Wall clock time and date at job start Sat Apr 11 2020 06:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.70999 * 270.93585 * 3 2 1 5 5 C 1.34777 * 120.00404 * 300.54295 * 4 3 2 6 6 O 1.21286 * 119.99659 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00334 * 179.97438 * 5 4 3 8 8 H 1.09004 * 109.47222 * 320.00024 * 7 5 4 9 9 N 1.46903 * 109.47370 * 199.99615 * 7 5 4 10 10 C 1.53004 * 109.47003 * 79.99691 * 7 5 4 11 11 C 1.52999 * 109.46822 * 184.99816 * 10 7 5 12 12 C 1.53004 * 109.46822 * 180.02562 * 11 10 7 13 13 C 1.50701 * 109.46949 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00040 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00106 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99583 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00082 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46985 * 89.99901 * 17 15 13 19 19 H 1.48493 * 109.47068 * 209.99813 * 17 15 13 20 20 H 1.48493 * 109.47335 * 330.00024 * 17 15 13 21 21 C 1.53320 * 109.68218 * 31.47644 * 3 2 1 22 22 C 1.52734 * 108.43343 * 49.88297 * 21 3 2 23 23 C 1.50627 * 110.60013 * 51.02488 * 22 21 3 24 24 C 1.38914 * 117.75463 * 162.33728 * 23 22 21 25 25 C 1.37931 * 120.54161 * 179.70160 * 24 23 22 26 26 C 1.38258 * 119.77835 * 359.97438 * 25 24 23 27 27 C 1.37938 * 119.77075 * 0.12286 * 26 25 24 28 28 C 1.37659 * 122.56500 * 342.26698 * 23 22 21 29 29 C 1.50638 * 122.56675 * 0.75466 * 28 23 22 30 30 H 0.97000 * 120.00017 * 120.53997 * 4 3 2 31 31 H 1.00896 * 111.00051 * 300.00366 * 9 7 5 32 32 H 1.00899 * 110.99629 * 63.95569 * 9 7 5 33 33 H 1.09000 * 109.47338 * 304.99998 * 10 7 5 34 34 H 1.08998 * 109.46789 * 65.00208 * 10 7 5 35 35 H 1.08993 * 109.47663 * 299.99974 * 11 10 7 36 36 H 1.08998 * 109.47118 * 60.00594 * 11 10 7 37 37 H 1.09000 * 109.47338 * 300.00182 * 12 11 10 38 38 H 1.08997 * 109.47300 * 60.00322 * 12 11 10 39 39 H 0.96994 * 119.99441 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.67996 * 290.13387 * 21 3 2 41 41 H 1.08995 * 109.67675 * 169.62830 * 21 3 2 42 42 H 1.08997 * 109.24686 * 171.31529 * 22 21 3 43 43 H 1.08998 * 109.24509 * 290.77103 * 22 21 3 44 44 H 1.07995 * 119.72965 * 359.71149 * 24 23 22 45 45 H 1.08005 * 120.11158 * 180.02562 * 25 24 23 46 46 H 1.08007 * 120.11547 * 180.09777 * 26 25 24 47 47 H 1.07992 * 119.72981 * 180.02562 * 27 26 25 48 48 H 1.08992 * 109.25960 * 102.43003 * 29 28 23 49 49 H 1.09005 * 109.25338 * 221.90214 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.1021 -0.0216 1.3790 5 6 2.7706 0.9697 2.2298 6 8 2.0636 1.8805 1.8536 7 6 3.2784 0.9464 3.6484 8 1 3.2420 -0.0738 4.0307 9 7 2.4365 1.8129 4.4842 10 6 4.7220 1.4523 3.6817 11 6 5.2789 1.3120 5.0998 12 6 6.7223 1.8184 5.1333 13 6 7.2711 1.6797 6.5299 14 1 6.6524 1.2707 7.3151 15 6 8.5630 2.0748 6.8055 16 7 9.3165 2.5723 5.8492 17 14 9.2430 1.9034 8.5368 18 1 9.8822 0.5716 8.6880 19 1 10.2507 2.9666 8.7803 20 1 8.1367 2.0358 9.5185 21 6 3.1250 -1.2303 -0.7538 22 6 2.4086 -1.3081 -2.1004 23 6 2.4952 0.0104 -2.8237 24 6 2.2373 0.0176 -4.1887 25 6 2.2944 1.1940 -4.9066 26 6 2.6103 2.3763 -4.2633 27 6 2.8686 2.3710 -2.9083 28 6 2.8148 1.1867 -2.1842 29 6 3.1210 1.2513 -0.7106 30 1 3.6679 -0.7499 1.6797 31 1 2.4535 2.7647 4.1500 32 1 1.4914 1.4627 4.5306 33 1 5.3290 0.8645 2.9932 34 1 4.7466 2.5005 3.3838 35 1 4.6720 1.8997 5.7884 36 1 5.2543 0.2638 5.3978 37 1 7.3296 1.2310 4.4446 38 1 6.7465 2.8667 4.8355 39 1 10.2255 2.8499 6.0430 40 1 2.9164 -2.1298 -0.1746 41 1 4.1991 -1.1381 -0.9143 42 1 2.8725 -2.0835 -2.7100 43 1 1.3607 -1.5591 -1.9360 44 1 1.9900 -0.9054 -4.6919 45 1 2.0923 1.1916 -5.9675 46 1 2.6550 3.3009 -4.8198 47 1 3.1148 3.2950 -2.4064 48 1 4.1992 1.3270 -0.5705 49 1 2.6402 2.1306 -0.2818 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580050859.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:38 Heat of formation + Delta-G solvation = -6.188901 kcal Electronic energy + Delta-G solvation = -29039.884549 eV Core-core repulsion = 25158.536928 eV Total energy + Delta-G solvation = -3881.347621 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.28745 -39.82366 -37.77507 -35.78574 -35.63518 -34.06680 -33.37906 -32.74672 -31.38261 -30.32114 -29.15948 -27.86037 -25.44629 -24.32325 -23.79356 -22.57119 -22.44520 -21.04733 -20.15760 -20.04540 -18.02577 -17.48413 -16.72226 -16.45910 -16.35725 -15.86367 -15.43225 -15.19247 -14.87602 -14.63954 -14.49910 -14.48962 -14.37022 -14.00852 -13.54283 -13.44011 -13.24280 -13.06754 -12.76581 -12.72141 -12.68598 -12.42293 -12.04952 -11.96626 -11.79153 -11.71092 -11.53945 -11.30886 -11.16535 -11.00478 -10.76655 -10.63068 -10.44534 -10.25992 -9.71158 -9.62159 -9.25144 -9.06793 -9.06391 -8.89653 -8.64043 -8.30986 -5.96911 -3.98349 1.02851 1.06187 2.18385 2.34018 2.52451 3.09124 3.33848 3.40329 3.42138 3.44346 3.51688 3.99748 4.16387 4.33007 4.48408 4.49193 4.54566 4.57790 4.71321 4.76964 4.83688 4.90850 5.08826 5.10296 5.15187 5.31260 5.32602 5.34638 5.39152 5.40135 5.48660 5.55568 5.70386 5.80662 5.87306 5.95061 6.06425 6.16373 6.21421 6.28952 6.39504 6.68913 6.78534 6.95724 6.99135 7.18007 7.22199 7.32169 7.44864 7.73014 7.87959 7.89805 8.04622 8.47966 9.09312 9.65538 11.14497 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016322 B = 0.002160 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.094550 B =12961.360614 C =13702.443693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.212 3.788 3 C 0.280 3.720 4 N -0.721 5.721 5 C 0.484 3.516 6 O -0.534 6.534 7 C 0.080 3.920 8 H 0.103 0.897 9 N -0.810 5.810 10 C -0.103 4.103 11 C -0.100 4.100 12 C 0.020 3.980 13 C -0.516 4.516 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.119 4.119 22 C -0.081 4.081 23 C -0.082 4.082 24 C -0.117 4.117 25 C -0.121 4.121 26 C -0.119 4.119 27 C -0.113 4.113 28 C -0.073 4.073 29 C -0.088 4.088 30 H 0.414 0.586 31 H 0.351 0.649 32 H 0.338 0.662 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.012 0.988 38 H 0.014 0.986 39 H 0.259 0.741 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.124 0.876 48 H 0.103 0.897 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.113 -8.269 -21.432 26.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.109 4.109 3 C 0.189 3.811 4 N -0.376 5.376 5 C 0.270 3.730 6 O -0.410 6.410 7 C -0.036 4.036 8 H 0.121 0.879 9 N -0.338 5.338 10 C -0.142 4.142 11 C -0.138 4.138 12 C -0.017 4.017 13 C -0.555 4.555 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.158 4.158 22 C -0.119 4.119 23 C -0.082 4.082 24 C -0.135 4.135 25 C -0.139 4.139 26 C -0.137 4.137 27 C -0.131 4.131 28 C -0.073 4.073 29 C -0.127 4.127 30 H 0.251 0.749 31 H 0.165 0.835 32 H 0.151 0.849 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.031 0.969 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.142 0.858 48 H 0.121 0.879 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.673 -7.702 -21.074 26.809 hybrid contribution 0.558 -0.154 0.050 0.581 sum -14.115 -7.856 -21.024 26.513 Atomic orbital electron populations 1.81135 1.12684 1.08194 1.06986 1.29000 0.94852 0.93256 0.93756 1.17479 0.81109 0.98519 0.83974 1.46316 1.53651 1.27892 1.09771 1.22854 0.79403 0.80957 0.89778 1.90696 1.37281 1.34853 1.78126 1.21814 0.96553 1.00047 0.85177 0.87931 1.59039 1.15132 1.06511 1.53158 1.21671 0.90052 1.01255 1.01181 1.21543 0.99029 1.00537 0.92709 1.19118 0.89595 0.96238 0.96791 1.21279 0.97643 1.41094 0.95456 0.92678 1.25031 0.97220 0.95411 0.96924 1.69965 1.08546 1.43074 1.32125 0.86621 0.78808 0.77648 0.85089 1.20750 1.21317 1.19870 1.21898 1.02297 0.95736 0.95850 1.20486 1.01407 0.95066 0.94918 1.19543 1.00394 0.94257 0.94023 1.21105 1.00588 0.98429 0.93425 1.21080 1.00219 0.92767 0.99875 1.21097 0.99752 0.98270 0.94614 1.21170 0.99924 0.97598 0.94381 1.19463 1.00095 0.93008 0.94754 1.20929 1.03106 0.97908 0.90761 0.74890 0.83459 0.84943 0.91659 0.91799 0.91842 0.93623 0.96926 0.96783 0.93110 0.89286 0.88147 0.89067 0.90482 0.86074 0.86039 0.85917 0.85779 0.87928 0.87901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.12 18.54 42.16 0.78 -5.33 16 2 C 0.21 2.58 10.64 -20.76 -0.22 2.36 16 3 C 0.28 2.47 0.78 -134.59 -0.10 2.37 16 4 N -0.72 -6.16 5.10 -50.21 -0.26 -6.42 16 5 C 0.48 5.67 6.49 -10.99 -0.07 5.60 16 6 O -0.53 -7.89 13.63 5.55 0.08 -7.82 16 7 C 0.08 0.97 3.15 -68.86 -0.22 0.75 16 8 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 9 N -0.81 -10.42 8.44 -5.65 -0.05 -10.47 16 10 C -0.10 -1.52 4.84 -26.73 -0.13 -1.65 16 11 C -0.10 -1.92 5.04 -26.73 -0.13 -2.06 16 12 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 13 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 14 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 17 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 C -0.12 -0.67 5.03 -26.70 -0.13 -0.80 16 22 C -0.08 -0.52 5.17 -28.06 -0.15 -0.66 16 23 C -0.08 -0.70 5.52 -104.62 -0.58 -1.27 16 24 C -0.12 -0.92 9.61 -39.44 -0.38 -1.30 16 25 C -0.12 -0.94 10.05 -39.69 -0.40 -1.34 16 26 C -0.12 -0.99 10.05 -39.68 -0.40 -1.39 16 27 C -0.11 -1.05 9.61 -39.44 -0.38 -1.43 16 28 C -0.07 -0.69 5.43 -104.61 -0.57 -1.26 16 29 C -0.09 -0.84 4.20 -28.06 -0.12 -0.96 16 30 H 0.41 2.34 8.48 -40.82 -0.35 1.99 16 31 H 0.35 4.70 8.58 -39.29 -0.34 4.36 16 32 H 0.34 3.92 9.06 -39.29 -0.36 3.56 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.28 7.75 -51.93 -0.40 0.88 16 36 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.42 8.10 -51.93 -0.42 0.00 16 42 H 0.09 0.39 8.12 -51.93 -0.42 -0.03 16 43 H 0.08 0.57 7.31 -51.93 -0.38 0.19 16 44 H 0.12 0.70 8.05 -52.49 -0.42 0.28 16 45 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 46 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 47 H 0.12 1.04 8.05 -52.49 -0.42 0.62 16 48 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.10 1.23 6.48 -51.93 -0.34 0.90 16 LS Contribution 402.30 15.07 6.06 6.06 Total: -1.00 -34.74 402.30 -9.81 -44.55 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.62 Total: 4.87 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -4.53 Total: -15.98 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 1.21 Total: -48.21 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.08 Total: -7.82 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.74 -9.81 -44.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050859.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.364 kcal (2) G-P(sol) polarization free energy of solvation -34.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds