Wall clock time and date at job start Sat Apr 11 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 119.99922 * 2 1 4 4 H 1.48504 * 109.47191 * 239.99697 * 3 2 1 5 5 H 1.48504 * 109.47312 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47299 * 120.00000 * 3 2 1 7 7 C 1.38941 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00221 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00393 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00095 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00209 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99767 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46943 * 180.02562 * 12 10 9 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 12 16 16 C 1.30999 * 119.99767 * 124.99987 * 15 14 13 17 17 C 1.50706 * 119.99914 * 179.97438 * 16 15 14 18 18 N 1.46502 * 109.47067 * 125.00278 * 17 16 15 19 19 C 1.34780 * 119.99864 * 180.02562 * 18 17 16 20 20 O 1.21278 * 120.00036 * 359.97438 * 19 18 17 21 21 C 1.50699 * 119.99845 * 179.97438 * 19 18 17 22 22 F 1.39900 * 109.47125 * 54.99310 * 21 19 18 23 23 C 1.53001 * 109.46837 * 294.99519 * 21 19 18 24 24 C 1.53005 * 109.46796 * 180.02562 * 23 21 19 25 25 C 1.52993 * 109.47084 * 60.00406 * 24 23 21 26 26 C 1.53001 * 109.46973 * 299.99486 * 25 24 23 27 27 C 1.52997 * 109.47201 * 60.00250 * 26 25 24 28 28 H 0.97001 * 119.99428 * 0.02562 * 1 2 3 29 29 H 0.96997 * 119.99192 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.46763 * 60.00720 * 12 10 9 31 31 H 1.08995 * 109.47483 * 300.00377 * 12 10 9 32 32 H 1.00901 * 111.00067 * 303.95401 * 13 12 10 33 33 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 34 34 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 35 35 H 1.08002 * 120.00474 * 304.99890 * 15 14 13 36 36 H 1.08001 * 120.00285 * 359.97438 * 16 15 14 37 37 H 1.09001 * 109.47115 * 245.00468 * 17 16 15 38 38 H 1.08997 * 109.46988 * 5.00168 * 17 16 15 39 39 H 0.97003 * 120.00011 * 359.97438 * 18 17 16 40 40 H 1.08995 * 109.47440 * 300.00060 * 23 21 19 41 41 H 1.09004 * 109.47606 * 60.00362 * 23 21 19 42 42 H 1.08994 * 109.47304 * 299.99432 * 24 23 21 43 43 H 1.09002 * 109.46623 * 180.02562 * 24 23 21 44 44 H 1.09002 * 109.47517 * 180.02562 * 25 24 23 45 45 H 1.08994 * 109.47845 * 59.99358 * 25 24 23 46 46 H 1.09005 * 109.47416 * 300.00298 * 26 25 24 47 47 H 1.09004 * 109.47606 * 180.02562 * 26 25 24 48 48 H 1.08994 * 109.47656 * 179.97438 * 27 26 25 49 49 H 1.09004 * 109.47340 * 60.00026 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2437 -4.8629 0.0011 13 7 2.1983 -5.9795 0.0016 14 6 1.4980 -7.2708 0.0016 15 6 2.5075 -8.3897 0.0027 16 6 2.4624 -9.3116 0.9324 17 6 3.4715 -10.4308 0.9332 18 7 4.1488 -10.4768 2.2315 19 6 5.0989 -11.4041 2.4635 20 8 5.3929 -12.2008 1.5977 21 6 5.7960 -11.4509 3.7988 22 9 4.8440 -11.5577 4.8183 23 6 6.6107 -10.1707 3.9939 24 6 7.3190 -10.2186 5.3493 25 6 8.2532 -11.4293 5.3941 26 6 7.4384 -12.7096 5.1990 27 6 6.7302 -12.6618 3.8437 28 1 -0.4849 0.8401 -0.0004 29 1 0.3534 -2.3905 -0.0002 30 1 0.6168 -4.9208 -0.8887 31 1 0.6174 -4.9204 0.8913 32 1 2.8332 -5.9128 -0.7798 33 1 0.8728 -7.3450 0.8914 34 1 0.8734 -7.3454 -0.8886 35 1 3.2681 -8.4317 -0.7628 36 1 1.7020 -9.2695 1.6982 37 1 2.9633 -11.3785 0.7548 38 1 4.2058 -10.2586 0.1463 39 1 3.9139 -9.8392 2.9239 40 1 7.3524 -10.0874 3.1995 41 1 5.9453 -9.3080 3.9615 42 1 6.5776 -10.3019 6.1439 43 1 7.8991 -9.3063 5.4884 44 1 8.7574 -11.4637 6.3598 45 1 8.9945 -11.3460 4.5995 46 1 6.6969 -12.7931 5.9936 47 1 8.1038 -13.5723 5.2313 48 1 6.1501 -13.5740 3.7044 49 1 7.4716 -12.5783 3.0490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568944745.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:33 Heat of formation + Delta-G solvation = -147.783559 kcal Electronic energy + Delta-G solvation = -28547.568571 eV Core-core repulsion = 24229.311720 eV Total energy + Delta-G solvation = -4318.256851 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -49.04267 -40.97606 -40.15899 -38.43562 -37.75842 -36.43436 -35.83900 -33.98433 -33.24200 -31.92870 -31.78144 -29.64824 -27.64513 -26.03248 -24.68018 -23.82978 -23.39164 -21.79317 -21.28027 -20.77828 -20.50322 -19.87743 -18.90102 -17.91338 -17.59851 -17.17657 -16.96049 -16.51618 -16.34224 -16.09535 -15.98419 -15.89937 -15.61540 -15.29266 -15.12951 -14.90210 -14.61083 -14.46737 -14.31126 -14.07784 -13.66746 -13.52057 -13.32039 -13.25143 -13.21465 -13.07296 -12.93948 -12.86045 -12.71280 -12.43222 -12.12949 -12.12039 -12.06250 -11.75359 -11.52462 -11.50280 -11.10095 -10.93904 -10.45291 -10.35772 -10.11638 -10.01514 -9.28228 -8.46534 -5.95445 0.98761 1.24505 1.40153 1.42309 1.53129 2.05173 2.07431 2.29782 3.00577 3.18059 3.20754 3.34475 3.47907 3.56685 3.59968 3.73783 4.05974 4.07577 4.10712 4.22345 4.29785 4.32484 4.40581 4.43444 4.45552 4.52126 4.55309 4.57270 4.64199 4.65587 4.79917 4.83724 4.93465 4.99418 5.11898 5.13036 5.17786 5.27293 5.28075 5.40774 5.47245 5.63137 5.73780 5.88771 6.09142 6.27379 6.37187 6.60072 6.91355 7.12473 7.56188 8.11454 8.70449 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.014814 B = 0.001627 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.589875 B =17209.784764 C =18589.274616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.079 0.921 9 N -0.572 5.572 10 C 0.436 3.564 11 O -0.624 6.624 12 C 0.065 3.935 13 N -0.681 5.681 14 C 0.085 3.915 15 C -0.121 4.121 16 C -0.167 4.167 17 C 0.151 3.849 18 N -0.707 5.707 19 C 0.496 3.504 20 O -0.560 6.560 21 C 0.114 3.886 22 F -0.196 7.196 23 C -0.139 4.139 24 C -0.119 4.119 25 C -0.123 4.123 26 C -0.118 4.118 27 C -0.123 4.123 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.344 0.656 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.113 0.887 36 H 0.131 0.869 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.415 0.585 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.083 0.917 48 H 0.069 0.931 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.568 -25.084 8.931 27.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.511 6.511 12 C -0.068 4.068 13 N -0.313 5.313 14 C -0.043 4.043 15 C -0.140 4.140 16 C -0.186 4.186 17 C 0.029 3.971 18 N -0.358 5.358 19 C 0.280 3.720 20 O -0.439 6.439 21 C 0.093 3.907 22 F -0.177 7.177 23 C -0.176 4.176 24 C -0.156 4.156 25 C -0.160 4.160 26 C -0.155 4.155 27 C -0.161 4.161 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.163 0.837 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.131 0.869 36 H 0.149 0.851 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.251 0.749 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.102 0.898 48 H 0.088 0.912 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.456 -25.472 9.005 28.310 hybrid contribution -0.864 1.163 -0.809 1.659 sum 7.592 -24.310 8.196 26.754 Atomic orbital electron populations 1.69666 1.06793 1.29365 1.50179 1.26036 0.96560 1.02401 0.96234 0.84992 0.77765 0.76655 0.78941 1.19728 1.19486 1.19720 1.19636 0.92728 0.84076 1.50102 0.90328 1.41927 1.09355 1.04700 1.64987 1.20906 0.88268 0.86223 0.82225 1.90491 1.15917 1.87983 1.56716 1.21551 0.93982 0.87945 1.03299 1.60141 1.19063 1.00676 1.51461 1.21137 0.94685 0.86265 1.02179 1.22819 0.98603 0.93715 0.98872 1.22734 0.99836 0.95867 1.00174 1.20361 0.93724 0.98260 0.84774 1.46021 1.38273 1.34148 1.17329 1.21238 0.80093 0.80577 0.90067 1.90709 1.64759 1.40960 1.47433 1.21219 0.87234 1.00940 0.81346 1.92882 1.66315 1.97476 1.61012 1.22186 1.00028 0.94405 1.01028 1.21529 0.99031 0.99687 0.95370 1.21612 0.97823 0.93526 1.03062 1.21554 0.99452 0.99235 0.95277 1.21910 0.98357 0.95467 1.00386 0.91287 0.76917 0.91356 0.87588 0.83714 0.89408 0.92858 0.86898 0.85123 0.90517 0.91474 0.74865 0.89238 0.89721 0.91362 0.89866 0.90225 0.91252 0.91604 0.89806 0.91241 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.10 13.05 21.66 0.28 -48.82 16 2 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 3 Si 0.99 42.54 29.55 68.60 2.03 44.57 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.34 -18.96 9.68 84.04 0.81 -18.14 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.70 16 9 N -0.57 -29.03 5.29 -306.99 -1.62 -30.65 16 10 C 0.44 20.43 7.82 87.66 0.69 21.11 16 11 O -0.62 -34.32 15.78 -3.07 -0.05 -34.37 16 12 C 0.06 2.11 6.17 85.56 0.53 2.63 16 13 N -0.68 -20.25 6.11 -521.98 -3.19 -23.45 16 14 C 0.09 1.75 6.12 85.55 0.52 2.27 16 15 C -0.12 -2.20 9.38 25.65 0.24 -1.96 16 16 C -0.17 -2.62 9.24 25.65 0.24 -2.39 16 17 C 0.15 2.61 6.11 85.63 0.52 3.14 16 18 N -0.71 -12.35 5.51 -466.78 -2.57 -14.92 16 19 C 0.50 10.36 6.82 87.66 0.60 10.95 16 20 O -0.56 -15.31 15.98 -3.02 -0.05 -15.35 16 21 C 0.11 1.90 1.05 -11.54 -0.01 1.89 16 22 F -0.20 -3.58 15.76 44.97 0.71 -2.87 16 23 C -0.14 -1.87 4.95 30.60 0.15 -1.72 16 24 C -0.12 -1.33 5.80 30.59 0.18 -1.15 16 25 C -0.12 -1.20 5.92 30.59 0.18 -1.02 16 26 C -0.12 -1.34 5.80 30.59 0.18 -1.16 16 27 C -0.12 -1.91 4.30 30.59 0.13 -1.77 16 28 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 29 H 0.40 19.01 7.90 -92.71 -0.73 18.27 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.34 10.86 8.42 -89.69 -0.76 10.10 16 33 H 0.09 1.63 7.79 -2.39 -0.02 1.61 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.11 2.05 7.84 -2.91 -0.02 2.03 16 36 H 0.13 1.75 7.84 -2.91 -0.02 1.73 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.27 7.79 -2.39 -0.02 1.26 16 39 H 0.41 5.93 8.25 -92.71 -0.76 5.17 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.09 7.92 -2.38 -0.02 1.07 16 42 H 0.07 0.82 7.80 -2.39 -0.02 0.80 16 43 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.07 0.81 7.80 -2.38 -0.02 0.79 16 47 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 48 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.09 1.37 8.04 -2.38 -0.02 1.36 16 Total: -1.00 -70.51 407.31 -0.32 -70.83 By element: Atomic # 1 Polarization: 43.80 SS G_CDS: -1.28 Total: 42.53 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 5.42 Total: 12.50 kcal Atomic # 7 Polarization: -110.73 SS G_CDS: -7.10 Total: -117.84 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -0.10 Total: -49.73 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.71 Total: -2.87 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -70.51 -0.32 -70.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568944745.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.958 kcal (2) G-P(sol) polarization free energy of solvation -70.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds