16 18 O -0.58 -18.52 15.58 -3.04 -0.05 -18.57 16 19 C -0.13 -2.03 5.68 29.85 0.17 -1.86 16 20 C -0.05 -0.97 4.62 29.85 0.14 -0.83 16 21 C -0.11 -1.98 5.10 -20.10 -0.10 -2.08 16 22 C -0.10 -1.53 9.66 22.30 0.22 -1.31 16 23 C -0.13 -1.84 10.08 22.37 0.23 -1.62 16 24 C 0.07 1.19 7.28 39.03 0.28 1.47 16 25 N -0.59 -6.31 6.07 -187.61 -1.14 -7.45 16 26 H 0.43 1.72 8.96 -92.71 -0.83 0.88 16 27 C 0.06 0.66 11.81 83.00 0.98 1.64 16 28 C -0.24 -3.88 11.08 23.51 0.26 -3.62 16 29 C -0.14 -2.70 6.37 -20.20 -0.13 -2.83 16 30 C -0.09 -1.74 9.67 22.23 0.21 -1.53 16 31 C -0.14 -4.38 7.44 31.18 0.23 -4.15 16 32 H 0.24 15.52 6.78 -92.70 -0.63 14.89 16 33 H 0.36 19.33 6.50 -92.71 -0.60 18.73 16 34 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.02 0.72 7.87 -2.39 -0.02 0.70 16 36 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.10 2.16 8.10 -2.39 -0.02 2.14 16 38 H 0.41 6.63 8.70 -92.70 -0.81 5.82 16 39 H 0.10 1.55 8.14 -2.39 -0.02 1.54 16 40 H 0.12 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.08 1.43 8.04 -2.38 -0.02 1.41 16 42 H 0.06 1.34 8.03 -2.39 -0.02 1.32 16 43 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 44 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 45 H 0.21 0.40 8.06 -2.91 -0.02 0.38 16 46 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 47 H 0.12 2.30 8.06 -2.91 -0.02 2.28 16 48 H 0.08 2.59 7.92 -2.39 -0.02 2.57 16 49 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -80.75 406.32 1.21 -79.54 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: -1.12 Total: 35.61 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 5.40 Total: -23.98 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -5.08 Total: -127.71 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.05 Total: -18.57 kcal Atomic # 14 Polarization: 53.06 SS G_CDS: 2.05 Total: 55.11 kcal Total: -80.75 1.21 -79.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506891630.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.722 kcal (2) G-P(sol) polarization free energy of solvation -80.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds