Wall clock time and date at job start Sat Apr 11 2020 06:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86804 * 120.00097 * 2 1 4 4 H 1.48496 * 109.47160 * 269.99832 * 3 2 1 5 5 H 1.48499 * 109.46993 * 30.00269 * 3 2 1 6 6 H 1.48505 * 109.46831 * 149.99928 * 3 2 1 7 7 C 1.38952 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99792 * 180.02562 * 7 2 1 9 9 N 1.37094 * 120.00113 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99772 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00504 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99861 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47257 * 179.97438 * 12 10 9 14 14 C 1.50151 * 110.99540 * 283.88709 * 13 12 10 15 15 C 1.54244 * 106.17127 * 214.24436 * 14 13 12 16 16 C 1.50961 * 103.69947 * 354.07593 * 15 14 13 17 17 N 1.46507 * 110.00444 * 277.80581 * 16 15 14 18 18 C 1.34775 * 119.99901 * 280.46536 * 17 16 15 19 19 O 1.21279 * 120.00300 * 359.97438 * 18 17 16 20 20 C 1.50703 * 119.99773 * 180.02562 * 18 17 16 21 21 C 1.52996 * 109.47130 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.47131 * 179.97438 * 21 20 18 23 23 F 1.39905 * 109.47157 * 180.02562 * 22 21 20 24 24 C 1.50653 * 124.38216 * 144.14698 * 16 15 14 25 25 C 1.55806 * 104.30573 * 215.18731 * 24 16 15 26 26 C 1.56273 * 105.86647 * 7.01861 * 25 24 16 27 27 C 1.44512 * 111.00106 * 170.00010 * 13 12 10 28 28 H 1.09004 * 109.38408 * 50.90586 * 27 13 12 29 29 H 0.97001 * 119.99980 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99994 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47129 * 59.99283 * 12 10 9 32 32 H 1.09003 * 109.46924 * 299.99572 * 12 10 9 33 33 H 1.08997 * 110.09176 * 333.39018 * 14 13 12 34 34 H 1.09000 * 110.08591 * 94.90423 * 14 13 12 35 35 H 1.09000 * 110.05856 * 235.60053 * 15 14 13 36 36 H 1.09000 * 110.64262 * 112.82823 * 15 14 13 37 37 H 0.97005 * 119.99489 * 100.46292 * 17 16 15 38 38 H 1.09001 * 109.46980 * 59.99839 * 20 18 17 39 39 H 1.08996 * 109.46805 * 299.99819 * 20 18 17 40 40 H 1.09001 * 109.46993 * 59.99687 * 21 20 18 41 41 H 1.09004 * 109.47298 * 300.00102 * 21 20 18 42 42 H 1.09001 * 109.46832 * 60.00325 * 22 21 20 43 43 H 1.09004 * 109.47261 * 300.00306 * 22 21 20 44 44 H 1.09001 * 110.46208 * 333.89344 * 24 16 15 45 45 H 1.08993 * 110.46427 * 96.47968 * 24 16 15 46 46 H 1.08999 * 110.17015 * 126.11733 * 25 24 16 47 47 H 1.09002 * 110.16961 * 247.85037 * 25 24 16 48 48 H 1.09010 * 110.95112 * 143.00768 * 26 25 24 49 49 H 1.08997 * 110.96205 * 266.69761 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3232 -2.3906 -0.0005 10 6 1.9971 -3.5578 -0.0005 11 8 3.2100 -3.5579 -0.0010 12 6 1.2436 -4.8629 -0.0011 13 7 2.1982 -5.9796 -0.0016 14 6 2.8035 -6.1693 -1.3626 15 6 3.0244 -7.6869 -1.5267 16 6 2.6623 -8.2494 -0.1734 17 7 3.7976 -8.1193 0.7435 18 6 4.8157 -9.0005 0.6846 19 8 4.7919 -9.9013 -0.1270 20 6 5.9832 -8.8670 1.6282 21 6 6.9910 -9.9849 1.3538 22 6 8.1766 -9.8490 2.3112 23 9 9.0985 -10.8709 2.0599 24 6 1.9748 -9.5725 0.0418 25 6 1.0519 -9.3310 1.2736 26 6 1.1402 -7.8012 1.5803 27 6 1.5248 -7.2367 0.2321 28 1 0.6836 -7.3297 -0.4549 29 1 -0.4850 0.8401 0.0004 30 1 0.3532 -2.3906 -0.0005 31 1 0.6172 -4.9204 -0.8913 32 1 0.6166 -4.9208 0.8887 33 1 2.1207 -5.8050 -2.1301 34 1 3.7544 -5.6403 -1.4263 35 1 4.0694 -7.8894 -1.7615 36 1 2.3693 -8.0893 -2.2994 37 1 3.8164 -7.3990 1.3929 38 1 5.6296 -8.9414 2.6565 39 1 6.4629 -7.8999 1.4780 40 1 7.3446 -9.9109 0.3254 41 1 6.5110 -10.9519 1.5042 42 1 7.8233 -9.9228 3.3397 43 1 8.6565 -8.8820 2.1604 44 1 1.3814 -9.8402 -0.8325 45 1 2.7060 -10.3508 0.2601 46 1 0.0252 -9.6077 1.0340 47 1 1.4066 -9.9078 2.1278 48 1 0.1750 -7.4124 1.9049 49 1 1.9107 -7.5964 2.3235 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571504021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:09 Heat of formation + Delta-G solvation = -110.977433 kcal Electronic energy + Delta-G solvation = -30715.556660 eV Core-core repulsion = 26398.895843 eV Total energy + Delta-G solvation = -4316.660817 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -47.82957 -41.42228 -39.05056 -37.98959 -35.33652 -34.17536 -33.86161 -33.51783 -31.53196 -31.10946 -28.46533 -27.73850 -26.42381 -26.00541 -24.10355 -22.66865 -21.45227 -20.87061 -20.07247 -19.37570 -18.94748 -17.87236 -17.34995 -16.76504 -16.56117 -15.97358 -15.82590 -15.56643 -15.39879 -15.05308 -14.82126 -14.79675 -14.40601 -14.10884 -13.91833 -13.73677 -13.38875 -13.31429 -12.96235 -12.49422 -12.34366 -12.18394 -12.10324 -11.82130 -11.70702 -11.56619 -11.46859 -11.41334 -11.26174 -11.12998 -11.03559 -10.91514 -10.78617 -10.61718 -10.41747 -10.30144 -10.22303 -9.64585 -9.51860 -9.01946 -8.56890 -8.08982 -7.97903 -6.43886 -3.84662 2.64303 3.08809 3.15608 3.24429 3.29926 3.69159 3.88843 4.02313 4.21249 4.38348 4.48512 4.48932 4.58657 4.76100 4.79933 4.93186 4.99329 5.00433 5.04124 5.09175 5.18077 5.23745 5.27868 5.30330 5.33437 5.44965 5.54200 5.63807 5.66342 5.70317 5.72231 5.75268 5.83714 5.89051 5.94111 5.96402 6.00899 6.11390 6.24954 6.25707 6.34126 6.62960 6.96025 7.20171 7.52805 7.60513 8.03895 8.26583 8.59701 9.16216 9.52573 10.04426 10.73942 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.012418 B = 0.002565 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.250817 B =10911.976800 C =12485.359471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.566 5.566 10 C 0.446 3.554 11 O -0.577 6.577 12 C 0.034 3.966 13 N -0.471 5.471 14 C 0.045 3.955 15 C -0.124 4.124 16 C 0.169 3.831 17 N -0.700 5.700 18 C 0.515 3.485 19 O -0.547 6.547 20 C -0.142 4.142 21 C -0.136 4.136 22 C 0.060 3.940 23 F -0.220 7.220 24 C -0.119 4.119 25 C -0.117 4.117 26 C -0.103 4.103 27 C 0.036 3.964 28 H 0.055 0.945 29 H 0.271 0.729 30 H 0.391 0.609 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.409 0.591 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.069 0.931 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.474 -19.070 3.960 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.203 5.203 10 C 0.231 3.769 11 O -0.460 6.460 12 C -0.098 4.098 13 N -0.195 5.195 14 C -0.082 4.082 15 C -0.163 4.163 16 C 0.082 3.918 17 N -0.353 5.353 18 C 0.301 3.699 19 O -0.425 6.425 20 C -0.182 4.182 21 C -0.174 4.174 22 C 0.005 3.995 23 F -0.201 7.201 24 C -0.157 4.157 25 C -0.155 4.155 26 C -0.141 4.141 27 C -0.074 4.074 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.224 0.776 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.246 0.754 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.553 -19.402 3.794 20.287 hybrid contribution -1.007 1.307 -0.363 1.689 sum 3.546 -18.095 3.431 18.756 Atomic orbital electron populations 1.69608 1.05931 1.28128 1.50738 1.25253 0.95627 0.99697 0.97405 0.85871 0.79247 0.80879 0.78374 1.20451 1.20936 1.19417 1.19675 0.93303 0.82208 1.47533 0.87975 1.41869 1.09150 1.04613 1.64711 1.19686 0.88400 0.84405 0.84418 1.90509 1.13598 1.86989 1.54904 1.22121 0.94054 0.91881 1.01706 1.64200 1.27917 1.00373 1.26964 1.23420 1.01501 0.94632 0.88646 1.21950 1.02973 0.95339 0.96032 1.20842 0.86102 0.95102 0.89749 1.45958 1.19707 1.31365 1.38237 1.20460 0.83344 0.81628 0.84449 1.90673 1.79296 1.33831 1.38736 1.21558 0.95143 1.01269 1.00210 1.21876 0.94857 0.99737 1.00916 1.22028 0.88347 0.88917 1.00178 1.92768 1.68612 1.62774 1.95940 1.21884 0.98598 0.96756 0.98478 1.22853 0.99556 0.95343 0.97777 1.21807 1.01834 0.94564 0.95941 1.22955 0.95620 0.90560 0.98292 0.92747 0.91898 0.77574 0.93038 0.89407 0.93409 0.88902 0.90437 0.90775 0.75387 0.88699 0.88303 0.90003 0.90126 0.90756 0.90602 0.90902 0.89517 0.91508 0.91572 0.91183 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.77 29.55 -169.99 -5.02 15.74 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 8 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 9 N -0.57 -13.97 5.29 -10.96 -0.06 -14.03 16 10 C 0.45 10.09 7.65 -10.99 -0.08 10.00 16 11 O -0.58 -14.91 15.19 5.55 0.08 -14.83 16 12 C 0.03 0.57 5.29 -4.97 -0.03 0.54 16 13 N -0.47 -7.07 4.35 -224.36 -0.97 -8.04 16 14 C 0.04 0.67 5.99 -1.35 -0.01 0.66 16 15 C -0.12 -1.56 6.21 -27.10 -0.17 -1.73 16 16 C 0.17 1.95 0.52 -131.50 -0.07 1.89 16 17 N -0.70 -7.81 4.20 -47.31 -0.20 -8.01 16 18 C 0.51 5.83 7.09 -10.98 -0.08 5.75 16 19 O -0.55 -7.85 14.13 5.56 0.08 -7.77 16 20 C -0.14 -1.13 5.70 -27.88 -0.16 -1.29 16 21 C -0.14 -1.16 4.96 -26.73 -0.13 -1.29 16 22 C 0.06 0.44 7.55 37.16 0.28 0.72 16 23 F -0.22 -2.30 17.36 2.25 0.04 -2.26 16 24 C -0.12 -1.24 6.04 -26.41 -0.16 -1.40 16 25 C -0.12 -1.03 6.92 -23.48 -0.16 -1.19 16 26 C -0.10 -1.03 6.45 -25.91 -0.17 -1.19 16 27 C 0.04 0.43 1.85 -67.42 -0.12 0.30 16 28 H 0.05 0.64 8.06 -51.93 -0.42 0.22 16 29 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 31 H 0.05 0.80 7.66 -51.93 -0.40 0.40 16 32 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 33 H 0.05 0.71 7.53 -51.93 -0.39 0.32 16 34 H 0.09 1.62 7.77 -51.93 -0.40 1.21 16 35 H 0.08 1.06 7.74 -51.93 -0.40 0.66 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.41 4.54 7.48 -40.82 -0.31 4.24 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 41 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.09 1.04 6.07 -51.93 -0.32 0.72 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 49 H 0.08 0.76 7.22 -51.93 -0.37 0.39 16 LS Contribution 392.27 15.07 5.91 5.91 Total: -1.00 -31.92 392.27 -8.62 -40.54 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -7.91 Total: 12.28 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -1.30 Total: 3.97 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.51 Total: -53.59 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: 0.16 Total: -22.59 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.92 -8.62 -40.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571504021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.439 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds