Wall clock time and date at job start Sat Apr 11 2020 06:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48496 * 109.47162 * 240.00029 * 3 2 1 5 5 H 1.48499 * 109.47439 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47051 * 119.99833 * 3 2 1 7 7 C 1.37878 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99817 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.49969 * 299.93793 * 9 7 2 11 11 C 1.53046 * 109.49623 * 59.99951 * 9 7 2 12 12 C 1.53046 * 109.53579 * 181.31259 * 11 9 7 13 13 C 1.53187 * 109.31363 * 298.63645 * 12 11 9 14 14 N 1.46928 * 108.77625 * 54.63376 * 13 12 11 15 15 C 1.34775 * 120.62932 * 126.41524 * 14 13 12 16 16 O 1.21288 * 120.00275 * 179.97438 * 15 14 13 17 17 C 1.50700 * 120.00217 * 359.97291 * 15 14 13 18 18 H 1.08998 * 109.47519 * 320.00525 * 17 15 14 19 19 N 1.46901 * 109.47576 * 200.00452 * 17 15 14 20 20 C 1.53005 * 109.46869 * 80.00625 * 17 15 14 21 21 C 1.50706 * 109.46943 * 185.00390 * 20 17 15 22 22 C 1.34233 * 126.49484 * 265.02236 * 21 20 17 23 23 N 1.36834 * 109.92795 * 180.02562 * 22 21 20 24 24 H 0.96996 * 125.06550 * 179.97438 * 23 22 21 25 25 C 1.37685 * 109.87061 * 0.02562 * 23 22 21 26 26 C 1.39130 * 133.50206 * 180.02562 * 25 23 22 27 27 C 1.37754 * 119.77785 * 179.97438 * 26 25 23 28 28 C 1.38835 * 120.66412 * 0.02562 * 27 26 25 29 29 C 1.36623 * 120.52794 * 359.97438 * 28 27 26 30 30 C 1.39631 * 119.76689 * 359.69650 * 29 28 27 31 31 C 1.46921 * 118.73936 * 306.39044 * 14 13 12 32 32 H 0.97001 * 119.99878 * 359.97438 * 1 2 3 33 33 H 1.08993 * 109.45866 * 301.33434 * 11 9 7 34 34 H 1.09000 * 109.45949 * 61.29770 * 11 9 7 35 35 H 1.09001 * 109.49519 * 58.58791 * 12 11 9 36 36 H 1.08996 * 109.49601 * 178.68448 * 12 11 9 37 37 H 1.09000 * 109.59097 * 294.84726 * 13 12 11 38 38 H 1.08999 * 109.58764 * 174.41759 * 13 12 11 39 39 H 1.00904 * 110.99873 * 300.00610 * 19 17 15 40 40 H 1.00897 * 111.00179 * 63.94912 * 19 17 15 41 41 H 1.09007 * 109.46550 * 304.99771 * 20 17 15 42 42 H 1.08993 * 109.47372 * 65.00026 * 20 17 15 43 43 H 1.08002 * 125.04167 * 359.97438 * 22 21 20 44 44 H 1.07997 * 120.11503 * 359.97438 * 26 25 23 45 45 H 1.08001 * 119.66562 * 179.97438 * 27 26 25 46 46 H 1.08001 * 119.73309 * 180.02562 * 28 27 26 47 47 H 1.07998 * 120.11683 * 180.02562 * 29 28 27 48 48 H 1.08996 * 109.58905 * 293.82203 * 31 14 13 49 49 H 1.09008 * 109.58585 * 173.39403 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6247 -2.5584 0.8884 11 6 0.3714 -2.5799 -1.2515 12 6 -0.4190 -3.8904 -1.2372 13 6 0.5570 -5.0710 -1.2557 14 7 1.4998 -4.9227 -0.1386 15 6 1.6772 -5.9225 0.7476 16 8 2.4588 -5.7880 1.6653 17 6 0.9043 -7.2076 0.5984 18 1 -0.1184 -6.9835 0.2954 19 7 0.8893 -7.9220 1.8819 20 6 1.5710 -8.0831 -0.4647 21 6 0.7315 -9.3119 -0.7021 22 6 0.8917 -10.5123 -0.1231 23 7 -0.0572 -11.3833 -0.5850 24 1 -0.1431 -12.3101 -0.3120 25 6 -0.8714 -10.7484 -1.4959 26 6 -1.9665 -11.1579 -2.2501 27 6 -2.5869 -10.2650 -3.0961 28 6 -2.1302 -8.9585 -3.2051 29 6 -1.0565 -8.5353 -2.4738 30 6 -0.4169 -9.4217 -1.6049 31 6 2.2459 -3.6640 -0.0063 32 1 -0.4850 0.8401 0.0004 33 1 -0.3211 -1.7383 -1.2632 34 1 1.0003 -2.5449 -2.1411 35 1 -1.0295 -3.9372 -0.3354 36 1 -1.0626 -3.9367 -2.1156 37 1 1.1050 -5.0774 -2.1979 38 1 0.0042 -6.0039 -1.1458 39 1 1.8265 -8.1413 2.1846 40 1 0.3971 -7.3917 2.5851 41 1 1.6622 -7.5203 -1.3938 42 1 2.5617 -8.3806 -0.1214 43 1 1.6568 -10.7551 0.5995 44 1 -2.3290 -12.1722 -2.1727 45 1 -3.4366 -10.5849 -3.6810 46 1 -2.6282 -8.2709 -3.8727 47 1 -0.7071 -7.5174 -2.5634 48 1 2.9316 -3.5555 -0.8466 49 1 2.8075 -3.6685 0.9280 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580047345.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:22 Heat of formation + Delta-G solvation = 12.269508 kcal Electronic energy + Delta-G solvation = -29993.819592 eV Core-core repulsion = 26113.272388 eV Total energy + Delta-G solvation = -3880.547204 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.35687 -39.86430 -37.11364 -36.87957 -35.24470 -33.45964 -32.19705 -31.35826 -30.27299 -29.93226 -29.28990 -27.55013 -25.23228 -24.98562 -22.95691 -22.82595 -21.82781 -21.68422 -19.80939 -19.40235 -18.37019 -17.83914 -17.06891 -16.45816 -16.28832 -15.86546 -15.62413 -15.33651 -14.70444 -14.52925 -14.23395 -14.19808 -13.95940 -13.71224 -13.58583 -13.36363 -13.01998 -12.75990 -12.67218 -12.26637 -12.18320 -12.02866 -11.99446 -11.77453 -11.55154 -11.27283 -10.96667 -10.86770 -10.82699 -10.76166 -10.31928 -9.96430 -9.91600 -9.73902 -9.61525 -9.44793 -8.89869 -8.53443 -8.39566 -8.27350 -7.91927 -7.67456 -6.02866 -4.10223 1.06739 1.56603 2.59532 3.00605 3.05305 3.30581 3.35097 3.37615 3.55990 3.85727 4.41595 4.52096 4.62498 4.74673 4.78669 4.96972 5.03956 5.14217 5.20718 5.25925 5.28755 5.33257 5.46086 5.52592 5.61912 5.67125 5.74683 5.80504 5.85632 5.94485 6.09597 6.11722 6.32318 6.38002 6.41133 6.47354 6.55284 6.64678 6.64804 6.74222 6.78843 6.94332 7.06093 7.10763 7.15664 7.32393 7.43360 7.44973 7.67678 7.90091 7.99646 8.06554 8.35900 8.58579 8.93152 9.54705 11.02511 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018188 B = 0.002712 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.077907 B =10321.603576 C =11504.081501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.041 3.959 10 H 0.028 0.972 11 C -0.112 4.112 12 C -0.135 4.135 13 C 0.105 3.895 14 N -0.596 5.596 15 C 0.474 3.526 16 O -0.559 6.559 17 C 0.080 3.920 18 H 0.102 0.898 19 N -0.815 5.815 20 C -0.030 4.030 21 C -0.150 4.150 22 C 0.069 3.931 23 N -0.598 5.598 24 H 0.413 0.587 25 C 0.094 3.906 26 C -0.134 4.134 27 C -0.102 4.102 28 C -0.148 4.148 29 C -0.071 4.071 30 C -0.099 4.099 31 C 0.114 3.886 32 H 0.261 0.739 33 H 0.095 0.905 34 H 0.036 0.964 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.344 0.656 40 H 0.343 0.657 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.167 0.833 44 H 0.115 0.885 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.055 0.945 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.740 -23.295 -5.176 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.022 3.978 10 H 0.046 0.954 11 C -0.150 4.150 12 C -0.174 4.174 13 C -0.018 4.018 14 N -0.328 5.328 15 C 0.260 3.740 16 O -0.438 6.438 17 C -0.036 4.036 18 H 0.119 0.881 19 N -0.343 5.343 20 C -0.069 4.069 21 C -0.157 4.157 22 C -0.057 4.057 23 N -0.201 5.201 24 H 0.249 0.751 25 C -0.013 4.013 26 C -0.155 4.155 27 C -0.122 4.122 28 C -0.167 4.167 29 C -0.089 4.089 30 C -0.104 4.104 31 C -0.007 4.007 32 H 0.071 0.929 33 H 0.114 0.886 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.184 0.816 44 H 0.133 0.867 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.073 0.927 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.868 -23.781 -5.025 24.612 hybrid contribution 0.800 1.412 0.481 1.692 sum -3.068 -22.369 -4.544 23.032 Atomic orbital electron populations 1.69860 1.05887 1.26603 1.50392 1.24933 0.94858 0.99065 0.94917 0.86643 0.79598 0.83008 0.78671 1.20239 1.21293 1.20251 1.21039 0.92937 0.90328 1.51093 0.92579 1.18949 0.92900 0.91143 0.94768 0.95410 1.21630 0.99451 0.95403 0.98542 1.22008 0.97645 0.96650 1.01053 1.21869 0.91441 0.99231 0.89266 1.48386 1.41536 1.15937 1.26897 1.21930 0.83523 0.86381 0.82155 1.90652 1.38138 1.82014 1.33033 1.21560 1.00109 0.89273 0.92623 0.88054 1.59171 1.22786 1.47748 1.04616 1.19819 0.97060 0.92539 0.97508 1.19858 0.99191 0.94803 1.01834 1.21512 0.94586 0.89560 1.00027 1.41706 1.27587 1.12800 1.37960 0.75097 1.18230 0.95161 0.92757 0.95143 1.19985 0.96028 0.99990 0.99451 1.20775 0.99565 0.93466 0.98365 1.20633 0.98187 0.96223 1.01684 1.20349 0.95088 0.98811 0.94673 1.19102 0.97879 0.93133 1.00239 1.22007 0.95157 0.82159 1.01353 0.92902 0.88626 0.94564 0.92419 0.92332 0.91753 0.90817 0.84254 0.84443 0.90331 0.90789 0.81587 0.86667 0.86075 0.86088 0.86042 0.92716 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.89 11.31 55.43 0.63 -24.26 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -13.93 8.56 -34.44 -0.29 -14.22 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.04 1.01 2.25 -91.65 -0.21 0.81 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 11 C -0.11 -2.49 4.96 -26.68 -0.13 -2.62 16 12 C -0.14 -2.36 6.08 -26.61 -0.16 -2.53 16 13 C 0.10 1.59 5.58 -3.71 -0.02 1.56 16 14 N -0.60 -10.72 2.97 -172.77 -0.51 -11.24 16 15 C 0.47 8.21 6.94 -10.99 -0.08 8.14 16 16 O -0.56 -11.51 15.66 5.55 0.09 -11.43 16 17 C 0.08 1.06 2.29 -68.86 -0.16 0.90 16 18 H 0.10 1.37 6.54 -51.93 -0.34 1.03 16 19 N -0.82 -9.88 8.70 -5.65 -0.05 -9.93 16 20 C -0.03 -0.35 5.14 -27.88 -0.14 -0.49 16 21 C -0.15 -1.67 5.30 -102.71 -0.54 -2.21 16 22 C 0.07 0.64 11.73 -16.73 -0.20 0.45 16 23 N -0.60 -5.11 6.07 -10.65 -0.06 -5.18 16 24 H 0.41 2.25 8.96 -40.82 -0.37 1.89 16 25 C 0.09 1.00 7.28 -83.99 -0.61 0.39 16 26 C -0.13 -1.26 10.08 -39.43 -0.40 -1.65 16 27 C -0.10 -0.94 10.01 -39.54 -0.40 -1.34 16 28 C -0.15 -1.47 9.97 -39.94 -0.40 -1.87 16 29 C -0.07 -0.79 10.05 -39.65 -0.40 -1.18 16 30 C -0.10 -1.16 6.35 -105.14 -0.67 -1.83 16 31 C 0.11 2.46 5.66 -3.71 -0.02 2.44 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 33 H 0.10 2.41 6.04 -51.93 -0.31 2.10 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.93 4.40 -51.93 -0.23 0.70 16 39 H 0.34 4.11 8.58 -39.29 -0.34 3.77 16 40 H 0.34 4.28 9.06 -39.29 -0.36 3.92 16 41 H 0.08 0.91 7.20 -51.93 -0.37 0.53 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 46 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 47 H 0.12 1.23 7.27 -52.49 -0.38 0.85 16 48 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.08 1.80 7.01 -51.92 -0.36 1.43 16 LS Contribution 389.46 15.07 5.87 5.87 Total: -1.00 -31.47 389.46 -11.24 -42.71 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -7.25 Total: 11.01 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -4.92 Total: -13.63 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.00 Total: -50.60 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.47 -11.24 -42.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047345.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.975 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds