Wall clock time and date at job start Sat Apr 11 2020 06:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46499 * 109.68107 * 289.43478 * 3 2 1 5 5 C 1.34772 * 119.99848 * 60.52034 * 4 3 2 6 6 O 1.21281 * 120.00275 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00029 * 179.97438 * 5 4 3 8 8 H 1.09000 * 109.47464 * 320.00686 * 7 5 4 9 9 N 1.46897 * 109.47420 * 200.00531 * 7 5 4 10 10 C 1.53002 * 109.47015 * 80.00332 * 7 5 4 11 11 C 1.53004 * 109.47346 * 184.99942 * 10 7 5 12 12 C 1.52998 * 109.47017 * 179.97438 * 11 10 7 13 13 C 1.50700 * 109.46947 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00243 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00396 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99708 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00483 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46775 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46858 * 119.99915 * 17 15 13 20 20 H 1.48498 * 109.46885 * 240.00563 * 17 15 13 21 21 C 1.53324 * 109.67608 * 168.88071 * 3 2 1 22 22 C 1.52726 * 108.40443 * 170.43380 * 21 3 2 23 23 C 1.50631 * 110.59953 * 51.06527 * 22 21 3 24 24 C 1.38914 * 117.75694 * 162.57517 * 23 22 21 25 25 C 1.37932 * 120.54006 * 179.65765 * 24 23 22 26 26 C 1.38261 * 119.77557 * 359.42610 * 25 24 23 27 27 C 1.37931 * 119.77139 * 0.72142 * 26 25 24 28 28 C 1.37664 * 122.55901 * 342.18638 * 23 22 21 29 29 C 1.50628 * 122.56631 * 0.86783 * 28 23 22 30 30 H 0.96996 * 120.00013 * 240.52357 * 4 3 2 31 31 H 1.00897 * 111.00415 * 176.04896 * 9 7 5 32 32 H 1.00906 * 110.99907 * 299.99956 * 9 7 5 33 33 H 1.08998 * 109.47195 * 305.00064 * 10 7 5 34 34 H 1.09001 * 109.47253 * 64.99893 * 10 7 5 35 35 H 1.08998 * 109.47073 * 300.00196 * 11 10 7 36 36 H 1.09001 * 109.46464 * 59.99858 * 11 10 7 37 37 H 1.08998 * 109.47464 * 300.00085 * 12 11 10 38 38 H 1.08995 * 109.46923 * 60.00276 * 12 11 10 39 39 H 0.96999 * 120.00040 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.67896 * 290.15485 * 21 3 2 41 41 H 1.08999 * 109.68420 * 50.70461 * 21 3 2 42 42 H 1.08998 * 109.25111 * 290.77833 * 22 21 3 43 43 H 1.09001 * 109.25294 * 171.35402 * 22 21 3 44 44 H 1.08002 * 119.72528 * 359.37093 * 24 23 22 45 45 H 1.08008 * 120.10775 * 179.73327 * 25 24 23 46 46 H 1.08004 * 120.11226 * 180.42747 * 26 25 24 47 47 H 1.07994 * 119.73081 * 179.68152 * 27 26 25 48 48 H 1.08994 * 109.26053 * 102.35404 * 29 28 23 49 49 H 1.08997 * 109.25730 * 221.79635 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.1016 -0.4581 1.3008 5 6 2.7883 -1.6919 1.7435 6 8 2.0981 -2.4226 1.0648 7 6 3.2965 -2.1640 3.0813 8 1 4.3250 -1.8300 3.2178 9 7 3.2472 -3.6312 3.1338 10 6 2.4201 -1.5841 4.1933 11 6 3.0081 -1.9604 5.5548 12 6 2.1320 -1.3800 6.6667 13 6 2.7116 -1.7501 8.0077 14 1 3.6147 -2.3399 8.0615 15 6 2.0890 -1.3357 9.1660 16 7 0.9890 -0.6179 9.1006 17 14 2.8078 -1.7939 10.8282 18 1 4.0391 -2.6000 10.6298 19 1 3.1406 -0.5580 11.5812 20 1 1.8148 -2.5885 11.5948 21 6 3.1236 1.4175 -0.2784 22 6 4.6315 1.4380 -0.0369 23 6 5.3036 0.3174 -0.7863 24 6 6.6763 0.4018 -0.9818 25 6 7.3511 -0.5957 -1.6542 26 6 6.6584 -1.6947 -2.1275 27 6 5.2949 -1.7789 -1.9371 28 6 4.6121 -0.7715 -1.2672 29 6 3.1229 -0.9243 -1.1010 30 1 3.6539 0.1261 1.8435 31 1 3.6426 -3.9757 3.9958 32 1 2.3034 -3.9660 3.0098 33 1 2.3855 -0.4987 4.1000 34 1 1.4113 -1.9883 4.1090 35 1 3.0427 -3.0459 5.6482 36 1 4.0169 -1.5562 5.6390 37 1 2.0979 -0.2946 6.5732 38 1 1.1232 -1.7839 6.5826 39 1 0.5507 -0.3267 9.9154 40 1 2.9141 1.6876 -1.3135 41 1 2.6349 2.1244 0.3920 42 1 4.8262 1.3247 1.0296 43 1 5.0370 2.3912 -0.3763 44 1 7.2188 1.2578 -0.6084 45 1 8.4178 -0.5208 -1.8061 46 1 7.1825 -2.4822 -2.6487 47 1 4.7537 -2.6351 -2.3116 48 1 2.6289 -0.6750 -2.0401 49 1 2.8946 -1.9572 -0.8385 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580050857.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:29 Heat of formation + Delta-G solvation = -3.437027 kcal Electronic energy + Delta-G solvation = -29483.049575 eV Core-core repulsion = 25601.821285 eV Total energy + Delta-G solvation = -3881.228291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.31245 -39.54213 -37.69766 -35.99564 -35.81847 -33.45701 -33.39196 -32.75615 -31.27673 -30.44426 -29.29631 -27.82552 -25.56807 -24.62292 -23.47112 -22.67398 -22.42787 -20.58349 -20.19898 -20.03365 -18.29699 -17.62969 -16.69281 -16.38858 -16.31049 -15.39112 -15.20140 -15.01346 -14.90851 -14.65131 -14.59716 -14.49003 -13.98868 -13.88159 -13.72250 -13.34600 -13.29958 -13.22966 -12.80385 -12.61490 -12.57046 -12.48693 -12.31579 -12.08184 -11.90231 -11.73816 -11.67478 -11.26136 -11.07337 -10.93321 -10.86607 -10.73790 -10.57887 -9.86399 -9.80557 -9.53858 -9.42617 -9.15673 -9.00643 -8.82613 -8.53021 -8.40469 -6.05235 -4.08405 1.09089 1.12261 2.23733 2.54230 2.56666 3.16719 3.27263 3.35076 3.38630 3.48254 3.50249 4.07575 4.20443 4.40843 4.48668 4.54914 4.60323 4.76284 4.77536 4.79326 4.86004 4.89209 5.15518 5.17197 5.17551 5.25554 5.30692 5.30798 5.40702 5.46337 5.51805 5.61419 5.70896 5.75778 5.86269 5.91218 6.08682 6.20802 6.22561 6.27189 6.35580 6.52719 6.69253 6.74591 6.98427 7.06605 7.29429 7.37793 7.55566 7.60177 7.72306 7.93716 8.08776 8.35341 8.99059 9.56388 11.05993 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013718 B = 0.002453 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.629127 B =11411.896205 C =12022.860788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C 0.202 3.798 3 C 0.286 3.714 4 N -0.719 5.719 5 C 0.529 3.471 6 O -0.521 6.521 7 C 0.078 3.922 8 H 0.102 0.898 9 N -0.829 5.829 10 C -0.148 4.148 11 C -0.108 4.108 12 C 0.022 3.978 13 C -0.522 4.522 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.892 3.108 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.119 4.119 22 C -0.079 4.079 23 C -0.080 4.080 24 C -0.117 4.117 25 C -0.122 4.122 26 C -0.119 4.119 27 C -0.114 4.114 28 C -0.062 4.062 29 C -0.092 4.092 30 H 0.410 0.590 31 H 0.353 0.647 32 H 0.349 0.651 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.015 0.985 38 H 0.014 0.986 39 H 0.260 0.740 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.091 0.909 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.717 4.250 -24.801 28.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.081 5.081 2 C -0.119 4.119 3 C 0.196 3.804 4 N -0.376 5.376 5 C 0.316 3.684 6 O -0.395 6.395 7 C -0.037 4.037 8 H 0.120 0.880 9 N -0.361 5.361 10 C -0.188 4.188 11 C -0.145 4.145 12 C -0.015 4.015 13 C -0.560 4.560 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.158 4.158 22 C -0.117 4.117 23 C -0.080 4.080 24 C -0.135 4.135 25 C -0.140 4.140 26 C -0.137 4.137 27 C -0.132 4.132 28 C -0.063 4.063 29 C -0.131 4.131 30 H 0.248 0.752 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.070 0.930 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.139 0.861 48 H 0.109 0.891 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.841 3.792 -25.809 28.249 hybrid contribution 0.357 0.182 2.166 2.203 sum 11.198 3.974 -23.643 26.461 Atomic orbital electron populations 1.81176 1.12674 1.07922 1.06301 1.29120 0.94847 0.93455 0.94431 1.17352 0.80541 0.96726 0.85809 1.46107 1.55037 1.17046 1.19413 1.20873 0.79177 0.80483 0.87876 1.90653 1.37060 1.54292 1.57507 1.21416 1.00937 0.90727 0.90624 0.88034 1.58689 1.28106 1.06037 1.43273 1.22430 0.99384 1.01367 0.95598 1.21645 0.99884 1.00080 0.92934 1.19081 0.94628 0.96076 0.91757 1.21274 1.10262 1.33405 0.91063 0.92607 1.25040 0.94951 0.95144 0.99366 1.69974 1.18421 1.36899 1.28116 0.86544 0.79165 0.78248 0.84103 1.19686 1.20986 1.21002 1.21882 0.96405 0.92910 1.04586 1.20462 0.93246 0.97491 1.00456 1.19495 0.93729 0.95433 0.99310 1.21113 0.93594 0.99316 0.99454 1.21068 0.99833 0.94417 0.98710 1.21068 0.94279 0.98157 1.00203 1.21130 0.94545 0.98380 0.99118 1.19320 0.94380 0.94203 0.98352 1.20923 0.92240 1.02607 0.97306 0.75248 0.83214 0.83722 0.91601 0.91791 0.93294 0.92959 0.96638 0.96748 0.93008 0.88714 0.89311 0.89898 0.89254 0.86043 0.86163 0.86121 0.86077 0.89063 0.87171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.34 18.54 42.15 0.78 -5.56 16 2 C 0.20 2.57 12.81 -20.76 -0.27 2.30 16 3 C 0.29 2.61 0.61 -134.57 -0.08 2.53 16 4 N -0.72 -6.99 4.52 -50.20 -0.23 -7.21 16 5 C 0.53 6.92 6.47 -10.99 -0.07 6.84 16 6 O -0.52 -8.37 13.46 5.56 0.07 -8.30 16 7 C 0.08 1.01 3.21 -68.87 -0.22 0.79 16 8 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 9 N -0.83 -11.11 8.94 -5.66 -0.05 -11.16 16 10 C -0.15 -2.30 4.84 -26.73 -0.13 -2.42 16 11 C -0.11 -2.01 4.92 -26.73 -0.13 -2.14 16 12 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 13 C -0.52 -14.42 9.11 -34.44 -0.31 -14.74 16 14 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 17 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C -0.12 -0.69 4.98 -26.70 -0.13 -0.82 16 22 C -0.08 -0.39 5.24 -28.06 -0.15 -0.54 16 23 C -0.08 -0.57 5.66 -104.62 -0.59 -1.16 16 24 C -0.12 -0.80 9.61 -39.44 -0.38 -1.18 16 25 C -0.12 -0.87 10.05 -39.69 -0.40 -1.27 16 26 C -0.12 -0.92 10.05 -39.69 -0.40 -1.31 16 27 C -0.11 -0.97 9.61 -39.44 -0.38 -1.35 16 28 C -0.06 -0.53 5.60 -104.62 -0.59 -1.11 16 29 C -0.09 -0.84 4.32 -28.05 -0.12 -0.96 16 30 H 0.41 3.00 6.80 -40.82 -0.28 2.72 16 31 H 0.35 4.47 7.55 -39.29 -0.30 4.17 16 32 H 0.35 4.95 8.58 -39.29 -0.34 4.61 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.88 6.87 -51.93 -0.36 0.53 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.09 0.45 8.10 -51.93 -0.42 0.03 16 41 H 0.09 0.45 8.12 -51.93 -0.42 0.03 16 42 H 0.08 0.35 6.63 -51.93 -0.34 0.01 16 43 H 0.09 0.30 8.13 -51.93 -0.42 -0.12 16 44 H 0.12 0.60 8.05 -52.49 -0.42 0.18 16 45 H 0.12 0.64 8.06 -52.48 -0.42 0.21 16 46 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 47 H 0.12 0.95 8.05 -52.49 -0.42 0.53 16 48 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 49 H 0.11 1.29 5.95 -51.93 -0.31 0.98 16 LS Contribution 399.06 15.07 6.01 6.01 Total: -1.00 -34.55 399.06 -9.65 -44.20 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -7.38 Total: 6.34 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -4.58 Total: -14.64 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 1.24 Total: -49.95 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.07 Total: -8.30 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.55 -9.65 -44.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050857.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.759 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds