Wall clock time and date at job start Sat Apr 11 2020 06:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00147 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00098 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99897 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 0.02562 * 7 2 1 9 9 N 1.37090 * 119.99992 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99714 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00111 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99627 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47177 * 179.97438 * 12 10 9 14 14 C 1.48473 * 110.99819 * 287.60717 * 13 12 10 15 15 C 1.54922 * 103.22340 * 200.16344 * 14 13 12 16 16 C 1.54453 * 102.93622 * 37.70500 * 15 14 13 17 17 N 1.46505 * 112.39448 * 99.36888 * 16 15 14 18 18 C 1.34778 * 120.00131 * 62.11169 * 17 16 15 19 19 O 1.21276 * 119.99832 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.99699 * 179.97438 * 18 17 16 21 21 C 1.53008 * 109.46659 * 179.97438 * 20 18 17 22 22 C 1.52991 * 109.46734 * 179.97438 * 21 20 18 23 23 F 1.39904 * 109.47262 * 180.02562 * 22 21 20 24 24 C 1.54109 * 109.03259 * 223.77337 * 16 15 14 25 25 C 1.54878 * 104.15800 * 137.48537 * 24 16 15 26 26 C 1.54827 * 102.74104 * 321.54634 * 25 24 16 27 27 C 1.47922 * 111.00338 * 169.99539 * 13 12 10 28 28 H 1.09001 * 111.35174 * 23.09874 * 27 13 12 29 29 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00238 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.47076 * 299.99278 * 12 10 9 32 32 H 1.09002 * 109.47753 * 59.99519 * 12 10 9 33 33 H 1.08999 * 110.66942 * 318.59795 * 14 13 12 34 34 H 1.09009 * 110.67094 * 81.73208 * 14 13 12 35 35 H 1.09002 * 110.72621 * 279.34980 * 15 14 13 36 36 H 1.08997 * 110.72460 * 156.06671 * 15 14 13 37 37 H 0.97003 * 119.99702 * 242.10329 * 17 16 15 38 38 H 1.09000 * 109.46896 * 299.99108 * 20 18 17 39 39 H 1.08996 * 109.46948 * 59.99965 * 20 18 17 40 40 H 1.08995 * 109.46644 * 299.99702 * 21 20 18 41 41 H 1.09003 * 109.47035 * 59.99742 * 21 20 18 42 42 H 1.09003 * 109.47669 * 299.99990 * 22 21 20 43 43 H 1.09003 * 109.47416 * 60.00164 * 22 21 20 44 44 H 1.09003 * 110.49010 * 18.81298 * 24 16 15 45 45 H 1.09004 * 110.49493 * 256.15415 * 24 16 15 46 46 H 1.09001 * 110.75692 * 203.23827 * 25 24 16 47 47 H 1.08991 * 110.91935 * 79.93708 * 25 24 16 48 48 H 1.08998 * 110.44293 * 279.06185 * 26 25 24 49 49 H 1.08996 * 110.43963 * 156.52897 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4402 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0090 -1.2034 0.0005 8 1 1.4690 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3706 0.0000 11 8 3.4473 -3.4210 0.0009 12 6 5.5607 -2.3705 0.0000 13 7 6.0505 -3.7555 0.0006 14 6 5.8326 -4.3963 1.3221 15 6 6.8330 -5.5791 1.3117 16 6 8.0620 -4.9861 0.5882 17 7 9.1060 -4.5564 1.5220 18 6 9.7029 -5.4579 2.3266 19 8 9.3756 -6.6246 2.2780 20 6 10.7772 -5.0160 3.2868 21 6 11.2844 -6.2247 4.0760 22 6 12.3754 -5.7762 5.0503 23 9 12.8396 -6.8814 5.7716 24 6 8.5942 -6.0173 -0.4259 25 6 8.9171 -5.1772 -1.6864 26 6 7.7562 -4.1533 -1.7210 27 6 7.5094 -3.8020 -0.2393 28 1 7.9861 -2.8595 0.0300 29 1 -0.4850 0.8401 0.0004 30 1 3.8649 -0.3633 -0.0011 31 1 5.9240 -1.8567 -0.8901 32 1 5.9242 -1.8566 0.8899 33 1 6.0659 -3.7021 2.1294 34 1 4.8085 -4.7594 1.4095 35 1 6.4271 -6.4228 0.7536 36 1 7.0902 -5.8757 2.3285 37 1 9.3676 -3.6232 1.5610 38 1 11.6027 -4.5731 2.7296 39 1 10.3670 -4.2783 3.9764 40 1 10.4587 -6.6672 4.6332 41 1 11.6944 -6.9627 3.3866 42 1 13.2010 -5.3338 4.4928 43 1 11.9658 -5.0379 5.7398 44 1 7.8303 -6.7622 -0.6491 45 1 9.4962 -6.4965 -0.0453 46 1 8.9080 -5.8018 -2.5797 47 1 9.8762 -4.6704 -1.5810 48 1 6.8652 -4.6028 -2.1592 49 1 8.0493 -3.2643 -2.2793 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571504020.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:02 Heat of formation + Delta-G solvation = -147.148441 kcal Electronic energy + Delta-G solvation = -30405.708743 eV Core-core repulsion = 26087.479433 eV Total energy + Delta-G solvation = -4318.229310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -48.53567 -41.93758 -40.39083 -39.55825 -36.38037 -35.71605 -34.93514 -34.71533 -33.74781 -32.43760 -29.63475 -28.72235 -27.37754 -27.09365 -25.41660 -23.57971 -22.50585 -21.79337 -21.25850 -20.70543 -20.42672 -20.18634 -18.35761 -17.64149 -17.47318 -17.40631 -16.78316 -16.66883 -16.46412 -16.29998 -16.05428 -15.70726 -15.58375 -15.35595 -15.02794 -14.97337 -14.58089 -14.50460 -14.23315 -14.09160 -14.01383 -13.41801 -13.07498 -12.97691 -12.77617 -12.67991 -12.51826 -12.39947 -12.35183 -12.15445 -12.01013 -11.98310 -11.93487 -11.89694 -11.72680 -11.52236 -11.48230 -11.41264 -10.74471 -10.39242 -10.23036 -10.00010 -9.35003 -8.39810 -6.00749 1.30393 1.36644 1.45750 1.70311 1.98834 2.08690 2.24428 2.66763 3.10126 3.16273 3.34904 3.54706 3.63599 3.77992 3.81087 3.91394 4.09569 4.14798 4.19345 4.21374 4.26967 4.30548 4.34954 4.41499 4.43769 4.46657 4.52972 4.66974 4.69763 4.77085 4.79672 4.85005 4.91830 5.00756 5.03974 5.05300 5.13234 5.21054 5.25650 5.30159 5.44644 5.55100 5.61557 5.86143 5.95778 6.11484 6.61129 6.62599 6.90693 7.34038 7.41995 8.00695 8.78065 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.015766 B = 0.002288 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.603361 B =12235.701683 C =13050.443837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.019 4.019 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.228 1.228 6 H -0.277 1.277 7 C -0.326 4.326 8 H 0.052 0.948 9 N -0.592 5.592 10 C 0.451 3.549 11 O -0.609 6.609 12 C 0.046 3.954 13 N -0.507 5.507 14 C 0.044 3.956 15 C -0.112 4.112 16 C 0.173 3.827 17 N -0.703 5.703 18 C 0.507 3.493 19 O -0.577 6.577 20 C -0.129 4.129 21 C -0.137 4.137 22 C 0.058 3.942 23 F -0.243 7.243 24 C -0.115 4.115 25 C -0.112 4.112 26 C -0.110 4.110 27 C 0.066 3.934 28 H 0.099 0.901 29 H 0.278 0.722 30 H 0.390 0.610 31 H 0.124 0.876 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.417 0.583 38 H 0.131 0.869 39 H 0.123 0.877 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.057 0.943 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.085 0.915 48 H 0.058 0.942 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.135 -0.719 3.984 32.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.217 4.217 3 Si 0.787 3.213 4 H -0.181 1.181 5 H -0.151 1.151 6 H -0.202 1.202 7 C -0.455 4.455 8 H 0.070 0.930 9 N -0.235 5.235 10 C 0.239 3.761 11 O -0.492 6.492 12 C -0.085 4.085 13 N -0.231 5.231 14 C -0.084 4.084 15 C -0.151 4.151 16 C 0.085 3.915 17 N -0.357 5.357 18 C 0.296 3.704 19 O -0.456 6.456 20 C -0.168 4.168 21 C -0.175 4.175 22 C 0.004 3.996 23 F -0.224 7.224 24 C -0.154 4.154 25 C -0.150 4.150 26 C -0.148 4.148 27 C -0.042 4.042 28 H 0.117 0.883 29 H 0.088 0.912 30 H 0.225 0.775 31 H 0.142 0.858 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.255 0.745 38 H 0.149 0.851 39 H 0.141 0.859 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.119 0.881 43 H 0.114 0.886 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.104 0.896 48 H 0.077 0.923 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 31.022 -2.433 3.554 31.319 hybrid contribution -0.552 1.162 0.725 1.477 sum 30.470 -1.271 4.279 30.795 Atomic orbital electron populations 1.69819 1.08242 1.29200 1.50532 1.26171 0.96507 1.02886 0.96173 0.85334 0.79578 0.76470 0.79914 1.18148 1.15062 1.20209 1.18967 0.81589 0.94770 1.50212 0.93028 1.42013 1.05697 1.07563 1.68214 1.20932 0.90897 0.83263 0.81019 1.90551 1.71364 1.32824 1.54481 1.22050 0.90399 0.91369 1.04685 1.64520 1.13486 1.15244 1.29899 1.23158 0.99526 0.95919 0.89800 1.22728 0.94411 0.97086 1.00880 1.21305 0.86971 0.94363 0.88817 1.45894 1.38417 1.12351 1.38991 1.21276 0.82823 0.85414 0.80906 1.90733 1.65376 1.19897 1.69600 1.21579 0.97889 0.99412 0.97920 1.21838 0.98759 0.98450 0.98498 1.22242 0.97953 0.85259 0.94177 1.92731 1.90665 1.58342 1.80657 1.22576 1.00836 0.96885 0.95119 1.22479 0.98481 0.96973 0.97065 1.22387 0.98535 0.99994 0.93919 1.23340 0.86746 0.97518 0.96597 0.88349 0.91227 0.77472 0.85847 0.89702 0.93168 0.92820 0.91757 0.91333 0.74518 0.85100 0.85876 0.92415 0.91829 0.88059 0.88552 0.92439 0.91577 0.90930 0.89605 0.92277 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.65 13.96 21.66 0.30 -56.35 16 2 C -0.02 -1.06 5.50 84.93 0.47 -0.60 16 3 Si 0.97 37.99 27.74 68.60 1.90 39.89 16 4 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 5 H -0.23 -7.33 6.52 99.48 0.65 -6.68 16 6 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.33 -19.07 10.16 84.04 0.85 -18.22 16 8 H 0.05 3.63 7.39 -2.91 -0.02 3.61 16 9 N -0.59 -27.46 5.09 -306.98 -1.56 -29.03 16 10 C 0.45 20.10 7.61 87.65 0.67 20.77 16 11 O -0.61 -33.99 14.62 -3.07 -0.04 -34.04 16 12 C 0.05 1.33 5.21 85.56 0.45 1.78 16 13 N -0.51 -14.69 4.37 -858.92 -3.75 -18.44 16 14 C 0.04 1.35 5.93 86.66 0.51 1.86 16 15 C -0.11 -3.05 5.87 31.75 0.19 -2.86 16 16 C 0.17 3.42 0.83 5.04 0.00 3.43 16 17 N -0.70 -9.25 5.26 -416.45 -2.19 -11.44 16 18 C 0.51 8.04 6.89 87.66 0.60 8.64 16 19 O -0.58 -14.93 13.52 -3.02 -0.04 -14.97 16 20 C -0.13 -0.84 5.70 29.85 0.17 -0.67 16 21 C -0.14 -1.60 4.96 30.59 0.15 -1.45 16 22 C 0.06 0.46 7.55 71.98 0.54 1.01 16 23 F -0.24 -4.13 17.36 44.97 0.78 -3.35 16 24 C -0.12 -2.39 5.64 31.61 0.18 -2.21 16 25 C -0.11 -1.74 6.90 31.86 0.22 -1.52 16 26 C -0.11 -2.00 6.51 31.65 0.21 -1.79 16 27 C 0.07 1.27 3.04 45.71 0.14 1.40 16 28 H 0.10 1.23 7.38 -2.39 -0.02 1.22 16 29 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 30 H 0.39 14.64 5.76 -92.71 -0.53 14.11 16 31 H 0.12 2.80 8.08 -2.38 -0.02 2.78 16 32 H 0.09 1.91 7.84 -2.39 -0.02 1.89 16 33 H 0.05 1.39 7.81 -2.39 -0.02 1.37 16 34 H 0.05 2.15 7.08 -2.38 -0.02 2.14 16 35 H 0.06 1.98 7.22 -2.39 -0.02 1.96 16 36 H 0.07 1.93 6.90 -2.39 -0.02 1.92 16 37 H 0.42 2.45 8.30 -92.71 -0.77 1.68 16 38 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 41 H 0.06 0.97 8.10 -2.39 -0.02 0.95 16 42 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.06 1.42 7.21 -2.39 -0.02 1.40 16 45 H 0.07 1.46 6.63 -2.38 -0.02 1.44 16 46 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.06 1.45 7.97 -2.39 -0.02 1.43 16 49 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -86.67 388.02 0.36 -86.31 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: -0.38 Total: 31.82 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 5.35 Total: 9.59 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -7.21 Total: -115.26 kcal Atomic # 8 Polarization: -48.92 SS G_CDS: -0.09 Total: -49.00 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.78 Total: -3.35 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 1.90 Total: 39.89 kcal Total: -86.67 0.36 -86.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571504020.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.834 kcal (2) G-P(sol) polarization free energy of solvation -86.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds