Wall clock time and date at job start Sat Apr 11 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00147 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00098 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99897 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 0.02562 * 7 2 1 9 9 N 1.37090 * 119.99992 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99714 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00111 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99627 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47177 * 179.97438 * 12 10 9 14 14 C 1.48473 * 110.99819 * 287.60717 * 13 12 10 15 15 C 1.54922 * 103.22340 * 200.16344 * 14 13 12 16 16 C 1.54453 * 102.93622 * 37.70500 * 15 14 13 17 17 N 1.46505 * 112.39448 * 99.36888 * 16 15 14 18 18 C 1.34778 * 120.00131 * 62.11169 * 17 16 15 19 19 O 1.21276 * 119.99832 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.99699 * 179.97438 * 18 17 16 21 21 C 1.53008 * 109.46659 * 179.97438 * 20 18 17 22 22 C 1.52991 * 109.46734 * 179.97438 * 21 20 18 23 23 F 1.39904 * 109.47262 * 180.02562 * 22 21 20 24 24 C 1.54109 * 109.03259 * 223.77337 * 16 15 14 25 25 C 1.54878 * 104.15800 * 137.48537 * 24 16 15 26 26 C 1.54827 * 102.74104 * 321.54634 * 25 24 16 27 27 C 1.47922 * 111.00338 * 169.99539 * 13 12 10 28 28 H 1.09001 * 111.35174 * 23.09874 * 27 13 12 29 29 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00238 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.47076 * 299.99278 * 12 10 9 32 32 H 1.09002 * 109.47753 * 59.99519 * 12 10 9 33 33 H 1.08999 * 110.66942 * 318.59795 * 14 13 12 34 34 H 1.09009 * 110.67094 * 81.73208 * 14 13 12 35 35 H 1.09002 * 110.72621 * 279.34980 * 15 14 13 36 36 H 1.08997 * 110.72460 * 156.06671 * 15 14 13 37 37 H 0.97003 * 119.99702 * 242.10329 * 17 16 15 38 38 H 1.09000 * 109.46896 * 299.99108 * 20 18 17 39 39 H 1.08996 * 109.46948 * 59.99965 * 20 18 17 40 40 H 1.08995 * 109.46644 * 299.99702 * 21 20 18 41 41 H 1.09003 * 109.47035 * 59.99742 * 21 20 18 42 42 H 1.09003 * 109.47669 * 299.99990 * 22 21 20 43 43 H 1.09003 * 109.47416 * 60.00164 * 22 21 20 44 44 H 1.09003 * 110.49010 * 18.81298 * 24 16 15 45 45 H 1.09004 * 110.49493 * 256.15415 * 24 16 15 46 46 H 1.09001 * 110.75692 * 203.23827 * 25 24 16 47 47 H 1.08991 * 110.91935 * 79.93708 * 25 24 16 48 48 H 1.08998 * 110.44293 * 279.06185 * 26 25 24 49 49 H 1.08996 * 110.43963 * 156.52897 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4402 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0090 -1.2034 0.0005 8 1 1.4690 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3706 0.0000 11 8 3.4473 -3.4210 0.0009 12 6 5.5607 -2.3705 0.0000 13 7 6.0505 -3.7555 0.0006 14 6 5.8326 -4.3963 1.3221 15 6 6.8330 -5.5791 1.3117 16 6 8.0620 -4.9861 0.5882 17 7 9.1060 -4.5564 1.5220 18 6 9.7029 -5.4579 2.3266 19 8 9.3756 -6.6246 2.2780 20 6 10.7772 -5.0160 3.2868 21 6 11.2844 -6.2247 4.0760 22 6 12.3754 -5.7762 5.0503 23 9 12.8396 -6.8814 5.7716 24 6 8.5942 -6.0173 -0.4259 25 6 8.9171 -5.1772 -1.6864 26 6 7.7562 -4.1533 -1.7210 27 6 7.5094 -3.8020 -0.2393 28 1 7.9861 -2.8595 0.0300 29 1 -0.4850 0.8401 0.0004 30 1 3.8649 -0.3633 -0.0011 31 1 5.9240 -1.8567 -0.8901 32 1 5.9242 -1.8566 0.8899 33 1 6.0659 -3.7021 2.1294 34 1 4.8085 -4.7594 1.4095 35 1 6.4271 -6.4228 0.7536 36 1 7.0902 -5.8757 2.3285 37 1 9.3676 -3.6232 1.5610 38 1 11.6027 -4.5731 2.7296 39 1 10.3670 -4.2783 3.9764 40 1 10.4587 -6.6672 4.6332 41 1 11.6944 -6.9627 3.3866 42 1 13.2010 -5.3338 4.4928 43 1 11.9658 -5.0379 5.7398 44 1 7.8303 -6.7622 -0.6491 45 1 9.4962 -6.4965 -0.0453 46 1 8.9080 -5.8018 -2.5797 47 1 9.8762 -4.6704 -1.5810 48 1 6.8652 -4.6028 -2.1592 49 1 8.0493 -3.2643 -2.2793 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571504020.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:04 Heat of formation + Delta-G solvation = -120.110624 kcal Electronic energy + Delta-G solvation = -30404.536296 eV Core-core repulsion = 26087.479433 eV Total energy + Delta-G solvation = -4317.056862 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -47.98580 -41.03773 -39.21762 -38.10912 -35.15198 -34.39946 -33.94750 -33.84813 -31.74738 -31.31409 -28.47065 -28.08197 -26.35730 -25.84883 -23.80621 -22.92801 -21.67213 -20.87451 -19.93427 -19.57618 -19.35302 -18.38234 -17.51548 -16.95310 -16.57947 -16.14196 -16.11136 -15.64527 -15.16399 -15.10281 -15.08241 -14.84482 -14.39065 -14.36976 -13.89137 -13.68129 -13.61318 -13.24575 -12.98078 -12.66511 -12.47473 -12.35070 -12.16706 -11.99246 -11.87394 -11.64323 -11.48449 -11.39128 -11.26233 -11.15753 -11.09835 -11.01578 -10.87134 -10.86081 -10.61511 -10.55796 -9.98721 -9.97099 -9.56784 -9.20856 -8.63051 -8.19812 -8.11632 -6.31636 -3.82945 2.36473 2.77941 3.00141 3.04181 3.12965 3.73234 3.88369 4.07692 4.10089 4.16327 4.24922 4.29038 4.43481 4.56449 4.69952 4.75080 4.76851 4.82417 5.00166 5.10567 5.14505 5.15935 5.16843 5.23621 5.27170 5.41086 5.48294 5.50029 5.55468 5.64173 5.65939 5.76725 5.79752 5.83002 5.89444 5.94325 5.99419 6.07366 6.13807 6.28855 6.39906 6.43873 7.02799 7.10652 7.23686 7.57767 7.96675 8.13930 8.59825 8.95041 9.41873 9.83337 10.81578 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.015766 B = 0.002288 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.603361 B =12235.701683 C =13050.443837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.040 3.960 3 Si 0.880 3.120 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.277 1.277 7 C -0.303 4.303 8 H 0.120 0.880 9 N -0.593 5.593 10 C 0.455 3.545 11 O -0.556 6.556 12 C 0.033 3.967 13 N -0.481 5.481 14 C 0.039 3.961 15 C -0.118 4.118 16 C 0.165 3.835 17 N -0.716 5.716 18 C 0.513 3.487 19 O -0.529 6.529 20 C -0.140 4.140 21 C -0.138 4.138 22 C 0.062 3.938 23 F -0.218 7.218 24 C -0.115 4.115 25 C -0.124 4.124 26 C -0.110 4.110 27 C 0.061 3.939 28 H 0.062 0.938 29 H 0.273 0.727 30 H 0.369 0.631 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.037 0.963 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.398 0.602 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.088 0.912 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.198 -4.726 4.109 27.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.163 4.163 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.202 1.202 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.233 5.233 10 C 0.240 3.760 11 O -0.437 6.437 12 C -0.098 4.098 13 N -0.204 5.204 14 C -0.089 4.089 15 C -0.156 4.156 16 C 0.078 3.922 17 N -0.368 5.368 18 C 0.299 3.701 19 O -0.405 6.405 20 C -0.181 4.181 21 C -0.177 4.177 22 C 0.007 3.993 23 F -0.199 7.199 24 C -0.154 4.154 25 C -0.162 4.162 26 C -0.149 4.149 27 C -0.049 4.049 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.202 0.798 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.233 0.767 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.107 0.893 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 26.034 -6.460 3.680 27.075 hybrid contribution 1.089 2.610 0.679 2.908 sum 27.122 -3.851 4.359 27.739 Atomic orbital electron populations 1.69622 1.05613 1.27437 1.49527 1.25040 0.95492 0.97935 0.97786 0.86675 0.79778 0.84151 0.78782 1.19734 1.19545 1.20184 1.19419 0.79207 0.96601 1.47945 0.86282 1.42206 1.07517 1.06076 1.67498 1.19576 0.87909 0.84571 0.83954 1.90558 1.69293 1.30813 1.53069 1.22119 0.96059 0.90193 1.01478 1.64640 1.10297 1.15408 1.30085 1.23357 1.01694 0.94915 0.88885 1.22859 0.93324 0.98271 1.01189 1.21545 0.87369 0.94463 0.88806 1.46062 1.39524 1.11368 1.39837 1.20509 0.82586 0.86079 0.80880 1.90736 1.63835 1.17690 1.68260 1.21570 0.98268 0.99833 0.98397 1.21904 0.99150 0.98007 0.98598 1.22002 0.97482 0.85885 0.93978 1.92780 1.90369 1.56761 1.79999 1.22640 1.01865 0.96949 0.93940 1.22526 0.97995 0.97596 0.98089 1.22392 0.99219 0.98891 0.94351 1.23249 0.89386 0.95999 0.96221 0.92013 0.91643 0.79832 0.89276 0.93287 0.94516 0.88081 0.89625 0.90662 0.76743 0.88593 0.88540 0.89818 0.89901 0.90778 0.90711 0.90192 0.90979 0.91287 0.92022 0.89328 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.66 13.96 55.50 0.77 -24.89 16 2 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 3 Si 0.88 19.13 27.74 -169.99 -4.71 14.41 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.50 10.16 -14.93 -0.15 -8.65 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 N -0.59 -13.91 5.09 -10.96 -0.06 -13.96 16 10 C 0.45 10.13 7.61 -10.98 -0.08 10.04 16 11 O -0.56 -14.69 14.62 5.55 0.08 -14.61 16 12 C 0.03 0.54 5.21 -4.98 -0.03 0.51 16 13 N -0.48 -7.31 4.37 -222.84 -0.97 -8.28 16 14 C 0.04 0.59 5.93 -1.94 -0.01 0.58 16 15 C -0.12 -1.55 5.87 -24.95 -0.15 -1.70 16 16 C 0.16 1.78 0.83 -129.60 -0.11 1.67 16 17 N -0.72 -5.94 5.26 -45.56 -0.24 -6.18 16 18 C 0.51 4.63 6.89 -10.98 -0.08 4.56 16 19 O -0.53 -6.84 13.52 5.56 0.08 -6.77 16 20 C -0.14 -0.72 5.70 -27.88 -0.16 -0.88 16 21 C -0.14 -0.91 4.96 -26.73 -0.13 -1.04 16 22 C 0.06 0.32 7.55 37.15 0.28 0.60 16 23 F -0.22 -1.96 17.36 2.25 0.04 -1.92 16 24 C -0.12 -1.24 5.64 -25.16 -0.14 -1.38 16 25 C -0.12 -1.14 6.90 -24.78 -0.17 -1.31 16 26 C -0.11 -1.17 6.51 -25.10 -0.16 -1.34 16 27 C 0.06 0.69 3.04 -65.61 -0.20 0.49 16 28 H 0.06 0.59 7.38 -51.93 -0.38 0.21 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.37 7.57 5.76 -40.82 -0.24 7.33 16 31 H 0.09 1.25 8.08 -51.93 -0.42 0.83 16 32 H 0.05 0.69 7.84 -51.93 -0.41 0.28 16 33 H 0.04 0.53 7.81 -51.93 -0.41 0.12 16 34 H 0.10 1.87 7.08 -51.92 -0.37 1.50 16 35 H 0.09 1.20 7.22 -51.93 -0.37 0.82 16 36 H 0.07 1.02 6.90 -51.93 -0.36 0.66 16 37 H 0.40 2.26 8.30 -40.82 -0.34 1.92 16 38 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 42 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 0.94 7.21 -51.93 -0.37 0.56 16 45 H 0.07 0.82 6.63 -51.93 -0.34 0.48 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.09 1.13 7.97 -51.93 -0.41 0.72 16 49 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 388.02 15.07 5.85 5.85 Total: -1.00 -34.58 388.02 -8.33 -42.92 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -7.78 Total: 10.28 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -1.39 Total: 3.16 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.49 Total: -53.31 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.16 Total: -21.38 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.41 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.58 -8.33 -42.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571504020.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.196 kcal (2) G-P(sol) polarization free energy of solvation -34.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds