Wall clock time and date at job start Sat Apr 11 2020 06:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86802 * 119.99807 * 2 1 4 4 H 1.48500 * 109.46981 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47453 * 299.99842 * 3 2 1 6 6 H 1.48505 * 109.47036 * 60.00128 * 3 2 1 7 7 C 1.38949 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99869 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00153 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00244 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99828 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00091 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47089 * 179.97438 * 12 10 9 14 14 C 1.46904 * 111.00137 * 187.06361 * 13 12 10 15 15 C 1.53001 * 115.54884 * 295.05096 * 14 13 12 16 16 N 1.46500 * 109.46887 * 270.33021 * 15 14 13 17 17 C 1.34782 * 120.00088 * 187.41675 * 16 15 14 18 18 O 1.21283 * 119.99447 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00253 * 179.97438 * 17 16 15 20 20 H 1.08999 * 109.46962 * 59.99522 * 19 17 16 21 21 C 1.52996 * 109.47148 * 179.97438 * 19 17 16 22 22 C 1.53001 * 109.47256 * 179.97438 * 21 19 17 23 23 C 1.52999 * 109.47193 * 300.00217 * 22 21 19 24 24 C 1.53001 * 109.46980 * 60.00006 * 23 22 21 25 25 H 1.09000 * 109.47070 * 180.02562 * 24 23 22 26 26 F 1.39898 * 109.47614 * 59.99883 * 24 23 22 27 27 C 1.52999 * 109.47138 * 299.99793 * 19 17 16 28 28 C 1.52997 * 117.51613 * 80.74808 * 14 13 12 29 29 C 1.52999 * 117.49880 * 149.37936 * 14 13 12 30 30 H 0.97001 * 120.00221 * 359.97438 * 1 2 3 31 31 H 0.97004 * 120.00169 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46765 * 60.00376 * 12 10 9 33 33 H 1.08996 * 109.47491 * 300.00003 * 12 10 9 34 34 H 1.00907 * 110.99526 * 63.11228 * 13 12 10 35 35 H 1.08994 * 109.46994 * 150.32955 * 15 14 13 36 36 H 1.08995 * 109.47197 * 30.32581 * 15 14 13 37 37 H 0.96999 * 120.00265 * 7.40768 * 16 15 14 38 38 H 1.08994 * 109.47236 * 300.00342 * 21 19 17 39 39 H 1.08999 * 109.47314 * 60.00062 * 21 19 17 40 40 H 1.08999 * 109.46800 * 59.99880 * 22 21 19 41 41 H 1.08994 * 109.47351 * 179.97438 * 22 21 19 42 42 H 1.09001 * 109.47060 * 300.00092 * 23 22 21 43 43 H 1.08998 * 109.47243 * 179.97438 * 23 22 21 44 44 H 1.09001 * 109.47060 * 300.00258 * 27 19 17 45 45 H 1.08999 * 109.46877 * 60.00170 * 27 19 17 46 46 H 1.08997 * 117.49771 * 214.96601 * 28 14 13 47 47 H 1.09001 * 117.50028 * 359.97438 * 28 14 13 48 48 H 1.08997 * 117.49942 * 359.97438 * 29 14 13 49 49 H 1.08999 * 117.49702 * 145.00121 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8893 2.3965 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2439 -4.8629 0.0000 13 7 2.1985 -5.9794 -0.0007 14 6 1.5061 -7.2641 -0.1688 15 6 0.5665 -7.6614 0.9715 16 7 1.3117 -8.4269 1.9739 17 6 0.6586 -9.0118 2.9977 18 8 -0.5460 -8.9039 3.0891 19 6 1.4250 -9.7997 4.0286 20 1 2.1513 -9.1496 4.5165 21 6 0.4538 -10.3531 5.0732 22 6 1.2318 -11.1536 6.1195 23 6 1.9610 -12.3123 5.4366 24 6 2.9323 -11.7588 4.3920 25 1 3.4515 -12.5844 3.9051 26 9 3.8651 -10.9251 5.0180 27 6 2.1551 -10.9581 3.3460 28 6 1.1057 -7.6708 -1.5883 29 6 2.2614 -8.3854 -0.8850 30 1 -0.4850 0.8400 0.0004 31 1 0.3534 -2.3907 -0.0005 32 1 0.6170 -4.9208 -0.8897 33 1 0.6176 -4.9205 0.8902 34 1 2.7580 -5.9774 0.8391 35 1 -0.2452 -8.2726 0.5771 36 1 0.1545 -6.7637 1.4323 37 1 2.2751 -8.5129 1.9009 38 1 -0.0660 -9.5276 5.5594 39 1 -0.2728 -11.0030 4.5855 40 1 1.9586 -10.5040 6.6072 41 1 0.5400 -11.5475 6.8639 42 1 1.2342 -12.9619 4.9487 43 1 2.5157 -12.8823 6.1819 44 1 1.4288 -11.6081 2.8579 45 1 2.8471 -10.5634 2.6020 46 1 0.1730 -8.2216 -1.7099 47 1 1.3557 -6.9850 -2.3978 48 1 3.2720 -8.1698 -1.2319 49 1 2.0890 -9.4061 -0.5439 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569400480.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:46 Heat of formation + Delta-G solvation = -141.229531 kcal Electronic energy + Delta-G solvation = -29810.221685 eV Core-core repulsion = 25492.249038 eV Total energy + Delta-G solvation = -4317.972647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.57874 -41.28847 -40.29188 -39.26107 -37.97117 -36.03872 -35.23603 -34.11515 -33.23018 -32.28565 -31.31296 -28.54648 -27.91032 -25.92439 -24.60789 -23.61358 -23.31124 -21.47706 -21.14957 -20.78413 -20.42271 -19.91394 -18.62682 -17.87301 -17.25265 -17.12907 -16.88317 -16.64021 -16.44859 -16.31818 -16.17127 -15.84597 -15.79079 -15.24362 -15.15334 -15.07592 -14.59637 -14.36557 -14.15310 -13.87282 -13.61402 -13.49531 -13.44251 -13.26671 -13.06157 -12.88225 -12.74912 -12.51557 -12.42655 -12.30518 -12.14480 -12.12604 -11.73263 -11.55359 -11.53172 -11.50969 -11.15297 -11.03100 -10.61483 -10.38191 -10.16501 -10.03849 -9.48856 -8.48561 -5.97663 1.35228 1.40411 1.54885 1.55635 2.01884 2.03461 2.26550 2.68126 2.94823 3.18208 3.42260 3.44114 3.52140 3.55211 3.65355 3.88586 3.94073 4.06195 4.06409 4.10980 4.14903 4.24145 4.30807 4.35855 4.37016 4.51020 4.52511 4.58915 4.61474 4.66484 4.80925 4.81348 4.89688 5.01353 5.05295 5.07278 5.14278 5.20032 5.27421 5.31152 5.36723 5.39144 5.45464 5.83627 6.05026 6.31591 6.47126 6.57236 7.10315 7.17170 7.53392 8.08343 8.69102 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.015073 B = 0.002086 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.187316 B =13417.998846 C =13982.580038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.332 4.332 8 H 0.080 0.920 9 N -0.574 5.574 10 C 0.439 3.561 11 O -0.620 6.620 12 C 0.068 3.932 13 N -0.635 5.635 14 C 0.003 3.997 15 C 0.135 3.865 16 N -0.713 5.713 17 C 0.516 3.484 18 O -0.582 6.582 19 C -0.102 4.102 20 H 0.101 0.899 21 C -0.098 4.098 22 C -0.119 4.119 23 C -0.146 4.146 24 C 0.089 3.911 25 H 0.112 0.888 26 F -0.228 7.228 27 C -0.133 4.133 28 C -0.148 4.148 29 C -0.130 4.130 30 H 0.278 0.722 31 H 0.395 0.605 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.347 0.653 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.412 0.588 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.115 0.885 47 H 0.092 0.908 48 H 0.100 0.900 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.997 -28.822 6.541 29.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.215 4.215 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.462 4.462 8 H 0.098 0.902 9 N -0.211 5.211 10 C 0.227 3.773 11 O -0.506 6.506 12 C -0.064 4.064 13 N -0.265 5.265 14 C -0.089 4.089 15 C 0.009 3.991 16 N -0.365 5.365 17 C 0.303 3.697 18 O -0.462 6.462 19 C -0.124 4.124 20 H 0.119 0.881 21 C -0.136 4.136 22 C -0.156 4.156 23 C -0.183 4.183 24 C 0.053 3.947 25 H 0.129 0.871 26 F -0.209 7.209 27 C -0.171 4.171 28 C -0.186 4.186 29 C -0.168 4.168 30 H 0.087 0.913 31 H 0.229 0.771 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.166 0.834 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.249 0.751 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.115 0.885 43 H 0.102 0.898 44 H 0.116 0.884 45 H 0.110 0.890 46 H 0.133 0.867 47 H 0.110 0.890 48 H 0.119 0.881 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.995 -28.470 5.937 29.100 hybrid contribution -0.274 1.451 0.909 1.734 sum 0.720 -27.019 6.847 27.882 Atomic orbital electron populations 1.69685 1.06886 1.29267 1.50375 1.26080 0.96569 1.02531 0.96284 0.84851 0.78042 0.76981 0.78339 1.19693 1.19524 1.19629 1.19701 0.92695 0.83951 1.49836 0.90242 1.41953 1.09316 1.04798 1.65078 1.20812 0.88247 0.86021 0.82255 1.90490 1.15686 1.87956 1.56515 1.21454 0.93979 0.88283 1.02729 1.59913 1.22002 0.99408 1.45207 1.21673 1.01669 0.91464 0.94137 1.21258 0.94230 0.95387 0.88232 1.45988 1.11871 1.52809 1.25824 1.21096 0.87656 0.78811 0.82118 1.90694 1.16455 1.62708 1.76323 1.21306 0.98401 0.97686 0.94977 0.88124 1.21330 0.96923 0.99725 0.95646 1.21509 0.99306 0.97146 0.97686 1.22181 0.98941 0.98390 0.98798 1.21755 0.87963 0.91837 0.93114 0.87052 1.92790 1.68336 1.75029 1.84794 1.22150 1.00127 0.96648 0.98155 1.23165 1.00345 1.02604 0.92500 1.23113 0.97515 0.95487 1.00683 0.91292 0.77092 0.87888 0.92379 0.83420 0.90209 0.93323 0.75078 0.92917 0.91321 0.92188 0.90224 0.88508 0.89820 0.88393 0.89049 0.86692 0.88959 0.88147 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.57 13.05 21.66 0.28 -50.28 16 2 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 3 Si 0.99 43.50 29.55 68.60 2.03 45.53 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 7 C -0.33 -19.16 9.68 84.04 0.81 -18.34 16 8 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 9 N -0.57 -30.08 5.29 -306.98 -1.62 -31.71 16 10 C 0.44 21.21 7.84 87.66 0.69 21.90 16 11 O -0.62 -34.58 15.93 -3.08 -0.05 -34.63 16 12 C 0.07 2.37 5.88 85.56 0.50 2.87 16 13 N -0.63 -19.18 6.12 -474.15 -2.90 -22.08 16 14 C 0.00 0.06 1.79 3.53 0.01 0.07 16 15 C 0.13 2.93 5.78 86.38 0.50 3.43 16 16 N -0.71 -13.18 5.29 -463.06 -2.45 -15.62 16 17 C 0.52 11.14 7.15 87.66 0.63 11.77 16 18 O -0.58 -17.58 15.95 -3.04 -0.05 -17.63 16 19 C -0.10 -1.60 2.40 -11.54 -0.03 -1.63 16 20 H 0.10 1.65 7.80 -2.39 -0.02 1.63 16 21 C -0.10 -1.58 4.49 30.59 0.14 -1.44 16 22 C -0.12 -1.41 5.80 30.59 0.18 -1.23 16 23 C -0.15 -1.17 5.72 30.59 0.17 -0.99 16 24 C 0.09 0.80 4.12 30.58 0.13 0.93 16 25 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 26 F -0.23 -3.57 16.04 44.97 0.72 -2.85 16 27 C -0.13 -1.27 4.89 30.58 0.15 -1.12 16 28 C -0.15 -2.79 10.05 30.59 0.31 -2.48 16 29 C -0.13 -2.12 9.80 30.60 0.30 -1.82 16 30 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 31 H 0.40 19.82 7.90 -92.71 -0.73 19.09 16 32 H 0.10 3.31 8.06 -2.39 -0.02 3.29 16 33 H 0.06 1.90 6.85 -2.39 -0.02 1.89 16 34 H 0.35 10.83 8.77 -89.69 -0.79 10.04 16 35 H 0.08 1.71 7.83 -2.39 -0.02 1.69 16 36 H 0.05 1.30 6.58 -2.39 -0.02 1.28 16 37 H 0.41 5.91 7.71 -92.71 -0.71 5.20 16 38 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 39 H 0.07 1.14 8.10 -2.39 -0.02 1.12 16 40 H 0.06 0.84 7.80 -2.39 -0.02 0.82 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.10 0.51 8.14 -2.39 -0.02 0.50 16 43 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.09 0.69 7.56 -2.39 -0.02 0.67 16 46 H 0.11 1.73 8.03 -2.39 -0.02 1.71 16 47 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -73.95 401.15 -0.33 -74.29 By element: Atomic # 1 Polarization: 44.67 SS G_CDS: -1.24 Total: 43.43 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 4.95 Total: 11.56 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -6.69 Total: -119.70 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -0.10 Total: -52.26 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.72 Total: -2.85 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -73.95 -0.33 -74.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569400480.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.944 kcal (2) G-P(sol) polarization free energy of solvation -73.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds