Wall clock time and date at job start Sat Apr 11 2020 06:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99908 * 2 1 4 4 H 1.48493 * 109.47214 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47132 * 300.00446 * 3 2 1 6 6 H 1.48502 * 109.46677 * 60.00153 * 3 2 1 7 7 C 1.38806 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00535 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99532 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99389 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46586 * 180.02562 * 10 9 7 12 12 H 1.09001 * 112.85252 * 316.19452 * 11 10 9 13 13 C 1.53782 * 113.61697 * 87.50293 * 11 10 9 14 14 C 1.53784 * 87.08158 * 139.97902 * 13 11 10 15 15 H 1.08999 * 113.69250 * 220.00726 * 14 13 11 16 16 N 1.46501 * 113.61262 * 89.11441 * 14 13 11 17 17 C 1.34783 * 119.99633 * 107.50613 * 16 14 13 18 18 O 1.21551 * 120.00105 * 359.97438 * 17 16 14 19 19 C 1.47860 * 119.99858 * 180.02562 * 17 16 14 20 20 C 1.39622 * 120.10643 * 359.97438 * 19 17 16 21 21 C 1.37983 * 120.00004 * 180.02562 * 20 19 17 22 22 C 1.38247 * 120.22873 * 0.22855 * 21 20 19 23 23 C 1.38979 * 120.21918 * 359.49564 * 22 21 20 24 24 N 1.39716 * 120.00300 * 180.23202 * 23 22 21 25 25 C 1.48229 * 110.99761 * 120.16900 * 24 23 22 26 26 C 1.51119 * 105.35808 * 144.89916 * 25 24 23 27 27 C 1.30960 * 109.46106 * 343.02375 * 26 25 24 28 28 C 1.48227 * 110.99635 * 233.80850 * 24 23 22 29 29 C 1.38680 * 119.99096 * 0.52530 * 23 22 21 30 30 C 1.53781 * 87.08133 * 334.56675 * 14 13 11 31 31 H 0.97006 * 119.99945 * 359.97438 * 1 2 3 32 32 H 0.96996 * 120.00290 * 0.02562 * 9 7 2 33 33 H 1.08995 * 109.47403 * 60.00122 * 10 9 7 34 34 H 1.08998 * 109.47330 * 299.99826 * 10 9 7 35 35 H 1.08997 * 113.61405 * 25.43066 * 13 11 10 36 36 H 1.09000 * 113.61380 * 254.52721 * 13 11 10 37 37 H 0.96994 * 120.00422 * 287.50341 * 16 14 13 38 38 H 1.07996 * 119.99952 * 0.02562 * 20 19 17 39 39 H 1.07996 * 119.88455 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.88969 * 179.74234 * 22 21 20 41 41 H 1.08996 * 110.26342 * 263.86803 * 25 24 23 42 42 H 1.09000 * 110.26666 * 25.92972 * 25 24 23 43 43 H 1.08002 * 125.27417 * 163.00364 * 26 25 24 44 44 H 1.07995 * 125.27759 * 180.02562 * 27 26 25 45 45 H 1.09001 * 110.26923 * 334.07013 * 28 24 23 46 46 H 1.08997 * 110.27138 * 96.13328 * 28 24 23 47 47 H 1.08004 * 120.10917 * 179.70476 * 29 23 22 48 48 H 1.09002 * 113.61107 * 139.98212 * 30 14 13 49 49 H 1.08997 * 113.61768 * 270.88492 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0639 -4.8196 -0.0012 12 1 0.2376 -4.6705 0.6938 13 6 0.6174 -5.2477 -1.4091 14 6 0.7053 -6.6996 -0.9100 15 1 1.1237 -7.3900 -1.6424 16 7 -0.5383 -7.1906 -0.3112 17 6 -1.2949 -8.0898 -0.9711 18 8 -0.9457 -8.4931 -2.0633 19 6 -2.5504 -8.5849 -0.3670 20 6 -2.9540 -8.1227 0.8872 21 6 -4.1257 -8.5866 1.4492 22 6 -4.9013 -9.5126 0.7766 23 6 -4.5114 -9.9746 -0.4748 24 7 -5.3011 -10.9068 -1.1526 25 6 -5.7562 -10.3690 -2.4568 26 6 -5.7756 -11.5545 -3.3937 27 6 -5.0672 -12.5286 -2.8796 28 6 -4.5032 -12.0919 -1.5472 29 6 -3.3352 -9.5149 -1.0479 30 6 1.7305 -6.2001 0.1216 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 2.6848 -3.7144 0.8894 34 1 2.6848 -3.7144 -0.8905 35 1 1.3415 -5.0092 -2.1881 36 1 -0.3954 -4.9330 -1.6606 37 1 -0.8172 -6.8685 0.5602 38 1 -2.3490 -7.4022 1.4175 39 1 -4.4359 -8.2282 2.4196 40 1 -5.8153 -9.8751 1.2234 41 1 -6.7562 -9.9459 -2.3624 42 1 -5.0583 -9.6137 -2.8180 43 1 -6.2937 -11.5927 -4.3406 44 1 -4.9101 -13.4942 -3.3369 45 1 -3.4524 -11.8218 -1.6523 46 1 -4.6176 -12.8867 -0.8101 47 1 -3.0280 -9.8763 -2.0182 48 1 1.6162 -6.6542 1.1059 49 1 2.7589 -6.2219 -0.2389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506900037.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:56 Heat of formation + Delta-G solvation = 68.314547 kcal Electronic energy + Delta-G solvation = -28256.587459 eV Core-core repulsion = 24378.470550 eV Total energy + Delta-G solvation = -3878.116909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.10573 -40.19291 -38.72084 -37.71360 -34.59606 -33.66078 -32.86892 -31.49971 -30.77088 -28.93426 -28.83515 -26.89437 -25.52355 -24.54526 -23.79926 -23.15940 -21.52697 -21.46451 -20.61137 -19.81492 -19.15036 -18.36611 -17.08320 -16.72961 -16.58220 -16.15163 -15.78012 -15.11135 -14.96585 -14.88667 -14.58267 -14.30652 -14.13178 -14.01321 -13.70444 -13.39203 -13.30511 -13.22741 -12.80352 -12.69131 -12.40973 -12.28197 -12.24492 -12.14116 -11.74568 -11.70711 -11.63876 -11.04364 -10.84895 -10.51252 -10.34669 -10.26525 -10.08953 -9.98338 -9.83466 -9.61791 -9.36929 -9.15128 -9.00247 -8.84949 -8.81852 -6.90081 -5.76017 -3.04187 0.52357 0.84843 1.73123 2.60869 2.95385 3.40043 3.43308 3.48689 3.48940 3.51204 4.21242 4.38599 4.39770 4.50169 4.57713 4.64068 4.69208 4.80564 4.84790 4.91291 5.05232 5.08531 5.09456 5.11701 5.12590 5.20681 5.24060 5.44459 5.50653 5.58355 5.69321 5.82816 5.88795 5.91684 5.92032 5.93706 5.96570 5.99441 6.00601 6.09750 6.22154 6.27846 6.32390 6.37740 6.41340 6.61093 6.77996 6.87873 6.92631 7.37213 7.70997 8.05765 8.43212 9.54277 10.13401 10.47762 11.46994 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018672 B = 0.001846 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.189580 B =15164.914412 C =15516.606698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.113 4.113 12 H 0.087 0.913 13 C -0.138 4.138 14 C 0.115 3.885 15 H 0.100 0.900 16 N -0.702 5.702 17 C 0.560 3.440 18 O -0.539 6.539 19 C -0.122 4.122 20 C -0.086 4.086 21 C -0.118 4.118 22 C -0.067 4.067 23 C 0.064 3.936 24 N -0.467 5.467 25 C 0.052 3.948 26 C -0.166 4.166 27 C -0.168 4.168 28 C 0.051 3.949 29 C -0.091 4.091 30 C -0.138 4.138 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.018 0.982 34 H 0.020 0.980 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.401 0.599 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.134 0.866 48 H 0.069 0.931 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.047 -26.964 0.136 29.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.132 4.132 12 H 0.105 0.895 13 C -0.177 4.177 14 C 0.010 3.990 15 H 0.118 0.882 16 N -0.353 5.353 17 C 0.347 3.653 18 O -0.417 6.417 19 C -0.125 4.125 20 C -0.104 4.104 21 C -0.136 4.136 22 C -0.086 4.086 23 C -0.030 4.030 24 N -0.188 5.188 25 C -0.074 4.074 26 C -0.184 4.184 27 C -0.187 4.187 28 C -0.075 4.075 29 C -0.111 4.111 30 C -0.176 4.176 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.237 0.763 38 H 0.148 0.852 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.110 0.890 42 H 0.085 0.915 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.085 0.915 46 H 0.109 0.891 47 H 0.152 0.848 48 H 0.088 0.912 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.085 -27.259 -0.276 29.428 hybrid contribution 0.639 1.446 -0.116 1.585 sum -10.446 -25.813 -0.392 27.849 Atomic orbital electron populations 1.69671 1.05101 1.25470 1.58030 1.24745 0.95541 0.97707 1.03186 0.86118 0.78782 0.84150 0.77168 1.20568 1.21897 1.21893 1.19294 0.91068 0.84258 1.42297 0.91168 1.42356 1.05835 1.00004 1.89394 1.20640 0.92999 0.85201 0.97702 1.22764 0.99106 0.94255 0.97069 0.89457 1.23417 1.02562 0.93967 0.97748 1.21982 0.84216 0.96112 0.96714 0.88173 1.45599 1.23629 1.43650 1.22410 1.18250 0.83411 0.78778 0.84882 1.90766 1.72085 1.58494 1.20316 1.19836 0.96272 1.00399 0.96038 1.21413 0.96646 0.98389 0.93998 1.21104 0.94566 0.97398 1.00574 1.21185 0.99496 0.95157 0.92795 1.18953 0.92529 0.96305 0.95201 1.63342 1.32494 1.04769 1.18188 1.22251 1.02167 0.96361 0.86594 1.23576 1.00102 0.94970 0.99802 1.23561 0.98860 0.99674 0.96578 1.22268 0.96433 0.93278 0.95526 1.21740 0.93892 0.95441 1.00071 1.23321 0.98915 0.96562 0.98829 0.93615 0.78349 0.96375 0.96188 0.89012 0.91282 0.76303 0.85203 0.84654 0.84723 0.89002 0.91525 0.84337 0.84370 0.91495 0.89094 0.84779 0.91229 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.57 5.60 -59.91 -0.34 -18.90 16 10 C 0.16 3.20 6.10 -4.04 -0.02 3.18 16 11 C -0.11 -1.73 3.63 -89.80 -0.33 -2.05 16 12 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 13 C -0.14 -2.07 7.43 -25.92 -0.19 -2.26 16 14 C 0.11 1.46 4.32 -67.12 -0.29 1.17 16 15 H 0.10 1.35 7.46 -51.93 -0.39 0.96 16 16 N -0.70 -8.22 5.21 -53.95 -0.28 -8.50 16 17 C 0.56 7.44 7.77 -12.32 -0.10 7.35 16 18 O -0.54 -8.98 15.94 5.32 0.08 -8.89 16 19 C -0.12 -1.35 5.87 -104.99 -0.62 -1.96 16 20 C -0.09 -0.75 9.54 -39.16 -0.37 -1.12 16 21 C -0.12 -0.89 10.02 -39.67 -0.40 -1.29 16 22 C -0.07 -0.55 9.96 -39.30 -0.39 -0.94 16 23 C 0.06 0.61 4.91 -83.83 -0.41 0.20 16 24 N -0.47 -4.19 5.58 -171.19 -0.96 -5.14 16 25 C 0.05 0.43 6.47 -4.04 -0.03 0.41 16 26 C -0.17 -1.18 10.94 -35.81 -0.39 -1.57 16 27 C -0.17 -1.17 10.95 -35.80 -0.39 -1.56 16 28 C 0.05 0.41 6.44 -4.03 -0.03 0.38 16 29 C -0.09 -0.98 7.23 -38.97 -0.28 -1.26 16 30 C -0.14 -1.64 7.39 -25.92 -0.19 -1.83 16 31 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.38 10.21 7.67 -40.82 -0.31 9.90 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.02 0.40 7.84 -51.93 -0.41 0.00 16 35 H 0.09 1.39 7.89 -51.93 -0.41 0.98 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.40 3.82 6.73 -40.82 -0.27 3.54 16 38 H 0.13 0.89 6.40 -52.49 -0.34 0.55 16 39 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.61 6.75 -51.93 -0.35 0.26 16 43 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.07 0.58 6.30 -51.93 -0.33 0.25 16 46 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.13 1.57 6.62 -52.48 -0.35 1.22 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 399.72 15.07 6.02 6.02 Total: -1.00 -33.85 399.72 -11.79 -45.64 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -7.35 Total: 10.55 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -4.68 Total: -10.60 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.85 Total: -60.25 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.08 Total: -8.89 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.85 -11.79 -45.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506900037.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.952 kcal (2) G-P(sol) polarization free energy of solvation -33.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds