Wall clock time and date at job start Sat Apr 11 2020 06:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46499 * 109.68107 * 289.43478 * 3 2 1 5 5 C 1.34772 * 119.99848 * 60.52034 * 4 3 2 6 6 O 1.21281 * 120.00275 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00029 * 179.97438 * 5 4 3 8 8 H 1.09000 * 109.47464 * 320.00686 * 7 5 4 9 9 N 1.46897 * 109.47420 * 200.00531 * 7 5 4 10 10 C 1.53002 * 109.47015 * 80.00332 * 7 5 4 11 11 C 1.53004 * 109.47346 * 184.99942 * 10 7 5 12 12 C 1.52998 * 109.47017 * 179.97438 * 11 10 7 13 13 C 1.50700 * 109.46947 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00243 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00396 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99708 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00483 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46775 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46858 * 119.99915 * 17 15 13 20 20 H 1.48498 * 109.46885 * 240.00563 * 17 15 13 21 21 C 1.53324 * 109.67608 * 168.88071 * 3 2 1 22 22 C 1.52726 * 108.40443 * 170.43380 * 21 3 2 23 23 C 1.50631 * 110.59953 * 51.06527 * 22 21 3 24 24 C 1.38914 * 117.75694 * 162.57517 * 23 22 21 25 25 C 1.37932 * 120.54006 * 179.65765 * 24 23 22 26 26 C 1.38261 * 119.77557 * 359.42610 * 25 24 23 27 27 C 1.37931 * 119.77139 * 0.72142 * 26 25 24 28 28 C 1.37664 * 122.55901 * 342.18638 * 23 22 21 29 29 C 1.50628 * 122.56631 * 0.86783 * 28 23 22 30 30 H 0.96996 * 120.00013 * 240.52357 * 4 3 2 31 31 H 1.00897 * 111.00415 * 176.04896 * 9 7 5 32 32 H 1.00906 * 110.99907 * 299.99956 * 9 7 5 33 33 H 1.08998 * 109.47195 * 305.00064 * 10 7 5 34 34 H 1.09001 * 109.47253 * 64.99893 * 10 7 5 35 35 H 1.08998 * 109.47073 * 300.00196 * 11 10 7 36 36 H 1.09001 * 109.46464 * 59.99858 * 11 10 7 37 37 H 1.08998 * 109.47464 * 300.00085 * 12 11 10 38 38 H 1.08995 * 109.46923 * 60.00276 * 12 11 10 39 39 H 0.96999 * 120.00040 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.67896 * 290.15485 * 21 3 2 41 41 H 1.08999 * 109.68420 * 50.70461 * 21 3 2 42 42 H 1.08998 * 109.25111 * 290.77833 * 22 21 3 43 43 H 1.09001 * 109.25294 * 171.35402 * 22 21 3 44 44 H 1.08002 * 119.72528 * 359.37093 * 24 23 22 45 45 H 1.08008 * 120.10775 * 179.73327 * 25 24 23 46 46 H 1.08004 * 120.11226 * 180.42747 * 26 25 24 47 47 H 1.07994 * 119.73081 * 179.68152 * 27 26 25 48 48 H 1.08994 * 109.26053 * 102.35404 * 29 28 23 49 49 H 1.08997 * 109.25730 * 221.79635 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.1016 -0.4581 1.3008 5 6 2.7883 -1.6919 1.7435 6 8 2.0981 -2.4226 1.0648 7 6 3.2965 -2.1640 3.0813 8 1 4.3250 -1.8300 3.2178 9 7 3.2472 -3.6312 3.1338 10 6 2.4201 -1.5841 4.1933 11 6 3.0081 -1.9604 5.5548 12 6 2.1320 -1.3800 6.6667 13 6 2.7116 -1.7501 8.0077 14 1 3.6147 -2.3399 8.0615 15 6 2.0890 -1.3357 9.1660 16 7 0.9890 -0.6179 9.1006 17 14 2.8078 -1.7939 10.8282 18 1 4.0391 -2.6000 10.6298 19 1 3.1406 -0.5580 11.5812 20 1 1.8148 -2.5885 11.5948 21 6 3.1236 1.4175 -0.2784 22 6 4.6315 1.4380 -0.0369 23 6 5.3036 0.3174 -0.7863 24 6 6.6763 0.4018 -0.9818 25 6 7.3511 -0.5957 -1.6542 26 6 6.6584 -1.6947 -2.1275 27 6 5.2949 -1.7789 -1.9371 28 6 4.6121 -0.7715 -1.2672 29 6 3.1229 -0.9243 -1.1010 30 1 3.6539 0.1261 1.8435 31 1 3.6426 -3.9757 3.9958 32 1 2.3034 -3.9660 3.0098 33 1 2.3855 -0.4987 4.1000 34 1 1.4113 -1.9883 4.1090 35 1 3.0427 -3.0459 5.6482 36 1 4.0169 -1.5562 5.6390 37 1 2.0979 -0.2946 6.5732 38 1 1.1232 -1.7839 6.5826 39 1 0.5507 -0.3267 9.9154 40 1 2.9141 1.6876 -1.3135 41 1 2.6349 2.1244 0.3920 42 1 4.8262 1.3247 1.0296 43 1 5.0370 2.3912 -0.3763 44 1 7.2188 1.2578 -0.6084 45 1 8.4178 -0.5208 -1.8061 46 1 7.1825 -2.4822 -2.6487 47 1 4.7537 -2.6351 -2.3116 48 1 2.6289 -0.6750 -2.0401 49 1 2.8946 -1.9572 -0.8385 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580050857.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:28 Heat of formation + Delta-G solvation = -25.699689 kcal Electronic energy + Delta-G solvation = -29484.014957 eV Core-core repulsion = 25601.821285 eV Total energy + Delta-G solvation = -3882.193672 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.08957 -40.34810 -38.56995 -37.31636 -36.77963 -35.27872 -34.17114 -33.40146 -32.97913 -31.09234 -29.89510 -29.33558 -26.99498 -25.42716 -24.37437 -23.90782 -22.99867 -21.97601 -21.41808 -20.64846 -19.19775 -18.65739 -18.46135 -17.25698 -17.03139 -16.53989 -16.31315 -16.09861 -15.98059 -15.78084 -15.61216 -15.24207 -14.99566 -14.83040 -14.69450 -14.41098 -14.27143 -14.00492 -13.98157 -13.76827 -13.63478 -13.58211 -13.37091 -13.16309 -12.93437 -12.91307 -12.58327 -12.40884 -12.37280 -12.28585 -12.20532 -11.64487 -11.51370 -11.47001 -11.41397 -11.22973 -10.74322 -10.57475 -10.44919 -9.68027 -9.54782 -9.36540 -8.20993 -6.32305 0.54710 0.58140 1.26839 1.39795 1.40692 1.50934 1.53624 1.58609 2.23082 2.40482 2.64532 2.94220 3.12822 3.45069 3.58123 3.65631 3.72779 3.93521 3.98648 4.06111 4.07516 4.11269 4.26015 4.39099 4.39838 4.44024 4.54124 4.57559 4.66818 4.75456 4.79470 4.89633 4.97900 5.00226 5.04956 5.14754 5.17313 5.23160 5.23560 5.27698 5.34436 5.52010 5.69376 5.72374 5.74592 5.80643 5.84794 6.03261 6.22770 6.23037 6.33892 6.43568 6.47895 6.86389 7.12362 7.37858 8.90943 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013718 B = 0.002453 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.629127 B =11411.896205 C =12022.860788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.222 3.778 3 C 0.284 3.716 4 N -0.704 5.704 5 C 0.526 3.474 6 O -0.555 6.555 7 C 0.087 3.913 8 H 0.129 0.871 9 N -0.830 5.830 10 C -0.136 4.136 11 C -0.093 4.093 12 C 0.023 3.977 13 C -0.539 4.539 14 H 0.065 0.935 15 C -0.004 4.004 16 N -0.937 5.937 17 Si 0.964 3.036 18 H -0.258 1.258 19 H -0.278 1.278 20 H -0.283 1.283 21 C -0.114 4.114 22 C -0.077 4.077 23 C -0.080 4.080 24 C -0.120 4.120 25 C -0.128 4.128 26 C -0.131 4.131 27 C -0.133 4.133 28 C -0.076 4.076 29 C -0.085 4.085 30 H 0.424 0.576 31 H 0.357 0.643 32 H 0.343 0.657 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.054 0.946 36 H 0.069 0.931 37 H -0.007 1.007 38 H -0.020 1.020 39 H 0.262 0.738 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.116 0.884 44 H 0.146 0.854 45 H 0.138 0.862 46 H 0.131 0.869 47 H 0.115 0.885 48 H 0.099 0.901 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.878 5.433 -24.711 29.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.098 4.098 3 C 0.193 3.807 4 N -0.361 5.361 5 C 0.313 3.687 6 O -0.432 6.432 7 C -0.028 4.028 8 H 0.146 0.854 9 N -0.362 5.362 10 C -0.176 4.176 11 C -0.131 4.131 12 C -0.014 4.014 13 C -0.577 4.577 14 H 0.083 0.917 15 C -0.201 4.201 16 N -0.577 5.577 17 Si 0.789 3.211 18 H -0.181 1.181 19 H -0.204 1.204 20 H -0.209 1.209 21 C -0.152 4.152 22 C -0.114 4.114 23 C -0.080 4.080 24 C -0.138 4.138 25 C -0.146 4.146 26 C -0.149 4.149 27 C -0.151 4.151 28 C -0.076 4.076 29 C -0.124 4.124 30 H 0.265 0.735 31 H 0.173 0.827 32 H 0.156 0.844 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.011 0.989 38 H -0.002 1.002 39 H 0.071 0.929 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.114 0.886 43 H 0.134 0.866 44 H 0.163 0.837 45 H 0.156 0.844 46 H 0.149 0.851 47 H 0.133 0.867 48 H 0.117 0.883 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.041 4.996 -25.724 29.729 hybrid contribution -0.615 -0.195 2.087 2.184 sum 13.426 4.800 -23.637 27.605 Atomic orbital electron populations 1.81182 1.14583 1.10053 1.08153 1.29866 0.95597 0.91616 0.92708 1.17736 0.78388 0.99155 0.85375 1.45973 1.54284 1.16077 1.19735 1.20907 0.78802 0.81205 0.87752 1.90655 1.38557 1.55536 1.58427 1.21381 1.01560 0.90312 0.89553 0.85362 1.58711 1.27707 1.06301 1.43475 1.22255 0.98472 1.01866 0.95037 1.21420 0.99364 1.00079 0.92196 1.19011 0.94069 0.94742 0.93619 1.21760 1.10517 1.33102 0.92289 0.91676 1.26014 0.95286 0.95043 1.03772 1.70115 1.20015 1.38293 1.29295 0.85411 0.78718 0.78160 0.78850 1.18132 1.20368 1.20877 1.21976 0.97163 0.90262 1.05820 1.20561 0.92038 0.97830 1.00972 1.19738 0.94091 0.95381 0.98818 1.21430 0.93542 0.99887 0.98925 1.21379 1.00868 0.94131 0.98244 1.21273 0.94024 0.99016 1.00564 1.21248 0.95250 0.98669 0.99968 1.19297 0.93681 0.95127 0.99478 1.20792 0.93293 1.00799 0.97528 0.73496 0.82717 0.84396 0.90835 0.94156 0.92711 0.91221 0.98887 1.00194 0.92904 0.87400 0.88018 0.88628 0.86615 0.83670 0.84384 0.85104 0.86659 0.88325 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.93 18.54 20.01 0.37 -14.55 16 2 C 0.22 5.65 12.81 89.44 1.15 6.80 16 3 C 0.28 4.85 0.61 1.82 0.00 4.85 16 4 N -0.70 -12.53 4.52 -431.11 -1.95 -14.48 16 5 C 0.53 13.40 6.47 87.66 0.57 13.96 16 6 O -0.56 -18.16 13.46 -3.03 -0.04 -18.20 16 7 C 0.09 2.13 3.21 44.17 0.14 2.27 16 8 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 9 N -0.83 -21.58 8.94 -171.81 -1.54 -23.12 16 10 C -0.14 -4.15 4.84 30.60 0.15 -4.00 16 11 C -0.09 -3.38 4.92 30.60 0.15 -3.23 16 12 C 0.02 1.15 4.97 29.85 0.15 1.30 16 13 C -0.54 -29.72 9.11 25.60 0.23 -29.48 16 14 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 15 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 16 N -0.94 -56.96 13.29 21.45 0.28 -56.68 16 17 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 18 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 C -0.11 -0.98 4.98 30.61 0.15 -0.83 16 22 C -0.08 -0.46 5.24 29.74 0.16 -0.31 16 23 C -0.08 -0.92 5.66 -19.86 -0.11 -1.03 16 24 C -0.12 -1.25 9.61 22.36 0.21 -1.04 16 25 C -0.13 -1.52 10.05 22.20 0.22 -1.30 16 26 C -0.13 -1.86 10.05 22.20 0.22 -1.64 16 27 C -0.13 -2.24 9.61 22.36 0.21 -2.03 16 28 C -0.08 -1.19 5.60 -19.86 -0.11 -1.30 16 29 C -0.09 -1.53 4.32 29.74 0.13 -1.40 16 30 H 0.42 4.97 6.80 -92.71 -0.63 4.34 16 31 H 0.36 8.58 7.55 -89.70 -0.68 7.90 16 32 H 0.34 9.80 8.58 -89.69 -0.77 9.04 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.05 1.92 6.87 -2.39 -0.02 1.91 16 36 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 37 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 38 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 39 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 40 H 0.11 0.71 8.10 -2.39 -0.02 0.69 16 41 H 0.10 0.69 8.12 -2.39 -0.02 0.67 16 42 H 0.10 0.38 6.63 -2.39 -0.02 0.36 16 43 H 0.12 0.20 8.13 -2.39 -0.02 0.18 16 44 H 0.15 0.79 8.05 -2.91 -0.02 0.77 16 45 H 0.14 1.07 8.06 -2.91 -0.02 1.04 16 46 H 0.13 1.46 8.06 -2.91 -0.02 1.43 16 47 H 0.12 1.93 8.05 -2.91 -0.02 1.90 16 48 H 0.10 1.54 8.10 -2.39 -0.02 1.52 16 49 H 0.08 1.97 5.95 -2.39 -0.01 1.95 16 Total: -1.00 -77.52 399.06 2.16 -75.35 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: -1.08 Total: 24.28 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: 4.09 Total: -18.15 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -2.83 Total: -108.83 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.04 Total: -18.20 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -77.52 2.16 -75.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050857.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.654 kcal (2) G-P(sol) polarization free energy of solvation -77.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds