Wall clock time and date at job start Sat Apr 11 2020 06:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.50080 * 55.05945 * 11 10 9 13 13 C 1.53039 * 109.49663 * 175.16485 * 11 10 9 14 14 C 1.53032 * 109.53897 * 181.31566 * 13 11 10 15 15 C 1.53193 * 109.31086 * 298.62771 * 14 13 11 16 16 N 1.46934 * 108.77515 * 54.63776 * 15 14 13 17 17 C 1.34771 * 120.63099 * 126.36444 * 16 15 14 18 18 O 1.21287 * 120.00014 * 180.02562 * 17 16 15 19 19 C 1.50699 * 120.00253 * 0.03038 * 17 16 15 20 20 N 1.46495 * 109.47416 * 179.97438 * 19 17 16 21 21 C 1.36834 * 125.06433 * 265.02562 * 20 19 17 22 22 C 1.34229 * 109.93513 * 179.97438 * 21 20 19 23 23 C 1.46491 * 106.99830 * 359.97438 * 22 21 20 24 24 C 1.39627 * 134.03863 * 180.02562 * 23 22 21 25 25 C 1.36631 * 119.76672 * 179.22369 * 24 23 22 26 26 C 1.38829 * 120.52341 * 0.69112 * 25 24 23 27 27 C 1.37751 * 120.67142 * 359.54251 * 26 25 24 28 28 C 1.37688 * 125.06779 * 84.71390 * 20 19 17 29 29 C 1.46927 * 118.73503 * 306.39385 * 16 15 14 30 30 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 32 32 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 33 33 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 34 34 H 1.09001 * 109.45732 * 301.33358 * 13 11 10 35 35 H 1.09000 * 109.46328 * 61.28904 * 13 11 10 36 36 H 1.08999 * 109.49891 * 178.68369 * 14 13 11 37 37 H 1.08995 * 109.52926 * 58.59491 * 14 13 11 38 38 H 1.09001 * 109.59340 * 294.84783 * 15 14 13 39 39 H 1.09005 * 109.58832 * 174.42176 * 15 14 13 40 40 H 1.09006 * 109.46781 * 299.99482 * 19 17 16 41 41 H 1.09004 * 109.47497 * 59.99239 * 19 17 16 42 42 H 1.07999 * 125.03098 * 359.95563 * 21 20 19 43 43 H 1.08005 * 126.50634 * 179.97438 * 22 21 20 44 44 H 1.07998 * 120.11452 * 359.97125 * 24 23 22 45 45 H 1.08000 * 119.73683 * 180.27433 * 25 24 23 46 46 H 1.08005 * 119.66913 * 179.55926 * 26 25 24 47 47 H 1.07994 * 120.11478 * 180.02562 * 27 26 25 48 48 H 1.09003 * 109.58280 * 293.81567 * 29 16 15 49 49 H 1.09003 * 109.70041 * 173.46800 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0636 -4.8197 -0.0202 12 1 0.3802 -4.7092 -0.8621 13 6 1.8243 -6.1414 -0.1487 14 6 0.8288 -7.3030 -0.1886 15 6 0.0297 -7.3304 1.1181 16 7 -0.5882 -6.0130 1.3223 17 6 -1.9142 -5.9021 1.5359 18 8 -2.4123 -4.8088 1.7026 19 6 -2.7781 -7.1364 1.5678 20 7 -4.1701 -6.7521 1.8147 21 6 -4.7735 -6.7298 3.0426 22 6 -6.0493 -6.3318 2.9184 23 6 -6.2821 -6.0778 1.4946 24 6 -7.3851 -5.6511 0.7523 25 6 -7.2725 -5.4931 -0.6001 26 6 -6.0739 -5.7671 -1.2447 27 6 -4.9746 -6.1938 -0.5326 28 6 -5.0643 -6.3537 0.8466 29 6 0.2671 -4.8188 1.2884 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0068 32 1 2.6846 -3.7098 -0.9038 33 1 2.6846 -3.7192 0.8761 34 1 2.4113 -6.1346 -1.0671 35 1 2.4895 -6.2623 0.7062 36 1 1.3700 -8.2421 -0.3036 37 1 0.1475 -7.1703 -1.0289 38 1 0.6973 -7.5538 1.9503 39 1 -0.7472 -8.0925 1.0555 40 1 -2.7080 -7.6538 0.6109 41 1 -2.4375 -7.7980 2.3643 42 1 -4.2942 -6.9937 3.9738 43 1 -6.7681 -6.2199 3.7167 44 1 -8.3204 -5.4352 1.2471 45 1 -8.1247 -5.1587 -1.1732 46 1 -6.0023 -5.6442 -2.3154 47 1 -4.0465 -6.4040 -1.0432 48 1 0.9542 -4.8373 2.1345 49 1 -0.3511 -3.9224 1.3394 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566913173.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:10 Heat of formation + Delta-G solvation = 43.522680 kcal Electronic energy + Delta-G solvation = -29626.017340 eV Core-core repulsion = 25746.825375 eV Total energy + Delta-G solvation = -3879.191965 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.46623 -40.04680 -37.75705 -36.85729 -34.99053 -33.23928 -32.74326 -31.75000 -30.57857 -29.75760 -28.88558 -27.42012 -25.56393 -24.92689 -23.18691 -22.69685 -21.65664 -21.44852 -20.69836 -20.01730 -19.05863 -17.60513 -17.23419 -16.90801 -16.52933 -15.72654 -15.44184 -15.39389 -14.86244 -14.68962 -14.47149 -14.13842 -13.92630 -13.82666 -13.57586 -13.34202 -13.26050 -13.01589 -12.96339 -12.70888 -12.56235 -12.40659 -12.18111 -11.63025 -11.57711 -11.55674 -11.18148 -11.04031 -10.84477 -10.84111 -10.68890 -10.44185 -10.34818 -10.04028 -9.91818 -9.61584 -9.52679 -8.84808 -8.60637 -8.14473 -7.66251 -6.88709 -5.70144 -3.00596 1.16158 1.65347 2.43063 2.52411 2.76709 3.07385 3.47110 3.50955 3.53097 3.96343 4.26406 4.43134 4.53437 4.62174 4.65273 4.71913 4.75244 4.78210 4.89578 5.03255 5.13418 5.14555 5.23744 5.30029 5.43659 5.47852 5.57127 5.62009 5.64380 5.71998 5.76206 5.80543 5.88408 5.93453 6.02932 6.07266 6.07798 6.16974 6.33898 6.49110 6.49776 6.54852 6.63767 6.74095 6.76976 6.78289 6.84754 7.16925 7.22995 7.37760 7.72961 8.13331 8.47102 9.57997 10.15499 10.49555 11.51928 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009912 B = 0.003050 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.070020 B = 9179.586489 C =10880.526349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.107 4.107 12 H 0.073 0.927 13 C -0.112 4.112 14 C -0.134 4.134 15 C 0.105 3.895 16 N -0.610 5.610 17 C 0.487 3.513 18 O -0.507 6.507 19 C 0.094 3.906 20 N -0.469 5.469 21 C 0.059 3.941 22 C -0.203 4.203 23 C -0.108 4.108 24 C -0.073 4.073 25 C -0.148 4.148 26 C -0.100 4.100 27 C -0.123 4.123 28 C 0.110 3.890 29 C 0.121 3.879 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.022 0.978 33 H 0.019 0.981 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.166 0.834 43 H 0.146 0.854 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.114 0.886 48 H 0.066 0.934 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.110 -23.729 2.690 25.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.126 4.126 12 H 0.092 0.908 13 C -0.151 4.151 14 C -0.172 4.172 15 C -0.018 4.018 16 N -0.345 5.345 17 C 0.272 3.728 18 O -0.380 6.380 19 C -0.032 4.032 20 N -0.153 5.153 21 C -0.066 4.066 22 C -0.228 4.228 23 C -0.112 4.112 24 C -0.092 4.092 25 C -0.167 4.167 26 C -0.119 4.119 27 C -0.144 4.144 28 C 0.005 3.995 29 C 0.000 4.000 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.130 0.870 41 H 0.135 0.865 42 H 0.183 0.817 43 H 0.164 0.836 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.132 0.868 48 H 0.085 0.915 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.950 -23.091 2.774 24.578 hybrid contribution 0.498 0.980 -0.017 1.099 sum -7.452 -22.111 2.758 23.495 Atomic orbital electron populations 1.69666 1.05076 1.25818 1.57117 1.24764 0.95477 0.97683 1.02858 0.86284 0.78516 0.83686 0.77777 1.21300 1.21662 1.21281 1.19149 0.90918 0.84182 1.43385 0.91289 1.42406 1.05922 0.99933 1.89526 1.20628 0.92931 0.85180 0.97995 1.21688 0.97969 0.95196 0.97786 0.90831 1.21519 0.97450 0.93652 1.02436 1.21914 0.98705 0.99348 0.97259 1.21782 0.97484 0.84153 0.98413 1.48208 1.06718 1.08288 1.71257 1.20888 0.82592 0.91264 0.78095 1.90858 1.72289 1.27629 1.47221 1.21621 0.80322 0.95983 1.05265 1.43385 1.08101 1.57802 1.05967 1.21729 0.93576 1.03351 0.87895 1.21620 0.96355 1.10302 0.94513 1.19185 0.93424 1.05078 0.93539 1.20234 0.96987 0.98448 0.93529 1.20601 0.97962 1.03677 0.94497 1.20783 0.92445 0.99201 0.99514 1.20003 0.99349 1.04722 0.90294 1.18179 0.89386 1.01359 0.90587 1.21744 0.93208 0.87845 0.97250 0.93380 0.78104 0.96070 0.96287 0.91402 0.91686 0.90723 0.91468 0.90969 0.90461 0.87000 0.86525 0.81715 0.83620 0.86234 0.86198 0.85875 0.86776 0.91539 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.38 13.06 55.49 0.72 -28.65 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 23.02 29.55 -169.99 -5.02 18.00 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.25 -7.05 9.99 -15.06 -0.15 -7.20 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -19.10 5.38 -59.90 -0.32 -19.42 16 10 C 0.16 3.22 5.65 -4.04 -0.02 3.19 16 11 C -0.11 -1.69 2.38 -90.50 -0.22 -1.91 16 12 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 13 C -0.11 -1.27 5.17 -26.69 -0.14 -1.41 16 14 C -0.13 -1.14 6.08 -26.62 -0.16 -1.30 16 15 C 0.10 0.86 6.34 -3.71 -0.02 0.83 16 16 N -0.61 -7.87 2.97 -172.76 -0.51 -8.38 16 17 C 0.49 7.07 7.77 -10.99 -0.09 6.99 16 18 O -0.51 -10.38 15.83 5.55 0.09 -10.30 16 19 C 0.09 0.94 4.83 -5.20 -0.03 0.91 16 20 N -0.47 -5.97 2.27 -115.71 -0.26 -6.23 16 21 C 0.06 0.68 11.27 -16.73 -0.19 0.49 16 22 C -0.20 -2.49 11.08 -37.67 -0.42 -2.90 16 23 C -0.11 -1.52 6.37 -105.14 -0.67 -2.19 16 24 C -0.07 -0.92 10.05 -39.64 -0.40 -1.32 16 25 C -0.15 -1.77 9.97 -39.94 -0.40 -2.17 16 26 C -0.10 -1.25 10.01 -39.54 -0.40 -1.64 16 27 C -0.12 -1.69 10.00 -39.43 -0.39 -2.08 16 28 C 0.11 1.60 6.79 -83.99 -0.57 1.03 16 29 C 0.12 1.99 5.51 -3.71 -0.02 1.97 16 30 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 31 H 0.38 10.80 6.89 -40.82 -0.28 10.51 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.41 5.93 -51.93 -0.31 0.10 16 40 H 0.11 0.87 7.69 -51.93 -0.40 0.47 16 41 H 0.12 0.73 7.92 -51.93 -0.41 0.32 16 42 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 43 H 0.15 1.41 8.06 -52.48 -0.42 0.99 16 44 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 45 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 46 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 47 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 48 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.10 2.20 6.21 -51.93 -0.32 1.88 16 LS Contribution 397.56 15.07 5.99 5.99 Total: -1.00 -37.41 397.56 -11.30 -48.71 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.61 Total: 9.45 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -4.37 Total: -9.16 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: -0.37 Total: -62.69 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.41 -11.30 -48.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566913173.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.230 kcal (2) G-P(sol) polarization free energy of solvation -37.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds