Wall clock time and date at job start Sat Apr 11 2020 06:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48496 * 109.47162 * 240.00029 * 3 2 1 5 5 H 1.48499 * 109.47439 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47051 * 119.99833 * 3 2 1 7 7 C 1.37878 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99817 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.49969 * 299.93793 * 9 7 2 11 11 C 1.53046 * 109.49623 * 59.99951 * 9 7 2 12 12 C 1.53046 * 109.53579 * 181.31259 * 11 9 7 13 13 C 1.53187 * 109.31363 * 298.63645 * 12 11 9 14 14 N 1.46928 * 108.77625 * 54.63376 * 13 12 11 15 15 C 1.34775 * 120.62932 * 126.41524 * 14 13 12 16 16 O 1.21288 * 120.00275 * 179.97438 * 15 14 13 17 17 C 1.50700 * 120.00217 * 359.97291 * 15 14 13 18 18 H 1.08998 * 109.47519 * 320.00525 * 17 15 14 19 19 N 1.46901 * 109.47576 * 200.00452 * 17 15 14 20 20 C 1.53005 * 109.46869 * 80.00625 * 17 15 14 21 21 C 1.50706 * 109.46943 * 185.00390 * 20 17 15 22 22 C 1.34233 * 126.49484 * 265.02236 * 21 20 17 23 23 N 1.36834 * 109.92795 * 180.02562 * 22 21 20 24 24 H 0.96996 * 125.06550 * 179.97438 * 23 22 21 25 25 C 1.37685 * 109.87061 * 0.02562 * 23 22 21 26 26 C 1.39130 * 133.50206 * 180.02562 * 25 23 22 27 27 C 1.37754 * 119.77785 * 179.97438 * 26 25 23 28 28 C 1.38835 * 120.66412 * 0.02562 * 27 26 25 29 29 C 1.36623 * 120.52794 * 359.97438 * 28 27 26 30 30 C 1.39631 * 119.76689 * 359.69650 * 29 28 27 31 31 C 1.46921 * 118.73936 * 306.39044 * 14 13 12 32 32 H 0.97001 * 119.99878 * 359.97438 * 1 2 3 33 33 H 1.08993 * 109.45866 * 301.33434 * 11 9 7 34 34 H 1.09000 * 109.45949 * 61.29770 * 11 9 7 35 35 H 1.09001 * 109.49519 * 58.58791 * 12 11 9 36 36 H 1.08996 * 109.49601 * 178.68448 * 12 11 9 37 37 H 1.09000 * 109.59097 * 294.84726 * 13 12 11 38 38 H 1.08999 * 109.58764 * 174.41759 * 13 12 11 39 39 H 1.00904 * 110.99873 * 300.00610 * 19 17 15 40 40 H 1.00897 * 111.00179 * 63.94912 * 19 17 15 41 41 H 1.09007 * 109.46550 * 304.99771 * 20 17 15 42 42 H 1.08993 * 109.47372 * 65.00026 * 20 17 15 43 43 H 1.08002 * 125.04167 * 359.97438 * 22 21 20 44 44 H 1.07997 * 120.11503 * 359.97438 * 26 25 23 45 45 H 1.08001 * 119.66562 * 179.97438 * 27 26 25 46 46 H 1.08001 * 119.73309 * 180.02562 * 28 27 26 47 47 H 1.07998 * 120.11683 * 180.02562 * 29 28 27 48 48 H 1.08996 * 109.58905 * 293.82203 * 31 14 13 49 49 H 1.09008 * 109.58585 * 173.39403 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6247 -2.5584 0.8884 11 6 0.3714 -2.5799 -1.2515 12 6 -0.4190 -3.8904 -1.2372 13 6 0.5570 -5.0710 -1.2557 14 7 1.4998 -4.9227 -0.1386 15 6 1.6772 -5.9225 0.7476 16 8 2.4588 -5.7880 1.6653 17 6 0.9043 -7.2076 0.5984 18 1 -0.1184 -6.9835 0.2954 19 7 0.8893 -7.9220 1.8819 20 6 1.5710 -8.0831 -0.4647 21 6 0.7315 -9.3119 -0.7021 22 6 0.8917 -10.5123 -0.1231 23 7 -0.0572 -11.3833 -0.5850 24 1 -0.1431 -12.3101 -0.3120 25 6 -0.8714 -10.7484 -1.4959 26 6 -1.9665 -11.1579 -2.2501 27 6 -2.5869 -10.2650 -3.0961 28 6 -2.1302 -8.9585 -3.2051 29 6 -1.0565 -8.5353 -2.4738 30 6 -0.4169 -9.4217 -1.6049 31 6 2.2459 -3.6640 -0.0063 32 1 -0.4850 0.8401 0.0004 33 1 -0.3211 -1.7383 -1.2632 34 1 1.0003 -2.5449 -2.1411 35 1 -1.0295 -3.9372 -0.3354 36 1 -1.0626 -3.9367 -2.1156 37 1 1.1050 -5.0774 -2.1979 38 1 0.0042 -6.0039 -1.1458 39 1 1.8265 -8.1413 2.1846 40 1 0.3971 -7.3917 2.5851 41 1 1.6622 -7.5203 -1.3938 42 1 2.5617 -8.3806 -0.1214 43 1 1.6568 -10.7551 0.5995 44 1 -2.3290 -12.1722 -2.1727 45 1 -3.4366 -10.5849 -3.6810 46 1 -2.6282 -8.2709 -3.8727 47 1 -0.7071 -7.5174 -2.5634 48 1 2.9316 -3.5555 -0.8466 49 1 2.8075 -3.6685 0.9280 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580047345.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:20 Heat of formation + Delta-G solvation = -7.138177 kcal Electronic energy + Delta-G solvation = -29994.661172 eV Core-core repulsion = 26113.272388 eV Total energy + Delta-G solvation = -3881.388784 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.08921 -41.25141 -38.57660 -37.68597 -36.35891 -35.31038 -33.04751 -33.00120 -31.99912 -30.71309 -30.00149 -28.55493 -27.02496 -26.43694 -24.18523 -23.60272 -23.31130 -22.52885 -21.34547 -20.25361 -19.82092 -18.63033 -18.55730 -18.06962 -17.26131 -16.98738 -16.78765 -16.56366 -16.18405 -15.69849 -15.32759 -15.17272 -15.06090 -14.95566 -14.77233 -14.60718 -14.47890 -14.18777 -13.82340 -13.60656 -13.49576 -13.27979 -12.89325 -12.86112 -12.69762 -12.63676 -12.55906 -12.37819 -12.11803 -11.91593 -11.84994 -11.65419 -11.53792 -11.29918 -11.09519 -10.80946 -10.44104 -10.37743 -9.71642 -9.49877 -8.99049 -8.39773 -8.11203 -6.26750 0.35980 0.84183 1.40758 1.42059 1.49454 1.55329 1.91316 2.16232 2.41271 2.43561 3.12052 3.15030 3.44582 3.65506 3.92723 3.96004 4.08594 4.17657 4.22891 4.27331 4.30235 4.36479 4.44401 4.52523 4.57262 4.61118 4.61820 4.77523 4.82113 4.85650 4.92805 4.96719 5.01408 5.09002 5.11319 5.17187 5.27236 5.37916 5.46872 5.55195 5.60373 5.70977 5.84479 5.91929 5.92584 6.00033 6.02442 6.13522 6.33703 6.39360 6.43429 6.56139 6.82593 6.85997 7.17126 7.41420 8.92100 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018188 B = 0.002712 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.077907 B =10321.603576 C =11504.081501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.017 3.983 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.052 0.948 9 C 0.043 3.957 10 H -0.016 1.016 11 C -0.105 4.105 12 C -0.128 4.128 13 C 0.109 3.891 14 N -0.600 5.600 15 C 0.470 3.530 16 O -0.596 6.596 17 C 0.097 3.903 18 H 0.104 0.896 19 N -0.804 5.804 20 C -0.021 4.021 21 C -0.174 4.174 22 C 0.078 3.922 23 N -0.588 5.588 24 H 0.427 0.573 25 C 0.076 3.924 26 C -0.137 4.137 27 C -0.110 4.110 28 C -0.155 4.155 29 C -0.092 4.092 30 C -0.121 4.121 31 C 0.128 3.872 32 H 0.262 0.738 33 H 0.062 0.938 34 H 0.038 0.962 35 H 0.042 0.958 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.347 0.653 40 H 0.341 0.659 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.189 0.811 44 H 0.137 0.863 45 H 0.144 0.856 46 H 0.135 0.865 47 H 0.126 0.874 48 H 0.061 0.939 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.139 -25.430 -6.402 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.780 3.220 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.202 1.202 7 C -0.578 4.578 8 H 0.070 0.930 9 C 0.024 3.976 10 H 0.002 0.998 11 C -0.143 4.143 12 C -0.166 4.166 13 C -0.013 4.013 14 N -0.331 5.331 15 C 0.258 3.742 16 O -0.478 6.478 17 C -0.019 4.019 18 H 0.121 0.879 19 N -0.332 5.332 20 C -0.060 4.060 21 C -0.181 4.181 22 C -0.048 4.048 23 N -0.192 5.192 24 H 0.266 0.734 25 C -0.031 4.031 26 C -0.158 4.158 27 C -0.129 4.129 28 C -0.174 4.174 29 C -0.110 4.110 30 C -0.126 4.126 31 C 0.005 3.995 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.124 0.876 39 H 0.161 0.839 40 H 0.153 0.847 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.206 0.794 44 H 0.155 0.845 45 H 0.162 0.838 46 H 0.153 0.847 47 H 0.143 0.857 48 H 0.079 0.921 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.286 -25.963 -6.265 27.049 hybrid contribution 0.891 2.027 0.899 2.390 sum -3.395 -23.935 -5.366 24.763 Atomic orbital electron populations 1.70001 1.07084 1.27287 1.50796 1.25687 0.95692 1.02256 0.94554 0.85672 0.78456 0.79076 0.78821 1.19230 1.20755 1.20195 1.21415 0.93053 0.91954 1.51384 0.92999 1.18848 0.93096 0.91642 0.94025 0.99815 1.21420 0.98761 0.96973 0.97165 1.21915 0.97813 0.94983 1.01853 1.22042 0.90761 0.99417 0.89069 1.48448 1.41797 1.14792 1.28072 1.22846 0.83061 0.87300 0.80992 1.90629 1.39886 1.82827 1.34446 1.21551 0.99348 0.87252 0.93793 0.87856 1.59200 1.22869 1.46835 1.04271 1.19711 0.97093 0.92541 0.96640 1.19811 0.99858 0.95226 1.03234 1.21880 0.94484 0.89136 0.99337 1.41721 1.26816 1.13445 1.37175 0.73374 1.18490 0.95902 0.92827 0.95923 1.20311 0.95508 1.01120 0.98858 1.21115 1.00153 0.93214 0.98447 1.20914 0.97923 0.96986 1.01568 1.20531 0.95884 0.99208 0.95416 1.19367 0.98430 0.93984 1.00821 1.21553 0.94552 0.83115 1.00262 0.92913 0.91934 0.94302 0.93922 0.89101 0.89686 0.87649 0.83926 0.84654 0.90277 0.90515 0.79372 0.84517 0.83842 0.84706 0.85656 0.92054 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.52 11.31 21.45 0.24 -52.28 16 2 C 0.02 0.96 5.30 84.65 0.45 1.41 16 3 Si 0.95 43.82 29.54 68.60 2.03 45.85 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.54 -30.11 8.56 25.60 0.22 -29.89 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 9 C 0.04 2.19 2.25 -11.46 -0.03 2.16 16 10 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 11 C -0.10 -4.73 4.96 30.63 0.15 -4.58 16 12 C -0.13 -4.34 6.08 30.67 0.19 -4.16 16 13 C 0.11 3.10 5.58 86.36 0.48 3.58 16 14 N -0.60 -21.49 2.97 -818.91 -2.43 -23.92 16 15 C 0.47 16.18 6.94 87.66 0.61 16.79 16 16 O -0.60 -24.95 15.66 -3.06 -0.05 -24.99 16 17 C 0.10 2.42 2.29 44.17 0.10 2.52 16 18 H 0.10 2.60 6.54 -2.39 -0.02 2.58 16 19 N -0.80 -18.46 8.70 -171.80 -1.49 -19.95 16 20 C -0.02 -0.45 5.14 29.85 0.15 -0.29 16 21 C -0.17 -3.52 5.30 -18.63 -0.10 -3.62 16 22 C 0.08 1.26 11.73 83.00 0.97 2.24 16 23 N -0.59 -8.56 6.07 -187.61 -1.14 -9.69 16 24 H 0.43 3.48 8.96 -92.71 -0.83 2.65 16 25 C 0.08 1.45 7.28 39.03 0.28 1.74 16 26 C -0.14 -2.25 10.08 22.37 0.23 -2.02 16 27 C -0.11 -1.76 10.01 22.30 0.22 -1.54 16 28 C -0.15 -2.77 9.97 22.03 0.22 -2.55 16 29 C -0.09 -1.88 10.05 22.23 0.22 -1.66 16 30 C -0.12 -2.64 6.35 -20.20 -0.13 -2.77 16 31 C 0.13 5.66 5.66 86.36 0.49 6.14 16 32 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 33 H 0.06 3.24 6.04 -2.39 -0.01 3.23 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.11 2.39 4.40 -2.39 -0.01 2.38 16 39 H 0.35 7.86 8.58 -89.69 -0.77 7.09 16 40 H 0.34 8.23 9.06 -89.70 -0.81 7.42 16 41 H 0.08 1.66 7.20 -2.38 -0.02 1.65 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 44 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 45 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 46 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 47 H 0.13 2.30 7.27 -2.91 -0.02 2.28 16 48 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 49 H 0.05 2.50 7.01 -2.38 -0.02 2.48 16 Total: -1.00 -70.77 389.46 0.48 -70.29 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: -1.41 Total: 31.21 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 4.74 Total: -16.50 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -4.82 Total: -105.85 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.05 Total: -24.99 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -70.77 0.48 -70.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047345.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.150 kcal (2) G-P(sol) polarization free energy of solvation -70.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds