Wall clock time and date at job start Sat Apr 11 2020 06:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99908 * 2 1 4 4 H 1.48493 * 109.47214 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47132 * 300.00446 * 3 2 1 6 6 H 1.48502 * 109.46677 * 60.00153 * 3 2 1 7 7 C 1.38806 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00535 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99532 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99389 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46586 * 180.02562 * 10 9 7 12 12 H 1.09001 * 112.85252 * 316.19452 * 11 10 9 13 13 C 1.53782 * 113.61697 * 87.50293 * 11 10 9 14 14 C 1.53784 * 87.08158 * 139.97902 * 13 11 10 15 15 H 1.08999 * 113.69250 * 220.00726 * 14 13 11 16 16 N 1.46501 * 113.61262 * 89.11441 * 14 13 11 17 17 C 1.34783 * 119.99633 * 107.50613 * 16 14 13 18 18 O 1.21551 * 120.00105 * 359.97438 * 17 16 14 19 19 C 1.47860 * 119.99858 * 180.02562 * 17 16 14 20 20 C 1.39622 * 120.10643 * 359.97438 * 19 17 16 21 21 C 1.37983 * 120.00004 * 180.02562 * 20 19 17 22 22 C 1.38247 * 120.22873 * 0.22855 * 21 20 19 23 23 C 1.38979 * 120.21918 * 359.49564 * 22 21 20 24 24 N 1.39716 * 120.00300 * 180.23202 * 23 22 21 25 25 C 1.48229 * 110.99761 * 120.16900 * 24 23 22 26 26 C 1.51119 * 105.35808 * 144.89916 * 25 24 23 27 27 C 1.30960 * 109.46106 * 343.02375 * 26 25 24 28 28 C 1.48227 * 110.99635 * 233.80850 * 24 23 22 29 29 C 1.38680 * 119.99096 * 0.52530 * 23 22 21 30 30 C 1.53781 * 87.08133 * 334.56675 * 14 13 11 31 31 H 0.97006 * 119.99945 * 359.97438 * 1 2 3 32 32 H 0.96996 * 120.00290 * 0.02562 * 9 7 2 33 33 H 1.08995 * 109.47403 * 60.00122 * 10 9 7 34 34 H 1.08998 * 109.47330 * 299.99826 * 10 9 7 35 35 H 1.08997 * 113.61405 * 25.43066 * 13 11 10 36 36 H 1.09000 * 113.61380 * 254.52721 * 13 11 10 37 37 H 0.96994 * 120.00422 * 287.50341 * 16 14 13 38 38 H 1.07996 * 119.99952 * 0.02562 * 20 19 17 39 39 H 1.07996 * 119.88455 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.88969 * 179.74234 * 22 21 20 41 41 H 1.08996 * 110.26342 * 263.86803 * 25 24 23 42 42 H 1.09000 * 110.26666 * 25.92972 * 25 24 23 43 43 H 1.08002 * 125.27417 * 163.00364 * 26 25 24 44 44 H 1.07995 * 125.27759 * 180.02562 * 27 26 25 45 45 H 1.09001 * 110.26923 * 334.07013 * 28 24 23 46 46 H 1.08997 * 110.27138 * 96.13328 * 28 24 23 47 47 H 1.08004 * 120.10917 * 179.70476 * 29 23 22 48 48 H 1.09002 * 113.61107 * 139.98212 * 30 14 13 49 49 H 1.08997 * 113.61768 * 270.88492 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0639 -4.8196 -0.0012 12 1 0.2376 -4.6705 0.6938 13 6 0.6174 -5.2477 -1.4091 14 6 0.7053 -6.6996 -0.9100 15 1 1.1237 -7.3900 -1.6424 16 7 -0.5383 -7.1906 -0.3112 17 6 -1.2949 -8.0898 -0.9711 18 8 -0.9457 -8.4931 -2.0633 19 6 -2.5504 -8.5849 -0.3670 20 6 -2.9540 -8.1227 0.8872 21 6 -4.1257 -8.5866 1.4492 22 6 -4.9013 -9.5126 0.7766 23 6 -4.5114 -9.9746 -0.4748 24 7 -5.3011 -10.9068 -1.1526 25 6 -5.7562 -10.3690 -2.4568 26 6 -5.7756 -11.5545 -3.3937 27 6 -5.0672 -12.5286 -2.8796 28 6 -4.5032 -12.0919 -1.5472 29 6 -3.3352 -9.5149 -1.0479 30 6 1.7305 -6.2001 0.1216 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 2.6848 -3.7144 0.8894 34 1 2.6848 -3.7144 -0.8905 35 1 1.3415 -5.0092 -2.1881 36 1 -0.3954 -4.9330 -1.6606 37 1 -0.8172 -6.8685 0.5602 38 1 -2.3490 -7.4022 1.4175 39 1 -4.4359 -8.2282 2.4196 40 1 -5.8153 -9.8751 1.2234 41 1 -6.7562 -9.9459 -2.3624 42 1 -5.0583 -9.6137 -2.8180 43 1 -6.2937 -11.5927 -4.3406 44 1 -4.9101 -13.4942 -3.3369 45 1 -3.4524 -11.8218 -1.6523 46 1 -4.6176 -12.8867 -0.8101 47 1 -3.0280 -9.8763 -2.0182 48 1 1.6162 -6.6542 1.1059 49 1 2.7589 -6.2219 -0.2389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506900037.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:55 Heat of formation + Delta-G solvation = 46.523204 kcal Electronic energy + Delta-G solvation = -28257.532402 eV Core-core repulsion = 24378.470550 eV Total energy + Delta-G solvation = -3879.061852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.88711 -41.14235 -39.71881 -38.58304 -36.36413 -34.76512 -33.77231 -32.83469 -32.10014 -29.64559 -29.45618 -28.50218 -26.65354 -25.76405 -24.72671 -24.46324 -22.93463 -22.24149 -21.50004 -20.38031 -20.36679 -19.18537 -19.06979 -17.56017 -17.37317 -16.95457 -16.81033 -16.54536 -16.18678 -15.86795 -15.70332 -15.51020 -15.15502 -15.06303 -14.80945 -14.76670 -14.49358 -13.98921 -13.91986 -13.71926 -13.42065 -13.25816 -13.14853 -12.99671 -12.92242 -12.89800 -12.72446 -12.39173 -12.29853 -12.13054 -11.94002 -11.76475 -11.38393 -11.24250 -11.16743 -10.87550 -10.69351 -10.25102 -9.97924 -9.79896 -9.47054 -8.97793 -7.95480 -5.23587 -0.25357 0.14893 1.18273 1.46759 1.47572 1.57691 1.70836 1.99077 2.55688 2.69841 2.76534 3.37588 3.51618 3.56064 3.60060 3.61999 3.81438 3.85573 3.90937 3.93266 3.99075 4.14508 4.26601 4.32685 4.40578 4.46285 4.47154 4.54751 4.56595 4.65446 4.71965 4.78897 4.83126 4.86237 4.90921 4.93160 4.97579 5.12446 5.16980 5.25044 5.26574 5.31498 5.33202 5.34234 5.38447 5.49193 5.62392 5.67626 5.83130 6.18310 6.27585 6.42154 7.07113 7.33504 8.11551 8.33725 9.28263 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018672 B = 0.001846 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.189580 B =15164.914412 C =15516.606698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.295 1.295 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.075 0.925 9 N -0.745 5.745 10 C 0.159 3.841 11 C -0.110 4.110 12 H 0.088 0.912 13 C -0.143 4.143 14 C 0.123 3.877 15 H 0.094 0.906 16 N -0.692 5.692 17 C 0.557 3.443 18 O -0.582 6.582 19 C -0.141 4.141 20 C -0.084 4.084 21 C -0.110 4.110 22 C -0.065 4.065 23 C 0.057 3.943 24 N -0.470 5.470 25 C 0.047 3.953 26 C -0.173 4.173 27 C -0.170 4.170 28 C 0.046 3.954 29 C -0.102 4.102 30 C -0.115 4.115 31 H 0.251 0.749 32 H 0.373 0.627 33 H 0.024 0.976 34 H 0.020 0.980 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.414 0.586 38 H 0.151 0.849 39 H 0.168 0.832 40 H 0.153 0.847 41 H 0.098 0.902 42 H 0.051 0.949 43 H 0.158 0.842 44 H 0.160 0.840 45 H 0.054 0.946 46 H 0.100 0.900 47 H 0.114 0.886 48 H 0.094 0.906 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.011 -27.861 1.740 30.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.387 5.387 10 C 0.033 3.967 11 C -0.129 4.129 12 H 0.106 0.894 13 C -0.182 4.182 14 C 0.018 3.982 15 H 0.112 0.888 16 N -0.343 5.343 17 C 0.346 3.654 18 O -0.463 6.463 19 C -0.144 4.144 20 C -0.102 4.102 21 C -0.128 4.128 22 C -0.083 4.083 23 C -0.037 4.037 24 N -0.191 5.191 25 C -0.078 4.078 26 C -0.191 4.191 27 C -0.188 4.188 28 C -0.080 4.080 29 C -0.123 4.123 30 C -0.153 4.153 31 H 0.059 0.941 32 H 0.205 0.795 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.252 0.748 38 H 0.168 0.832 39 H 0.185 0.815 40 H 0.171 0.829 41 H 0.116 0.884 42 H 0.069 0.931 43 H 0.176 0.824 44 H 0.177 0.823 45 H 0.073 0.927 46 H 0.118 0.882 47 H 0.132 0.868 48 H 0.113 0.887 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.017 -28.179 1.358 30.287 hybrid contribution 0.615 1.676 -0.612 1.887 sum -10.402 -26.503 0.746 28.482 Atomic orbital electron populations 1.69823 1.06587 1.25931 1.59737 1.25579 0.96445 1.01146 1.03906 0.85072 0.78254 0.79798 0.76639 1.19014 1.22227 1.21895 1.19704 0.91539 0.85523 1.40821 0.90668 1.42588 1.05599 1.01272 1.89285 1.20835 0.93773 0.84508 0.97581 1.22686 0.98596 0.94330 0.97239 0.89412 1.23428 1.01300 0.95851 0.97632 1.21824 0.84912 0.94467 0.97016 0.88760 1.45513 1.23099 1.43006 1.22700 1.18651 0.83963 0.78423 0.84362 1.90736 1.73222 1.60098 1.22229 1.19762 0.95732 1.01568 0.97382 1.21665 0.97289 0.98319 0.92935 1.21469 0.93534 0.96336 1.01480 1.21491 1.00058 0.94732 0.92062 1.19106 0.92149 0.96566 0.95879 1.63418 1.32385 1.04900 1.18394 1.22298 1.01965 0.96728 0.86856 1.23764 1.00603 0.94335 1.00381 1.23779 0.98429 1.00603 0.96024 1.22335 0.95791 0.93255 0.96604 1.21654 0.94830 0.96157 0.99617 1.23233 0.98893 0.93359 0.99817 0.94067 0.79547 0.95831 0.96235 0.89566 0.93165 0.74823 0.83176 0.81466 0.82888 0.88411 0.93128 0.82448 0.82286 0.92747 0.88212 0.86766 0.88738 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.74 13.06 21.65 0.28 -59.45 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 3 Si 0.97 46.41 29.55 68.60 2.03 48.44 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 7 C -0.24 -13.72 9.99 84.03 0.84 -12.89 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 9 N -0.75 -37.85 5.60 -343.45 -1.92 -39.77 16 10 C 0.16 6.15 6.10 86.38 0.53 6.68 16 11 C -0.11 -3.23 3.63 -10.26 -0.04 -3.26 16 12 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 13 C -0.14 -4.29 7.43 31.12 0.23 -4.05 16 14 C 0.12 3.04 4.32 45.52 0.20 3.23 16 15 H 0.09 2.51 7.46 -2.39 -0.02 2.50 16 16 N -0.69 -15.64 5.21 -442.88 -2.31 -17.95 16 17 C 0.56 15.05 7.77 86.79 0.67 15.72 16 18 O -0.58 -20.29 15.94 -3.87 -0.06 -20.35 16 19 C -0.14 -3.12 5.87 -20.11 -0.12 -3.24 16 20 C -0.08 -1.31 9.54 22.54 0.22 -1.09 16 21 C -0.11 -1.37 10.02 22.21 0.22 -1.14 16 22 C -0.06 -0.94 9.96 22.45 0.22 -0.72 16 23 C 0.06 1.08 4.91 38.17 0.19 1.27 16 24 N -0.47 -8.34 5.58 -695.53 -3.88 -12.22 16 25 C 0.05 0.80 6.47 85.43 0.55 1.35 16 26 C -0.17 -2.37 10.94 25.82 0.28 -2.08 16 27 C -0.17 -2.26 10.95 25.82 0.28 -1.98 16 28 C 0.05 0.74 6.44 85.44 0.55 1.29 16 29 C -0.10 -2.29 7.23 22.67 0.16 -2.13 16 30 C -0.11 -2.45 7.39 31.12 0.23 -2.22 16 31 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 32 H 0.37 20.17 7.67 -92.71 -0.71 19.46 16 33 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.02 0.77 7.84 -2.39 -0.02 0.75 16 35 H 0.09 2.65 7.89 -2.39 -0.02 2.63 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.41 7.12 6.73 -92.71 -0.62 6.50 16 38 H 0.15 1.64 6.40 -2.91 -0.02 1.63 16 39 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 40 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 41 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.05 1.01 6.75 -2.39 -0.02 0.99 16 43 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 44 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 45 H 0.05 1.01 6.30 -2.39 -0.02 0.99 16 46 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.11 2.96 6.62 -2.91 -0.02 2.94 16 48 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.11 2.12 8.10 -2.39 -0.02 2.10 16 Total: -1.00 -74.19 399.72 -0.54 -74.72 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: -0.36 Total: 35.94 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 5.69 Total: -9.36 kcal Atomic # 7 Polarization: -121.56 SS G_CDS: -7.83 Total: -129.39 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.06 Total: -20.35 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -74.19 -0.54 -74.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506900037.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.247 kcal (2) G-P(sol) polarization free energy of solvation -74.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds